2017-08-28 12:33:15 [D] model:380 Loading spike clusters. 2017-08-28 12:33:15 [D] model:395 Loading templates. 2017-08-28 12:33:15 [D] model:416 Loading the whitening matrix. 2017-08-28 12:33:15 [D] model:420 Loading the inverse of the whitening matrix. 2017-08-28 12:33:15 [D] model:101 Loading traces at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Peter_MS12_170714_122034_concat.dat`. 2017-08-28 12:33:15 [D] context:46 Create cache directory `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy`. 2017-08-28 12:33:15 [D] context:67 Initialize joblib cache dir at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy`. 2017-08-28 12:33:15 [D] context:148 The file `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\new_cluster_id.pkl` doesn't exist. 2017-08-28 12:33:15 [D] context:148 The file `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\spikes_per_cluster.pkl` doesn't exist. 2017-08-28 12:33:15 [D] clustering:253 Recompute spikes_per_cluster manually: this is long. 2017-08-28 12:33:15 [D] context:134 Save data to `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\spikes_per_cluster.pkl`. 2017-08-28 12:33:15 [D] config:46 Load config file `C:\Users\peter\.phy\phy_config.py`. 2017-08-28 12:33:15 [D] __init__:40 Attached plugin ControllerSettings. 2017-08-28 12:33:15 [W] __init__:43 An error occurred when attaching plugin SpatialMap: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 12:33:16 [W] __init__:43 An error occurred when attaching plugin PhasePrecession: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 12:33:16 [W] __init__:43 An error occurred when attaching plugin PhasePrecession2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 12:33:16 [W] __init__:43 An error occurred when attaching plugin PosTrials: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 12:33:16 [W] __init__:43 An error occurred when attaching plugin PosTrials2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 12:33:16 [D] gui:432 Load the GUI state from `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 12:33:21 [D] gui:173 Load the geometry state. 2017-08-28 12:33:23 [D] supervisor:342 Select cluster(s): 1. 2017-08-28 12:36:14 [D] supervisor:342 Select cluster(s): 32. 2017-08-28 12:36:19 [D] supervisor:342 Select cluster(s): 41. 2017-08-28 12:36:23 [D] supervisor:342 Select cluster(s): 43. 2017-08-28 12:36:27 [D] supervisor:342 Select cluster(s): 52. 2017-08-28 12:36:31 [D] supervisor:342 Select cluster(s): 59. 2017-08-28 12:36:33 [D] supervisor:342 Select cluster(s): 60. 2017-08-28 15:04:30 [D] gui:179 Save the geometry state. 2017-08-28 15:04:30 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:04:30 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:04:30 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:04:30 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:04:30 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:04:30 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:04:30 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:04:30 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:04:30 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 15:04:30 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 15:04:30 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 15:04:30 [D] context:102 Save memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 15:04:30 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 15:04:54 [D] model:380 Loading spike clusters. 2017-08-28 15:04:54 [D] model:395 Loading templates. 2017-08-28 15:04:54 [D] model:416 Loading the whitening matrix. 2017-08-28 15:04:54 [D] model:420 Loading the inverse of the whitening matrix. 2017-08-28 15:04:54 [D] model:101 Loading traces at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Peter_MS12_170714_122034_concat.dat`. 2017-08-28 15:04:54 [D] context:67 Initialize joblib cache dir at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy`. 2017-08-28 15:04:54 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 15:04:54 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 15:04:54 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 15:04:54 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 15:04:54 [D] context:91 Load memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 15:04:54 [D] context:148 The file `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\new_cluster_id.pkl` doesn't exist. 2017-08-28 15:04:54 [D] context:134 Save data to `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\spikes_per_cluster.pkl`. 2017-08-28 15:04:55 [D] config:46 Load config file `C:\Users\peter\.phy\phy_config.py`. 2017-08-28 15:04:55 [D] __init__:40 Attached plugin ControllerSettings. 2017-08-28 15:04:55 [W] __init__:43 An error occurred when attaching plugin SpatialMap: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:04:55 [W] __init__:43 An error occurred when attaching plugin PhasePrecession: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:04:55 [W] __init__:43 An error occurred when attaching plugin PhasePrecession2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:04:55 [W] __init__:43 An error occurred when attaching plugin PosTrials: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:04:55 [W] __init__:43 An error occurred when attaching plugin PosTrials2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:04:55 [D] gui:432 Load the GUI state from `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:04:58 [D] gui:173 Load the geometry state. 2017-08-28 15:05:00 [D] supervisor:342 Select cluster(s): 4. 2017-08-28 15:06:08 [D] supervisor:342 Select cluster(s): 1. 2017-08-28 15:06:53 [D] supervisor:342 Select cluster(s): 4. 2017-08-28 15:06:54 [D] supervisor:342 Select cluster(s): 1. 2017-08-28 15:21:32 [D] gui:179 Save the geometry state. 2017-08-28 15:21:32 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:21:32 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:21:32 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:21:32 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:21:32 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:21:32 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:21:32 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:21:32 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:21:32 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 15:21:32 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 15:21:32 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 15:21:32 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 15:21:32 [D] context:102 Save memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 15:21:35 [D] model:380 Loading spike clusters. 2017-08-28 15:21:35 [D] model:395 Loading templates. 2017-08-28 15:21:35 [D] model:416 Loading the whitening matrix. 2017-08-28 15:21:35 [D] model:420 Loading the inverse of the whitening matrix. 2017-08-28 15:21:35 [D] model:101 Loading traces at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Peter_MS12_170714_122034_concat.dat`. 2017-08-28 15:21:35 [D] context:67 Initialize joblib cache dir at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy`. 2017-08-28 15:21:35 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 15:21:35 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 15:21:35 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 15:21:35 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 15:21:35 [D] context:91 Load memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 15:21:35 [D] context:148 The file `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\new_cluster_id.pkl` doesn't exist. 2017-08-28 15:21:35 [D] context:134 Save data to `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\spikes_per_cluster.pkl`. 2017-08-28 15:21:35 [D] config:46 Load config file `C:\Users\peter\.phy\phy_config.py`. 2017-08-28 15:21:35 [D] __init__:40 Attached plugin ControllerSettings. 2017-08-28 15:21:35 [W] __init__:43 An error occurred when attaching plugin SpatialMap: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:21:35 [W] __init__:43 An error occurred when attaching plugin PhasePrecession: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:21:35 [W] __init__:43 An error occurred when attaching plugin PhasePrecession2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:21:35 [W] __init__:43 An error occurred when attaching plugin PosTrials: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:21:35 [W] __init__:43 An error occurred when attaching plugin PosTrials2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:21:35 [D] gui:432 Load the GUI state from `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:21:38 [D] gui:173 Load the geometry state. 2017-08-28 15:21:50 [D] supervisor:342 Select cluster(s): 4. 2017-08-28 15:21:58 [E] cli:36 An error has occurred (TypeError): MahalanobisDist() missing 1 required positional argument: 'y' 2017-08-28 15:21:58 [D] cli:39 Traceback (most recent call last): File "C:\Users\peter\Anaconda3\envs\phy\lib\site-packages\phy\gui\actions.py", line 98, in wrapped return f(*args) TypeError: MahalanobisDist() missing 1 required positional argument: 'y' 2017-08-28 15:23:03 [D] gui:179 Save the geometry state. 2017-08-28 15:23:03 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:23:03 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:23:03 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:23:03 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:23:03 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:23:03 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:23:03 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:23:03 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:23:03 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 15:23:03 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 15:23:03 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 15:23:03 [D] context:102 Save memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 15:23:03 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 15:23:06 [D] model:380 Loading spike clusters. 2017-08-28 15:23:06 [D] model:395 Loading templates. 2017-08-28 15:23:06 [D] model:416 Loading the whitening matrix. 2017-08-28 15:23:06 [D] model:420 Loading the inverse of the whitening matrix. 2017-08-28 15:23:06 [D] model:101 Loading traces at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Peter_MS12_170714_122034_concat.dat`. 2017-08-28 15:23:06 [D] context:67 Initialize joblib cache dir at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy`. 2017-08-28 15:23:06 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 15:23:06 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 15:23:06 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 15:23:06 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 15:23:06 [D] context:91 Load memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 15:23:06 [D] context:148 The file `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\new_cluster_id.pkl` doesn't exist. 2017-08-28 15:23:06 [D] context:134 Save data to `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\spikes_per_cluster.pkl`. 2017-08-28 15:23:06 [D] config:46 Load config file `C:\Users\peter\.phy\phy_config.py`. 2017-08-28 15:23:06 [D] __init__:40 Attached plugin ControllerSettings. 2017-08-28 15:23:06 [W] __init__:43 An error occurred when attaching plugin SpatialMap: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:23:06 [W] __init__:43 An error occurred when attaching plugin PhasePrecession: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:23:06 [W] __init__:43 An error occurred when attaching plugin PhasePrecession2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:23:06 [W] __init__:43 An error occurred when attaching plugin PosTrials: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:23:06 [W] __init__:43 An error occurred when attaching plugin PosTrials2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:23:06 [D] gui:432 Load the GUI state from `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:23:10 [D] gui:173 Load the geometry state. 2017-08-28 15:23:12 [D] supervisor:342 Select cluster(s): 4. 2017-08-28 15:23:14 [W] ControllerSettings:174 Running MahalanobisDist... 2017-08-28 15:23:14 [W] ControllerSettings:186 1 2017-08-28 15:23:14 [W] ControllerSettings:195 Calculating the Mahalanobis distance 2017-08-28 15:23:14 [E] cli:36 An error has occurred (ValueError): shapes (2,196) and (72,72) not aligned: 196 (dim 1) != 72 (dim 0) 2017-08-28 15:23:14 [D] cli:39 Traceback (most recent call last): File "C:\Users\peter\Anaconda3\envs\phy\lib\site-packages\phy\gui\actions.py", line 85, in wrapped return f() File "C:\Users\peter\Dropbox\PhyPlugins\plugins\ControllerSettings.py", line 196, in MahalanobisDist MD = MahalanobisDistCalc(x,x) File "C:\Users\peter\Dropbox\PhyPlugins\plugins\ControllerSettings.py", line 184, in MahalanobisDistCalc md.append(np.sqrt(np.dot(np.dot(np.transpose(diff_xy[i]),inv_covariance_xy),diff_xy[i]))) ValueError: shapes (2,196) and (72,72) not aligned: 196 (dim 1) != 72 (dim 0) 2017-08-28 15:27:38 [D] gui:179 Save the geometry state. 2017-08-28 15:27:38 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:27:38 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:27:38 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:27:38 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:27:38 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:27:38 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:27:38 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:27:38 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:27:38 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 15:27:38 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 15:27:38 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 15:27:38 [D] context:102 Save memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 15:27:38 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 15:27:42 [D] model:380 Loading spike clusters. 2017-08-28 15:27:42 [D] model:395 Loading templates. 2017-08-28 15:27:42 [D] model:416 Loading the whitening matrix. 2017-08-28 15:27:42 [D] model:420 Loading the inverse of the whitening matrix. 2017-08-28 15:27:42 [D] model:101 Loading traces at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Peter_MS12_170714_122034_concat.dat`. 2017-08-28 15:27:42 [D] context:67 Initialize joblib cache dir at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy`. 2017-08-28 15:27:42 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 15:27:42 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 15:27:42 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 15:27:42 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 15:27:42 [D] context:91 Load memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 15:27:42 [D] context:148 The file `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\new_cluster_id.pkl` doesn't exist. 2017-08-28 15:27:43 [D] context:134 Save data to `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\spikes_per_cluster.pkl`. 2017-08-28 15:27:43 [D] config:46 Load config file `C:\Users\peter\.phy\phy_config.py`. 2017-08-28 15:27:43 [D] __init__:40 Attached plugin ControllerSettings. 2017-08-28 15:27:43 [W] __init__:43 An error occurred when attaching plugin SpatialMap: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:27:43 [W] __init__:43 An error occurred when attaching plugin PhasePrecession: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:27:43 [W] __init__:43 An error occurred when attaching plugin PhasePrecession2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:27:43 [W] __init__:43 An error occurred when attaching plugin PosTrials: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:27:43 [W] __init__:43 An error occurred when attaching plugin PosTrials2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:27:43 [D] gui:432 Load the GUI state from `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:27:46 [D] gui:173 Load the geometry state. 2017-08-28 15:27:49 [D] supervisor:342 Select cluster(s): 2. 2017-08-28 15:27:53 [W] ControllerSettings:174 Running MahalanobisDist... 2017-08-28 15:27:53 [W] ControllerSettings:186 1 2017-08-28 15:27:53 [W] ControllerSettings:195 Calculating the Mahalanobis distance 2017-08-28 15:27:54 [E] cli:36 An error has occurred (LinAlgError): Singular matrix 2017-08-28 15:27:54 [D] cli:39 Traceback (most recent call last): File "C:\Users\peter\Anaconda3\envs\phy\lib\site-packages\phy\gui\actions.py", line 85, in wrapped return f() File "C:\Users\peter\Dropbox\PhyPlugins\plugins\ControllerSettings.py", line 196, in MahalanobisDist MD = MahalanobisDistCalc(x,x) File "C:\Users\peter\Dropbox\PhyPlugins\plugins\ControllerSettings.py", line 177, in MahalanobisDistCalc inv_covariance_xy = np.linalg.inv(covariance_xy) File "C:\Users\peter\Anaconda3\envs\phy\lib\site-packages\numpy\linalg\linalg.py", line 526, in inv ainv = _umath_linalg.inv(a, signature=signature, extobj=extobj) File "C:\Users\peter\Anaconda3\envs\phy\lib\site-packages\numpy\linalg\linalg.py", line 90, in _raise_linalgerror_singular raise LinAlgError("Singular matrix") numpy.linalg.linalg.LinAlgError: Singular matrix 2017-08-28 15:28:48 [D] gui:179 Save the geometry state. 2017-08-28 15:28:48 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:28:48 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:28:48 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:28:48 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:28:48 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:28:48 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:28:48 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:28:48 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:28:48 [D] context:102 Save memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 15:28:48 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 15:28:48 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 15:28:48 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 15:28:48 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 15:28:51 [D] model:380 Loading spike clusters. 2017-08-28 15:28:51 [D] model:395 Loading templates. 2017-08-28 15:28:51 [D] model:416 Loading the whitening matrix. 2017-08-28 15:28:51 [D] model:420 Loading the inverse of the whitening matrix. 2017-08-28 15:28:51 [D] model:101 Loading traces at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Peter_MS12_170714_122034_concat.dat`. 2017-08-28 15:28:51 [D] context:67 Initialize joblib cache dir at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy`. 2017-08-28 15:28:51 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 15:28:51 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 15:28:51 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 15:28:51 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 15:28:51 [D] context:91 Load memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 15:28:51 [D] context:148 The file `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\new_cluster_id.pkl` doesn't exist. 2017-08-28 15:28:52 [D] context:134 Save data to `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\spikes_per_cluster.pkl`. 2017-08-28 15:28:52 [D] config:46 Load config file `C:\Users\peter\.phy\phy_config.py`. 2017-08-28 15:28:52 [D] __init__:40 Attached plugin ControllerSettings. 2017-08-28 15:28:52 [W] __init__:43 An error occurred when attaching plugin SpatialMap: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:28:52 [W] __init__:43 An error occurred when attaching plugin PhasePrecession: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:28:52 [W] __init__:43 An error occurred when attaching plugin PhasePrecession2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:28:52 [W] __init__:43 An error occurred when attaching plugin PosTrials: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:28:52 [W] __init__:43 An error occurred when attaching plugin PosTrials2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:28:52 [D] gui:432 Load the GUI state from `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:28:55 [D] gui:173 Load the geometry state. 2017-08-28 15:28:57 [D] supervisor:342 Select cluster(s): 1. 2017-08-28 15:28:59 [W] ControllerSettings:174 Running MahalanobisDist... 2017-08-28 15:28:59 [W] ControllerSettings:186 1 2017-08-28 15:28:59 [W] ControllerSettings:195 Calculating the Mahalanobis distance 2017-08-28 15:31:05 [W] _qt:147 b'QObject::killTimers: timers cannot be stopped from another thread' 2017-08-28 15:45:21 [D] model:380 Loading spike clusters. 2017-08-28 15:45:21 [D] model:395 Loading templates. 2017-08-28 15:45:21 [D] model:416 Loading the whitening matrix. 2017-08-28 15:45:21 [D] model:420 Loading the inverse of the whitening matrix. 2017-08-28 15:45:21 [D] model:101 Loading traces at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Peter_MS12_170714_122034_concat.dat`. 2017-08-28 15:45:21 [D] context:67 Initialize joblib cache dir at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy`. 2017-08-28 15:45:21 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 15:45:21 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 15:45:21 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 15:45:21 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 15:45:21 [D] context:91 Load memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 15:45:21 [D] context:148 The file `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\new_cluster_id.pkl` doesn't exist. 2017-08-28 15:45:22 [D] context:134 Save data to `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\spikes_per_cluster.pkl`. 2017-08-28 15:45:22 [D] config:46 Load config file `C:\Users\peter\.phy\phy_config.py`. 2017-08-28 15:45:22 [W] __init__:36 The plugin ControllerSettings couldn't be found. 2017-08-28 15:45:22 [W] __init__:43 An error occurred when attaching plugin SpatialMap: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:45:22 [W] __init__:43 An error occurred when attaching plugin PhasePrecession: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:45:22 [W] __init__:43 An error occurred when attaching plugin PhasePrecession2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:45:22 [W] __init__:43 An error occurred when attaching plugin PosTrials: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:45:22 [W] __init__:43 An error occurred when attaching plugin PosTrials2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:45:22 [D] gui:432 Load the GUI state from `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:45:25 [D] gui:173 Load the geometry state. 2017-08-28 15:45:27 [D] supervisor:342 Select cluster(s): 6. 2017-08-28 15:47:22 [W] _qt:147 b'QObject::killTimers: timers cannot be stopped from another thread' 2017-08-28 15:50:35 [D] model:380 Loading spike clusters. 2017-08-28 15:50:35 [D] model:395 Loading templates. 2017-08-28 15:50:35 [D] model:416 Loading the whitening matrix. 2017-08-28 15:50:35 [D] model:420 Loading the inverse of the whitening matrix. 2017-08-28 15:50:35 [D] model:101 Loading traces at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Peter_MS12_170714_122034_concat.dat`. 2017-08-28 15:50:35 [D] context:67 Initialize joblib cache dir at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy`. 2017-08-28 15:50:35 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 15:50:35 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 15:50:35 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 15:50:35 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 15:50:35 [D] context:91 Load memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 15:50:35 [D] context:148 The file `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\new_cluster_id.pkl` doesn't exist. 2017-08-28 15:50:35 [D] context:134 Save data to `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\spikes_per_cluster.pkl`. 2017-08-28 15:50:35 [D] config:46 Load config file `C:\Users\peter\.phy\phy_config.py`. 2017-08-28 15:50:35 [W] __init__:36 The plugin ControllerSettings couldn't be found. 2017-08-28 15:50:35 [W] __init__:43 An error occurred when attaching plugin SpatialMap: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:50:35 [W] __init__:43 An error occurred when attaching plugin PhasePrecession: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:50:35 [W] __init__:43 An error occurred when attaching plugin PhasePrecession2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:50:35 [W] __init__:43 An error occurred when attaching plugin PosTrials: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:50:35 [W] __init__:43 An error occurred when attaching plugin PosTrials2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:50:35 [D] gui:432 Load the GUI state from `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:50:38 [D] gui:173 Load the geometry state. 2017-08-28 15:50:40 [D] supervisor:342 Select cluster(s): 4. 2017-08-28 15:50:40 [E] cli:36 An error has occurred (AssertionError): 2017-08-28 15:50:40 [D] cli:39 Traceback (most recent call last): File "C:\Users\peter\Anaconda3\envs\phy\lib\site-packages\phy\cluster\views\base.py", line 92, in update_view self.on_select(cluster_ids, **kwargs) File "C:\Users\peter\Anaconda3\envs\phy\lib\site-packages\phy\cluster\views\feature.py", line 291, in on_select self._plot_points(i, j, dim_x, dim_y, background) File "C:\Users\peter\Anaconda3\envs\phy\lib\site-packages\phy\cluster\views\feature.py", line 187, in _plot_points assert px.data.shape == py.data.shape AssertionError 2017-08-28 15:50:45 [D] gui:179 Save the geometry state. 2017-08-28 15:50:45 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:50:45 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:50:45 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:50:45 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:50:45 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:50:45 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:50:45 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:50:45 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:50:45 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 15:50:46 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 15:50:46 [D] context:102 Save memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 15:50:46 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 15:50:46 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 15:51:59 [D] model:380 Loading spike clusters. 2017-08-28 15:51:59 [D] model:395 Loading templates. 2017-08-28 15:51:59 [D] model:416 Loading the whitening matrix. 2017-08-28 15:51:59 [D] model:420 Loading the inverse of the whitening matrix. 2017-08-28 15:51:59 [D] model:101 Loading traces at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Peter_MS12_170714_122034_concat.dat`. 2017-08-28 15:51:59 [D] context:67 Initialize joblib cache dir at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy`. 2017-08-28 15:51:59 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 15:51:59 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 15:51:59 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 15:51:59 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 15:51:59 [D] context:91 Load memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 15:51:59 [D] context:148 The file `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\new_cluster_id.pkl` doesn't exist. 2017-08-28 15:51:59 [D] context:134 Save data to `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\spikes_per_cluster.pkl`. 2017-08-28 15:51:59 [D] config:46 Load config file `C:\Users\peter\.phy\phy_config.py`. 2017-08-28 15:51:59 [W] __init__:36 The plugin ControllerSettings couldn't be found. 2017-08-28 15:51:59 [W] __init__:43 An error occurred when attaching plugin SpatialMap: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:51:59 [W] __init__:43 An error occurred when attaching plugin PhasePrecession: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:51:59 [W] __init__:43 An error occurred when attaching plugin PhasePrecession2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:51:59 [W] __init__:43 An error occurred when attaching plugin PosTrials: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:51:59 [W] __init__:43 An error occurred when attaching plugin PosTrials2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:51:59 [D] gui:432 Load the GUI state from `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:52:02 [D] gui:173 Load the geometry state. 2017-08-28 15:52:03 [D] gui:179 Save the geometry state. 2017-08-28 15:52:03 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:52:03 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:52:03 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:52:03 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:52:03 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:52:03 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:52:03 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:52:03 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:52:03 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 15:52:03 [D] context:102 Save memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 15:52:03 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 15:52:03 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 15:52:03 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 15:52:18 [D] model:380 Loading spike clusters. 2017-08-28 15:52:18 [D] model:395 Loading templates. 2017-08-28 15:52:18 [D] model:416 Loading the whitening matrix. 2017-08-28 15:52:18 [D] model:420 Loading the inverse of the whitening matrix. 2017-08-28 15:52:18 [D] model:101 Loading traces at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Peter_MS12_170714_122034_concat.dat`. 2017-08-28 15:52:18 [D] context:67 Initialize joblib cache dir at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy`. 2017-08-28 15:52:18 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 15:52:18 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 15:52:18 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 15:52:18 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 15:52:18 [D] context:91 Load memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 15:52:18 [D] context:148 The file `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\new_cluster_id.pkl` doesn't exist. 2017-08-28 15:52:18 [D] context:134 Save data to `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\spikes_per_cluster.pkl`. 2017-08-28 15:52:18 [D] config:46 Load config file `C:\Users\peter\.phy\phy_config.py`. 2017-08-28 15:52:18 [D] __init__:40 Attached plugin ControllerSettings. 2017-08-28 15:52:18 [W] __init__:43 An error occurred when attaching plugin SpatialMap: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:52:18 [W] __init__:43 An error occurred when attaching plugin PhasePrecession: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:52:18 [W] __init__:43 An error occurred when attaching plugin PhasePrecession2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:52:18 [W] __init__:43 An error occurred when attaching plugin PosTrials: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:52:19 [W] __init__:43 An error occurred when attaching plugin PosTrials2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:52:19 [D] gui:432 Load the GUI state from `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:52:22 [D] gui:173 Load the geometry state. 2017-08-28 15:52:23 [D] gui:179 Save the geometry state. 2017-08-28 15:52:23 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:52:23 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:52:23 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:52:23 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:52:23 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:52:23 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:52:23 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:52:23 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:52:23 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 15:52:23 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 15:52:23 [D] context:102 Save memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 15:52:23 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 15:52:23 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 15:52:32 [D] model:380 Loading spike clusters. 2017-08-28 15:52:32 [D] model:395 Loading templates. 2017-08-28 15:52:32 [D] model:416 Loading the whitening matrix. 2017-08-28 15:52:32 [D] model:420 Loading the inverse of the whitening matrix. 2017-08-28 15:52:32 [D] model:101 Loading traces at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Peter_MS12_170714_122034_concat.dat`. 2017-08-28 15:52:32 [D] context:67 Initialize joblib cache dir at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy`. 2017-08-28 15:52:32 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 15:52:32 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 15:52:32 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 15:52:32 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 15:52:32 [D] context:91 Load memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 15:52:32 [D] context:148 The file `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\new_cluster_id.pkl` doesn't exist. 2017-08-28 15:52:32 [D] context:134 Save data to `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\spikes_per_cluster.pkl`. 2017-08-28 15:52:33 [D] config:46 Load config file `C:\Users\peter\.phy\phy_config.py`. 2017-08-28 15:52:33 [D] __init__:40 Attached plugin ControllerSettings. 2017-08-28 15:52:33 [W] __init__:43 An error occurred when attaching plugin SpatialMap: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:52:33 [W] __init__:43 An error occurred when attaching plugin PhasePrecession: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:52:33 [W] __init__:43 An error occurred when attaching plugin PhasePrecession2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:52:33 [W] __init__:43 An error occurred when attaching plugin PosTrials: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:52:33 [W] __init__:43 An error occurred when attaching plugin PosTrials2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:52:33 [D] gui:432 Load the GUI state from `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:52:36 [D] gui:173 Load the geometry state. 2017-08-28 15:52:37 [D] gui:179 Save the geometry state. 2017-08-28 15:52:37 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:52:37 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:52:37 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:52:37 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:52:37 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:52:37 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:52:37 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:52:37 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:52:37 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 15:52:37 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 15:52:37 [D] context:102 Save memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 15:52:37 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 15:52:37 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 15:53:58 [D] model:380 Loading spike clusters. 2017-08-28 15:53:58 [D] model:395 Loading templates. 2017-08-28 15:53:58 [D] model:416 Loading the whitening matrix. 2017-08-28 15:53:58 [D] model:420 Loading the inverse of the whitening matrix. 2017-08-28 15:53:58 [D] model:101 Loading traces at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Peter_MS12_170714_122034_concat.dat`. 2017-08-28 15:53:58 [D] context:67 Initialize joblib cache dir at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy`. 2017-08-28 15:53:58 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 15:53:58 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 15:53:58 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 15:53:58 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 15:53:58 [D] context:91 Load memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 15:53:58 [D] context:148 The file `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\new_cluster_id.pkl` doesn't exist. 2017-08-28 15:53:58 [D] context:134 Save data to `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\spikes_per_cluster.pkl`. 2017-08-28 15:53:58 [D] config:46 Load config file `C:\Users\peter\.phy\phy_config.py`. 2017-08-28 15:53:58 [D] __init__:40 Attached plugin ControllerSettings. 2017-08-28 15:53:58 [W] __init__:43 An error occurred when attaching plugin SpatialMap: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:53:58 [W] __init__:43 An error occurred when attaching plugin PhasePrecession: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:53:58 [W] __init__:43 An error occurred when attaching plugin PhasePrecession2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:53:58 [W] __init__:43 An error occurred when attaching plugin PosTrials: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:53:58 [W] __init__:43 An error occurred when attaching plugin PosTrials2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:53:58 [D] gui:432 Load the GUI state from `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:54:01 [D] gui:173 Load the geometry state. 2017-08-28 15:54:03 [D] gui:179 Save the geometry state. 2017-08-28 15:54:03 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:54:03 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:54:03 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:54:03 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:54:03 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:54:03 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:54:03 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:54:03 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:54:03 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 15:54:03 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 15:54:03 [D] context:102 Save memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 15:54:03 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 15:54:03 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 15:54:27 [D] model:380 Loading spike clusters. 2017-08-28 15:54:27 [D] model:395 Loading templates. 2017-08-28 15:54:27 [D] model:416 Loading the whitening matrix. 2017-08-28 15:54:27 [D] model:420 Loading the inverse of the whitening matrix. 2017-08-28 15:54:27 [D] model:101 Loading traces at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Peter_MS12_170714_122034_concat.dat`. 2017-08-28 15:54:27 [D] context:67 Initialize joblib cache dir at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy`. 2017-08-28 15:54:27 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 15:54:27 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 15:54:27 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 15:54:27 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 15:54:27 [D] context:91 Load memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 15:54:27 [D] context:148 The file `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\new_cluster_id.pkl` doesn't exist. 2017-08-28 15:54:27 [D] context:134 Save data to `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\spikes_per_cluster.pkl`. 2017-08-28 15:54:27 [D] config:46 Load config file `C:\Users\peter\.phy\phy_config.py`. 2017-08-28 15:54:27 [D] __init__:40 Attached plugin ControllerSettings. 2017-08-28 15:54:27 [W] __init__:43 An error occurred when attaching plugin SpatialMap: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:54:27 [W] __init__:43 An error occurred when attaching plugin PhasePrecession: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:54:27 [W] __init__:43 An error occurred when attaching plugin PhasePrecession2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:54:27 [W] __init__:43 An error occurred when attaching plugin PosTrials: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:54:27 [W] __init__:43 An error occurred when attaching plugin PosTrials2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:54:27 [D] gui:432 Load the GUI state from `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:54:30 [D] gui:173 Load the geometry state. 2017-08-28 15:54:32 [D] gui:179 Save the geometry state. 2017-08-28 15:54:32 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:54:32 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:54:32 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:54:32 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:54:32 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:54:32 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:54:32 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:54:32 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:54:32 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 15:54:32 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 15:54:32 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 15:54:32 [D] context:102 Save memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 15:54:32 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 15:54:38 [D] model:380 Loading spike clusters. 2017-08-28 15:54:38 [D] model:395 Loading templates. 2017-08-28 15:54:38 [D] model:416 Loading the whitening matrix. 2017-08-28 15:54:38 [D] model:420 Loading the inverse of the whitening matrix. 2017-08-28 15:54:38 [D] model:101 Loading traces at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Peter_MS12_170714_122034_concat.dat`. 2017-08-28 15:54:38 [D] context:67 Initialize joblib cache dir at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy`. 2017-08-28 15:54:38 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 15:54:38 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 15:54:38 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 15:54:38 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 15:54:38 [D] context:91 Load memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 15:54:38 [D] context:148 The file `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\new_cluster_id.pkl` doesn't exist. 2017-08-28 15:54:38 [D] context:134 Save data to `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\spikes_per_cluster.pkl`. 2017-08-28 15:54:39 [D] config:46 Load config file `C:\Users\peter\.phy\phy_config.py`. 2017-08-28 15:54:39 [W] __init__:36 The plugin ControllerSettings couldn't be found. 2017-08-28 15:54:39 [W] __init__:43 An error occurred when attaching plugin SpatialMap: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:54:39 [W] __init__:43 An error occurred when attaching plugin PhasePrecession: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:54:39 [W] __init__:43 An error occurred when attaching plugin PhasePrecession2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:54:39 [W] __init__:43 An error occurred when attaching plugin PosTrials: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:54:39 [W] __init__:43 An error occurred when attaching plugin PosTrials2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:54:39 [D] gui:432 Load the GUI state from `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:54:41 [D] gui:173 Load the geometry state. 2017-08-28 15:54:43 [D] gui:179 Save the geometry state. 2017-08-28 15:54:43 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:54:43 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:54:43 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:54:43 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:54:43 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:54:43 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:54:43 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:54:43 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:54:43 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 15:54:43 [D] context:102 Save memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 15:54:43 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 15:54:43 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 15:54:43 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 15:54:50 [D] model:380 Loading spike clusters. 2017-08-28 15:54:50 [D] model:395 Loading templates. 2017-08-28 15:54:50 [D] model:416 Loading the whitening matrix. 2017-08-28 15:54:50 [D] model:420 Loading the inverse of the whitening matrix. 2017-08-28 15:54:50 [D] model:101 Loading traces at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Peter_MS12_170714_122034_concat.dat`. 2017-08-28 15:54:50 [D] context:67 Initialize joblib cache dir at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy`. 2017-08-28 15:54:50 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 15:54:50 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 15:54:50 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 15:54:50 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 15:54:50 [D] context:91 Load memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 15:54:50 [D] context:148 The file `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\new_cluster_id.pkl` doesn't exist. 2017-08-28 15:54:50 [D] context:134 Save data to `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\spikes_per_cluster.pkl`. 2017-08-28 15:54:50 [D] config:46 Load config file `C:\Users\peter\.phy\phy_config.py`. 2017-08-28 15:54:50 [D] __init__:40 Attached plugin ControllerSettings. 2017-08-28 15:54:50 [W] __init__:43 An error occurred when attaching plugin SpatialMap: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:54:50 [W] __init__:43 An error occurred when attaching plugin PhasePrecession: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:54:50 [W] __init__:43 An error occurred when attaching plugin PhasePrecession2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:54:50 [W] __init__:43 An error occurred when attaching plugin PosTrials: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:54:50 [W] __init__:43 An error occurred when attaching plugin PosTrials2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:54:50 [D] gui:432 Load the GUI state from `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:54:53 [D] gui:173 Load the geometry state. 2017-08-28 15:54:54 [D] gui:179 Save the geometry state. 2017-08-28 15:54:54 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:54:54 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:54:54 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:54:54 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:54:54 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:54:54 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:54:54 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:54:54 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:54:54 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 15:54:54 [D] context:102 Save memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 15:54:54 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 15:54:54 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 15:54:54 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 15:56:32 [D] model:380 Loading spike clusters. 2017-08-28 15:56:32 [D] model:395 Loading templates. 2017-08-28 15:56:32 [D] model:416 Loading the whitening matrix. 2017-08-28 15:56:32 [D] model:420 Loading the inverse of the whitening matrix. 2017-08-28 15:56:32 [D] model:101 Loading traces at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Peter_MS12_170714_122034_concat.dat`. 2017-08-28 15:56:32 [D] context:67 Initialize joblib cache dir at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy`. 2017-08-28 15:56:32 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 15:56:32 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 15:56:32 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 15:56:32 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 15:56:32 [D] context:91 Load memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 15:56:33 [D] context:148 The file `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\new_cluster_id.pkl` doesn't exist. 2017-08-28 15:56:33 [D] context:134 Save data to `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\spikes_per_cluster.pkl`. 2017-08-28 15:56:33 [D] config:46 Load config file `C:\Users\peter\.phy\phy_config.py`. 2017-08-28 15:56:33 [D] __init__:40 Attached plugin ControllerSettings. 2017-08-28 15:56:33 [W] __init__:43 An error occurred when attaching plugin SpatialMap: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:56:33 [W] __init__:43 An error occurred when attaching plugin PhasePrecession: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:56:33 [W] __init__:43 An error occurred when attaching plugin PhasePrecession2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:56:33 [W] __init__:43 An error occurred when attaching plugin PosTrials: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:56:33 [W] __init__:43 An error occurred when attaching plugin PosTrials2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:56:33 [D] gui:432 Load the GUI state from `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:56:37 [D] gui:173 Load the geometry state. 2017-08-28 15:56:38 [D] supervisor:342 Select cluster(s): 4. 2017-08-28 15:56:41 [W] ControllerSettings:174 Running MahalanobisDist... 2017-08-28 15:56:41 [W] ControllerSettings:201 1 2017-08-28 15:56:43 [W] ControllerSettings:210 Calculating the Mahalanobis distance 2017-08-28 15:56:43 [E] cli:36 An error has occurred (IndexError): arrays used as indices must be of integer (or boolean) type 2017-08-28 15:56:43 [D] cli:39 Traceback (most recent call last): File "C:\Users\peter\Anaconda3\envs\phy\lib\site-packages\phy\gui\actions.py", line 85, in wrapped return f() File "C:\Users\peter\Dropbox\PhyPlugins\plugins\ControllerSettings.py", line 211, in MahalanobisDist MD = MahalanobisDistCalc(x,x) File "C:\Users\peter\Dropbox\PhyPlugins\plugins\ControllerSettings.py", line 194, in MahalanobisDistCalc M = m[np.ones((ry,1)),:] IndexError: arrays used as indices must be of integer (or boolean) type 2017-08-28 15:56:54 [D] gui:179 Save the geometry state. 2017-08-28 15:56:54 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:56:54 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:56:54 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:56:54 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:56:54 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:56:54 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:56:54 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:56:54 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:56:54 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 15:56:54 [D] context:102 Save memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 15:56:54 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 15:56:54 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 15:56:54 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 15:58:03 [D] model:380 Loading spike clusters. 2017-08-28 15:58:03 [D] model:395 Loading templates. 2017-08-28 15:58:03 [D] model:416 Loading the whitening matrix. 2017-08-28 15:58:03 [D] model:420 Loading the inverse of the whitening matrix. 2017-08-28 15:58:03 [D] model:101 Loading traces at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Peter_MS12_170714_122034_concat.dat`. 2017-08-28 15:58:03 [D] context:67 Initialize joblib cache dir at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy`. 2017-08-28 15:58:03 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 15:58:03 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 15:58:03 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 15:58:03 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 15:58:03 [D] context:91 Load memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 15:58:03 [D] context:148 The file `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\new_cluster_id.pkl` doesn't exist. 2017-08-28 15:58:03 [D] context:134 Save data to `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\spikes_per_cluster.pkl`. 2017-08-28 15:58:03 [D] config:46 Load config file `C:\Users\peter\.phy\phy_config.py`. 2017-08-28 15:58:03 [D] __init__:40 Attached plugin ControllerSettings. 2017-08-28 15:58:03 [W] __init__:43 An error occurred when attaching plugin SpatialMap: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:58:03 [W] __init__:43 An error occurred when attaching plugin PhasePrecession: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:58:03 [W] __init__:43 An error occurred when attaching plugin PhasePrecession2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:58:03 [W] __init__:43 An error occurred when attaching plugin PosTrials: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:58:03 [W] __init__:43 An error occurred when attaching plugin PosTrials2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 15:58:03 [D] gui:432 Load the GUI state from `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:58:07 [D] gui:173 Load the geometry state. 2017-08-28 15:58:09 [D] supervisor:342 Select cluster(s): 6. 2017-08-28 15:58:45 [D] supervisor:342 Select cluster(s): 6. 2017-08-28 15:58:51 [W] ControllerSettings:174 Running MahalanobisDist... 2017-08-28 15:58:51 [W] ControllerSettings:207 1 2017-08-28 15:58:51 [W] ControllerSettings:216 Calculating the Mahalanobis distance 2017-08-28 15:58:51 [W] ControllerSettings:192 1 2017-08-28 15:58:51 [W] ControllerSettings:195 2 2017-08-28 15:58:51 [E] cli:36 An error has occurred (IndexError): arrays used as indices must be of integer (or boolean) type 2017-08-28 15:58:51 [D] cli:39 Traceback (most recent call last): File "C:\Users\peter\Anaconda3\envs\phy\lib\site-packages\phy\gui\actions.py", line 85, in wrapped return f() File "C:\Users\peter\Dropbox\PhyPlugins\plugins\ControllerSettings.py", line 217, in MahalanobisDist MD = MahalanobisDistCalc(x,x) File "C:\Users\peter\Dropbox\PhyPlugins\plugins\ControllerSettings.py", line 196, in MahalanobisDistCalc M = m[np.ones((ry,1)),:] IndexError: arrays used as indices must be of integer (or boolean) type 2017-08-28 15:58:55 [D] gui:179 Save the geometry state. 2017-08-28 15:58:55 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:58:55 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:58:55 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:58:55 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:58:55 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:58:55 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:58:55 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:58:55 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 15:58:55 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 15:58:55 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 15:58:55 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 15:58:55 [D] context:102 Save memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 15:58:55 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 16:02:09 [D] model:380 Loading spike clusters. 2017-08-28 16:02:09 [D] model:395 Loading templates. 2017-08-28 16:02:09 [D] model:416 Loading the whitening matrix. 2017-08-28 16:02:09 [D] model:420 Loading the inverse of the whitening matrix. 2017-08-28 16:02:09 [D] model:101 Loading traces at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Peter_MS12_170714_122034_concat.dat`. 2017-08-28 16:02:09 [D] context:67 Initialize joblib cache dir at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy`. 2017-08-28 16:02:09 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 16:02:09 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 16:02:09 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 16:02:09 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 16:02:09 [D] context:91 Load memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 16:02:09 [D] context:148 The file `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\new_cluster_id.pkl` doesn't exist. 2017-08-28 16:02:09 [D] context:134 Save data to `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\spikes_per_cluster.pkl`. 2017-08-28 16:02:09 [D] config:46 Load config file `C:\Users\peter\.phy\phy_config.py`. 2017-08-28 16:02:09 [D] __init__:40 Attached plugin ControllerSettings. 2017-08-28 16:02:09 [W] __init__:43 An error occurred when attaching plugin SpatialMap: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:02:09 [W] __init__:43 An error occurred when attaching plugin PhasePrecession: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:02:09 [W] __init__:43 An error occurred when attaching plugin PhasePrecession2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:02:09 [W] __init__:43 An error occurred when attaching plugin PosTrials: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:02:09 [W] __init__:43 An error occurred when attaching plugin PosTrials2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:02:09 [D] gui:432 Load the GUI state from `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:02:13 [D] gui:173 Load the geometry state. 2017-08-28 16:02:14 [D] supervisor:342 Select cluster(s): 6. 2017-08-28 16:02:17 [W] ControllerSettings:174 Running MahalanobisDist... 2017-08-28 16:02:17 [W] ControllerSettings:207 1 2017-08-28 16:02:17 [W] ControllerSettings:216 Calculating the Mahalanobis distance 2017-08-28 16:02:17 [W] ControllerSettings:192 1 2017-08-28 16:02:17 [W] ControllerSettings:195 2 2017-08-28 16:02:17 [E] cli:36 An error has occurred (IndexError): arrays used as indices must be of integer (or boolean) type 2017-08-28 16:02:17 [D] cli:39 Traceback (most recent call last): File "C:\Users\peter\Anaconda3\envs\phy\lib\site-packages\phy\gui\actions.py", line 85, in wrapped return f() File "C:\Users\peter\Dropbox\PhyPlugins\plugins\ControllerSettings.py", line 217, in MahalanobisDist MD = MahalanobisDistCalc(x,x) File "C:\Users\peter\Dropbox\PhyPlugins\plugins\ControllerSettings.py", line 196, in MahalanobisDistCalc M = m[np.zeros((ry,1)),:] IndexError: arrays used as indices must be of integer (or boolean) type 2017-08-28 16:02:22 [D] gui:179 Save the geometry state. 2017-08-28 16:02:22 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:02:22 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:02:22 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:02:22 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:02:22 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:02:22 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:02:22 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:02:22 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:02:22 [D] context:102 Save memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 16:02:22 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 16:02:22 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 16:02:22 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 16:02:22 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 16:06:46 [D] model:380 Loading spike clusters. 2017-08-28 16:06:46 [D] model:395 Loading templates. 2017-08-28 16:06:46 [D] model:416 Loading the whitening matrix. 2017-08-28 16:06:46 [D] model:420 Loading the inverse of the whitening matrix. 2017-08-28 16:06:46 [D] model:101 Loading traces at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Peter_MS12_170714_122034_concat.dat`. 2017-08-28 16:06:46 [D] context:67 Initialize joblib cache dir at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy`. 2017-08-28 16:06:46 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 16:06:46 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 16:06:46 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 16:06:46 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 16:06:46 [D] context:91 Load memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 16:06:46 [D] context:148 The file `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\new_cluster_id.pkl` doesn't exist. 2017-08-28 16:06:46 [D] context:134 Save data to `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\spikes_per_cluster.pkl`. 2017-08-28 16:06:47 [D] config:46 Load config file `C:\Users\peter\.phy\phy_config.py`. 2017-08-28 16:06:47 [D] __init__:40 Attached plugin ControllerSettings. 2017-08-28 16:06:47 [W] __init__:43 An error occurred when attaching plugin SpatialMap: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:06:47 [W] __init__:43 An error occurred when attaching plugin PhasePrecession: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:06:47 [W] __init__:43 An error occurred when attaching plugin PhasePrecession2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:06:47 [W] __init__:43 An error occurred when attaching plugin PosTrials: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:06:47 [W] __init__:43 An error occurred when attaching plugin PosTrials2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:06:47 [D] gui:432 Load the GUI state from `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:06:50 [D] gui:173 Load the geometry state. 2017-08-28 16:06:53 [D] supervisor:342 Select cluster(s): 6. 2017-08-28 16:06:59 [D] gui:179 Save the geometry state. 2017-08-28 16:06:59 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:06:59 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:06:59 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:06:59 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:06:59 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:06:59 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:06:59 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:06:59 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:06:59 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 16:06:59 [D] context:102 Save memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 16:06:59 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 16:06:59 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 16:06:59 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 16:08:13 [D] model:380 Loading spike clusters. 2017-08-28 16:08:13 [D] model:395 Loading templates. 2017-08-28 16:08:13 [D] model:416 Loading the whitening matrix. 2017-08-28 16:08:13 [D] model:420 Loading the inverse of the whitening matrix. 2017-08-28 16:08:13 [D] model:101 Loading traces at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Peter_MS12_170714_122034_concat.dat`. 2017-08-28 16:08:13 [D] context:67 Initialize joblib cache dir at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy`. 2017-08-28 16:08:13 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 16:08:13 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 16:08:13 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 16:08:13 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 16:08:13 [D] context:91 Load memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 16:08:13 [D] context:148 The file `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\new_cluster_id.pkl` doesn't exist. 2017-08-28 16:08:13 [D] context:134 Save data to `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\spikes_per_cluster.pkl`. 2017-08-28 16:08:13 [D] config:46 Load config file `C:\Users\peter\.phy\phy_config.py`. 2017-08-28 16:08:13 [D] __init__:40 Attached plugin ControllerSettings. 2017-08-28 16:08:13 [W] __init__:43 An error occurred when attaching plugin SpatialMap: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:08:13 [W] __init__:43 An error occurred when attaching plugin PhasePrecession: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:08:13 [W] __init__:43 An error occurred when attaching plugin PhasePrecession2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:08:13 [W] __init__:43 An error occurred when attaching plugin PosTrials: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:08:13 [W] __init__:43 An error occurred when attaching plugin PosTrials2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:08:13 [D] gui:432 Load the GUI state from `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:08:16 [D] gui:173 Load the geometry state. 2017-08-28 16:08:18 [D] supervisor:342 Select cluster(s): 6. 2017-08-28 16:08:21 [W] ControllerSettings:174 Running MahalanobisDist... 2017-08-28 16:08:21 [W] ControllerSettings:210 1 2017-08-28 16:08:21 [W] ControllerSettings:219 Calculating the Mahalanobis distance 2017-08-28 16:08:21 [W] ControllerSettings:192 1 2017-08-28 16:08:21 [W] ControllerSettings:198 2 2017-08-28 16:08:21 [E] cli:36 An error has occurred (IndexError): arrays used as indices must be of integer (or boolean) type 2017-08-28 16:08:21 [D] cli:39 Traceback (most recent call last): File "C:\Users\peter\Anaconda3\envs\phy\lib\site-packages\phy\gui\actions.py", line 85, in wrapped return f() File "C:\Users\peter\Dropbox\PhyPlugins\plugins\ControllerSettings.py", line 220, in MahalanobisDist MD = MahalanobisDistCalc(x,x) File "C:\Users\peter\Dropbox\PhyPlugins\plugins\ControllerSettings.py", line 199, in MahalanobisDistCalc M = m[np.zeros((ry,1)),:] IndexError: arrays used as indices must be of integer (or boolean) type 2017-08-28 16:08:28 [D] supervisor:342 Select cluster(s): 13. 2017-08-28 16:08:33 [W] ControllerSettings:174 Running MahalanobisDist... 2017-08-28 16:08:33 [W] ControllerSettings:210 1 2017-08-28 16:08:33 [W] ControllerSettings:219 Calculating the Mahalanobis distance 2017-08-28 16:08:33 [W] ControllerSettings:192 1 2017-08-28 16:08:33 [W] ControllerSettings:198 2 2017-08-28 16:08:33 [E] cli:36 An error has occurred (IndexError): arrays used as indices must be of integer (or boolean) type 2017-08-28 16:08:33 [D] cli:39 Traceback (most recent call last): File "C:\Users\peter\Anaconda3\envs\phy\lib\site-packages\phy\gui\actions.py", line 85, in wrapped return f() File "C:\Users\peter\Dropbox\PhyPlugins\plugins\ControllerSettings.py", line 220, in MahalanobisDist MD = MahalanobisDistCalc(x,x) File "C:\Users\peter\Dropbox\PhyPlugins\plugins\ControllerSettings.py", line 199, in MahalanobisDistCalc M = m[np.zeros((ry,1)),:] IndexError: arrays used as indices must be of integer (or boolean) type 2017-08-28 16:08:36 [D] gui:179 Save the geometry state. 2017-08-28 16:08:36 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:08:36 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:08:36 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:08:36 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:08:36 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:08:36 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:08:36 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:08:36 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:08:36 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 16:08:36 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 16:08:36 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 16:08:36 [D] context:102 Save memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 16:08:36 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 16:10:35 [D] model:380 Loading spike clusters. 2017-08-28 16:10:35 [D] model:395 Loading templates. 2017-08-28 16:10:35 [D] model:416 Loading the whitening matrix. 2017-08-28 16:10:35 [D] model:420 Loading the inverse of the whitening matrix. 2017-08-28 16:10:35 [D] model:101 Loading traces at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Peter_MS12_170714_122034_concat.dat`. 2017-08-28 16:10:35 [D] context:67 Initialize joblib cache dir at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy`. 2017-08-28 16:10:35 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 16:10:35 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 16:10:35 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 16:10:35 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 16:10:35 [D] context:91 Load memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 16:10:35 [D] context:148 The file `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\new_cluster_id.pkl` doesn't exist. 2017-08-28 16:10:35 [D] context:134 Save data to `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\spikes_per_cluster.pkl`. 2017-08-28 16:10:35 [D] config:46 Load config file `C:\Users\peter\.phy\phy_config.py`. 2017-08-28 16:10:35 [D] __init__:40 Attached plugin ControllerSettings. 2017-08-28 16:10:35 [W] __init__:43 An error occurred when attaching plugin SpatialMap: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:10:35 [W] __init__:43 An error occurred when attaching plugin PhasePrecession: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:10:35 [W] __init__:43 An error occurred when attaching plugin PhasePrecession2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:10:35 [W] __init__:43 An error occurred when attaching plugin PosTrials: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:10:35 [W] __init__:43 An error occurred when attaching plugin PosTrials2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:10:35 [D] gui:432 Load the GUI state from `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:10:38 [D] gui:173 Load the geometry state. 2017-08-28 16:11:50 [D] supervisor:342 Select cluster(s): 6. 2017-08-28 16:11:53 [W] ControllerSettings:174 Running MahalanobisDist... 2017-08-28 16:11:53 [W] ControllerSettings:209 1 2017-08-28 16:11:53 [W] ControllerSettings:218 Calculating the Mahalanobis distance 2017-08-28 16:11:53 [W] ControllerSettings:192 1 2017-08-28 16:11:53 [W] ControllerSettings:197 2 2017-08-28 16:11:53 [E] cli:36 An error has occurred (IndexError): too many indices for array 2017-08-28 16:11:53 [D] cli:39 Traceback (most recent call last): File "C:\Users\peter\Anaconda3\envs\phy\lib\site-packages\phy\gui\actions.py", line 85, in wrapped return f() File "C:\Users\peter\Dropbox\PhyPlugins\plugins\ControllerSettings.py", line 219, in MahalanobisDist MD = MahalanobisDistCalc(x,x) File "C:\Users\peter\Dropbox\PhyPlugins\plugins\ControllerSettings.py", line 198, in MahalanobisDistCalc M = m[np.zeros((ry,1), dtype=np.int),:] IndexError: too many indices for array 2017-08-28 16:12:02 [D] gui:179 Save the geometry state. 2017-08-28 16:12:02 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:12:02 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:12:02 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:12:02 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:12:02 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:12:02 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:12:02 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:12:02 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:12:02 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 16:12:02 [D] context:102 Save memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 16:12:02 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 16:12:02 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 16:12:02 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 16:13:17 [D] model:380 Loading spike clusters. 2017-08-28 16:13:17 [D] model:395 Loading templates. 2017-08-28 16:13:17 [D] model:416 Loading the whitening matrix. 2017-08-28 16:13:17 [D] model:420 Loading the inverse of the whitening matrix. 2017-08-28 16:13:17 [D] model:101 Loading traces at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Peter_MS12_170714_122034_concat.dat`. 2017-08-28 16:13:17 [D] context:67 Initialize joblib cache dir at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy`. 2017-08-28 16:13:17 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 16:13:17 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 16:13:17 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 16:13:17 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 16:13:17 [D] context:91 Load memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 16:13:17 [D] context:148 The file `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\new_cluster_id.pkl` doesn't exist. 2017-08-28 16:13:17 [D] context:134 Save data to `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\spikes_per_cluster.pkl`. 2017-08-28 16:13:17 [D] config:46 Load config file `C:\Users\peter\.phy\phy_config.py`. 2017-08-28 16:13:17 [D] __init__:40 Attached plugin ControllerSettings. 2017-08-28 16:13:17 [W] __init__:43 An error occurred when attaching plugin SpatialMap: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:13:17 [W] __init__:43 An error occurred when attaching plugin PhasePrecession: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:13:17 [W] __init__:43 An error occurred when attaching plugin PhasePrecession2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:13:17 [W] __init__:43 An error occurred when attaching plugin PosTrials: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:13:17 [W] __init__:43 An error occurred when attaching plugin PosTrials2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:13:17 [D] gui:432 Load the GUI state from `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:13:20 [D] gui:173 Load the geometry state. 2017-08-28 16:13:25 [D] supervisor:342 Select cluster(s): 6. 2017-08-28 16:13:27 [W] ControllerSettings:174 Running MahalanobisDist... 2017-08-28 16:13:27 [W] ControllerSettings:217 Calculating the Mahalanobis distance 2017-08-28 16:13:27 [W] ControllerSettings:192 1 2017-08-28 16:13:27 [W] ControllerSettings:197 2 2017-08-28 16:13:27 [E] cli:36 An error has occurred (IndexError): too many indices for array 2017-08-28 16:13:27 [D] cli:39 Traceback (most recent call last): File "C:\Users\peter\Anaconda3\envs\phy\lib\site-packages\phy\gui\actions.py", line 85, in wrapped return f() File "C:\Users\peter\Dropbox\PhyPlugins\plugins\ControllerSettings.py", line 218, in MahalanobisDist MD = MahalanobisDistCalc(x,x) File "C:\Users\peter\Dropbox\PhyPlugins\plugins\ControllerSettings.py", line 198, in MahalanobisDistCalc M = m[np.ones((ry,1), dtype=np.int),:] IndexError: too many indices for array 2017-08-28 16:13:30 [D] gui:179 Save the geometry state. 2017-08-28 16:13:30 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:13:30 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:13:30 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:13:30 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:13:30 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:13:30 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:13:30 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:13:30 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:13:30 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 16:13:30 [D] context:102 Save memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 16:13:30 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 16:13:30 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 16:13:30 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 16:14:04 [D] model:380 Loading spike clusters. 2017-08-28 16:14:04 [D] model:395 Loading templates. 2017-08-28 16:14:04 [D] model:416 Loading the whitening matrix. 2017-08-28 16:14:04 [D] model:420 Loading the inverse of the whitening matrix. 2017-08-28 16:14:04 [D] model:101 Loading traces at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Peter_MS12_170714_122034_concat.dat`. 2017-08-28 16:14:04 [D] context:67 Initialize joblib cache dir at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy`. 2017-08-28 16:14:04 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 16:14:04 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 16:14:04 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 16:14:04 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 16:14:04 [D] context:91 Load memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 16:14:04 [D] context:148 The file `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\new_cluster_id.pkl` doesn't exist. 2017-08-28 16:14:05 [D] context:134 Save data to `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\spikes_per_cluster.pkl`. 2017-08-28 16:14:05 [D] config:46 Load config file `C:\Users\peter\.phy\phy_config.py`. 2017-08-28 16:14:05 [D] __init__:40 Attached plugin ControllerSettings. 2017-08-28 16:14:05 [W] __init__:43 An error occurred when attaching plugin SpatialMap: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:14:05 [W] __init__:43 An error occurred when attaching plugin PhasePrecession: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:14:05 [W] __init__:43 An error occurred when attaching plugin PhasePrecession2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:14:05 [W] __init__:43 An error occurred when attaching plugin PosTrials: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:14:05 [W] __init__:43 An error occurred when attaching plugin PosTrials2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:14:05 [D] gui:432 Load the GUI state from `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:14:08 [D] gui:173 Load the geometry state. 2017-08-28 16:14:10 [D] supervisor:342 Select cluster(s): 5. 2017-08-28 16:14:13 [D] supervisor:342 Select cluster(s): 6. 2017-08-28 16:14:16 [W] ControllerSettings:174 Running MahalanobisDist... 2017-08-28 16:14:16 [W] ControllerSettings:218 Calculating the Mahalanobis distance 2017-08-28 16:14:16 [W] ControllerSettings:192 1 2017-08-28 16:14:16 [W] ControllerSettings:197 (36,) 2017-08-28 16:14:16 [W] ControllerSettings:198 2 2017-08-28 16:14:16 [E] cli:36 An error has occurred (IndexError): too many indices for array 2017-08-28 16:14:16 [D] cli:39 Traceback (most recent call last): File "C:\Users\peter\Anaconda3\envs\phy\lib\site-packages\phy\gui\actions.py", line 85, in wrapped return f() File "C:\Users\peter\Dropbox\PhyPlugins\plugins\ControllerSettings.py", line 219, in MahalanobisDist MD = MahalanobisDistCalc(x,x) File "C:\Users\peter\Dropbox\PhyPlugins\plugins\ControllerSettings.py", line 199, in MahalanobisDistCalc M = m[np.ones((ry,1), dtype=np.int),:] IndexError: too many indices for array 2017-08-28 16:14:18 [D] gui:179 Save the geometry state. 2017-08-28 16:14:18 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:14:18 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:14:18 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:14:18 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:14:18 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:14:18 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:14:18 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:14:18 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:14:18 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 16:14:18 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 16:14:18 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 16:14:18 [D] context:102 Save memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 16:14:18 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 16:22:29 [D] model:380 Loading spike clusters. 2017-08-28 16:22:29 [D] model:395 Loading templates. 2017-08-28 16:22:29 [D] model:416 Loading the whitening matrix. 2017-08-28 16:22:29 [D] model:420 Loading the inverse of the whitening matrix. 2017-08-28 16:22:29 [D] model:101 Loading traces at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Peter_MS12_170714_122034_concat.dat`. 2017-08-28 16:22:29 [D] context:67 Initialize joblib cache dir at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy`. 2017-08-28 16:22:29 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 16:22:29 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 16:22:29 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 16:22:29 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 16:22:29 [D] context:91 Load memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 16:22:29 [D] context:148 The file `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\new_cluster_id.pkl` doesn't exist. 2017-08-28 16:22:29 [D] context:134 Save data to `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\spikes_per_cluster.pkl`. 2017-08-28 16:22:29 [D] config:46 Load config file `C:\Users\peter\.phy\phy_config.py`. 2017-08-28 16:22:29 [D] __init__:40 Attached plugin ControllerSettings. 2017-08-28 16:22:29 [W] __init__:43 An error occurred when attaching plugin SpatialMap: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:22:29 [W] __init__:43 An error occurred when attaching plugin PhasePrecession: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:22:29 [W] __init__:43 An error occurred when attaching plugin PhasePrecession2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:22:29 [W] __init__:43 An error occurred when attaching plugin PosTrials: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:22:29 [W] __init__:43 An error occurred when attaching plugin PosTrials2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:22:29 [D] gui:432 Load the GUI state from `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:22:33 [D] gui:173 Load the geometry state. 2017-08-28 16:22:34 [D] gui:179 Save the geometry state. 2017-08-28 16:22:34 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:22:34 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:22:34 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:22:34 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:22:34 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:22:34 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:22:34 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:22:34 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:22:34 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 16:22:34 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 16:22:34 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 16:22:34 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 16:22:34 [D] context:102 Save memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 16:22:38 [D] model:380 Loading spike clusters. 2017-08-28 16:22:38 [D] model:395 Loading templates. 2017-08-28 16:22:38 [D] model:416 Loading the whitening matrix. 2017-08-28 16:22:38 [D] model:420 Loading the inverse of the whitening matrix. 2017-08-28 16:22:38 [D] model:101 Loading traces at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Peter_MS12_170714_122034_concat.dat`. 2017-08-28 16:22:38 [D] context:67 Initialize joblib cache dir at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy`. 2017-08-28 16:22:38 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 16:22:38 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 16:22:38 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 16:22:38 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 16:22:38 [D] context:91 Load memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 16:22:38 [D] context:148 The file `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\new_cluster_id.pkl` doesn't exist. 2017-08-28 16:22:38 [D] context:134 Save data to `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\spikes_per_cluster.pkl`. 2017-08-28 16:22:38 [D] config:46 Load config file `C:\Users\peter\.phy\phy_config.py`. 2017-08-28 16:22:38 [D] __init__:40 Attached plugin ControllerSettings. 2017-08-28 16:22:38 [W] __init__:43 An error occurred when attaching plugin SpatialMap: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:22:38 [W] __init__:43 An error occurred when attaching plugin PhasePrecession: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:22:38 [W] __init__:43 An error occurred when attaching plugin PhasePrecession2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:22:38 [W] __init__:43 An error occurred when attaching plugin PosTrials: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:22:39 [W] __init__:43 An error occurred when attaching plugin PosTrials2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:22:39 [D] gui:432 Load the GUI state from `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:22:42 [D] gui:173 Load the geometry state. 2017-08-28 16:23:53 [D] supervisor:342 Select cluster(s): 9. 2017-08-28 16:23:56 [D] supervisor:342 Select cluster(s): 6. 2017-08-28 16:24:01 [W] ControllerSettings:174 Running MahalanobisDist... 2017-08-28 16:24:01 [W] ControllerSettings:219 Calculating the Mahalanobis distance 2017-08-28 16:24:01 [W] ControllerSettings:192 1 2017-08-28 16:24:01 [W] ControllerSettings:194 TooFewRows 2017-08-28 16:24:01 [W] ControllerSettings:197 (150,) 2017-08-28 16:24:01 [W] ControllerSettings:198 2 2017-08-28 16:24:01 [W] ControllerSettings:199 () 2017-08-28 16:24:01 [E] cli:36 An error has occurred (IndexError): too many indices for array 2017-08-28 16:24:01 [D] cli:39 Traceback (most recent call last): File "C:\Users\peter\Anaconda3\envs\phy\lib\site-packages\phy\gui\actions.py", line 85, in wrapped return f() File "C:\Users\peter\Dropbox\PhyPlugins\plugins\ControllerSettings.py", line 220, in MahalanobisDist MD = MahalanobisDistCalc(x,x) File "C:\Users\peter\Dropbox\PhyPlugins\plugins\ControllerSettings.py", line 200, in MahalanobisDistCalc M = m[np.ones((ry,1), dtype=np.int),:] IndexError: too many indices for array 2017-08-28 16:24:07 [D] gui:179 Save the geometry state. 2017-08-28 16:24:07 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:24:07 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:24:07 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:24:07 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:24:07 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:24:07 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:24:07 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:24:07 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:24:07 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 16:24:07 [D] context:102 Save memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 16:24:07 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 16:24:07 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 16:24:07 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 16:25:17 [D] model:380 Loading spike clusters. 2017-08-28 16:25:17 [D] model:395 Loading templates. 2017-08-28 16:25:17 [D] model:416 Loading the whitening matrix. 2017-08-28 16:25:17 [D] model:420 Loading the inverse of the whitening matrix. 2017-08-28 16:25:17 [D] model:101 Loading traces at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Peter_MS12_170714_122034_concat.dat`. 2017-08-28 16:25:17 [D] context:67 Initialize joblib cache dir at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy`. 2017-08-28 16:25:17 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 16:25:17 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 16:25:17 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 16:25:17 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 16:25:17 [D] context:91 Load memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 16:25:17 [D] context:148 The file `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\new_cluster_id.pkl` doesn't exist. 2017-08-28 16:25:17 [D] context:134 Save data to `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\spikes_per_cluster.pkl`. 2017-08-28 16:25:17 [D] config:46 Load config file `C:\Users\peter\.phy\phy_config.py`. 2017-08-28 16:25:17 [D] __init__:40 Attached plugin ControllerSettings. 2017-08-28 16:25:17 [W] __init__:43 An error occurred when attaching plugin SpatialMap: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:25:17 [W] __init__:43 An error occurred when attaching plugin PhasePrecession: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:25:17 [W] __init__:43 An error occurred when attaching plugin PhasePrecession2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:25:17 [W] __init__:43 An error occurred when attaching plugin PosTrials: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:25:17 [W] __init__:43 An error occurred when attaching plugin PosTrials2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:25:17 [D] gui:432 Load the GUI state from `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:25:21 [D] gui:173 Load the geometry state. 2017-08-28 16:25:23 [D] supervisor:342 Select cluster(s): 6. 2017-08-28 16:25:26 [W] ControllerSettings:174 Running MahalanobisDist... 2017-08-28 16:25:26 [W] ControllerSettings:219 Calculating the Mahalanobis distance 2017-08-28 16:25:26 [W] ControllerSettings:192 1 2017-08-28 16:25:26 [W] ControllerSettings:197 (36,) 2017-08-28 16:25:26 [W] ControllerSettings:198 2 2017-08-28 16:25:26 [W] ControllerSettings:199 () 2017-08-28 16:25:26 [E] cli:36 An error has occurred (IndexError): too many indices for array 2017-08-28 16:25:26 [D] cli:39 Traceback (most recent call last): File "C:\Users\peter\Anaconda3\envs\phy\lib\site-packages\phy\gui\actions.py", line 85, in wrapped return f() File "C:\Users\peter\Dropbox\PhyPlugins\plugins\ControllerSettings.py", line 220, in MahalanobisDist MD = MahalanobisDistCalc(x,x) File "C:\Users\peter\Dropbox\PhyPlugins\plugins\ControllerSettings.py", line 200, in MahalanobisDistCalc M = m[np.ones((ry,1), dtype=np.int),:] IndexError: too many indices for array 2017-08-28 16:25:33 [D] gui:179 Save the geometry state. 2017-08-28 16:25:33 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:25:33 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:25:33 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:25:33 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:25:33 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:25:33 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:25:33 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:25:33 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:25:33 [D] context:102 Save memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 16:25:33 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 16:25:33 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 16:25:33 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 16:25:33 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 16:26:22 [D] model:380 Loading spike clusters. 2017-08-28 16:26:22 [D] model:395 Loading templates. 2017-08-28 16:26:22 [D] model:416 Loading the whitening matrix. 2017-08-28 16:26:22 [D] model:420 Loading the inverse of the whitening matrix. 2017-08-28 16:26:22 [D] model:101 Loading traces at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Peter_MS12_170714_122034_concat.dat`. 2017-08-28 16:26:22 [D] context:67 Initialize joblib cache dir at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy`. 2017-08-28 16:26:22 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 16:26:22 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 16:26:22 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 16:26:22 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 16:26:22 [D] context:91 Load memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 16:26:22 [D] context:148 The file `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\new_cluster_id.pkl` doesn't exist. 2017-08-28 16:26:22 [D] context:134 Save data to `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\spikes_per_cluster.pkl`. 2017-08-28 16:26:22 [D] config:46 Load config file `C:\Users\peter\.phy\phy_config.py`. 2017-08-28 16:26:22 [D] __init__:40 Attached plugin ControllerSettings. 2017-08-28 16:26:22 [W] __init__:43 An error occurred when attaching plugin SpatialMap: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:26:22 [W] __init__:43 An error occurred when attaching plugin PhasePrecession: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:26:22 [W] __init__:43 An error occurred when attaching plugin PhasePrecession2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:26:22 [W] __init__:43 An error occurred when attaching plugin PosTrials: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:26:22 [W] __init__:43 An error occurred when attaching plugin PosTrials2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:26:22 [D] gui:432 Load the GUI state from `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:26:25 [D] gui:173 Load the geometry state. 2017-08-28 16:26:28 [D] supervisor:342 Select cluster(s): 6. 2017-08-28 16:26:30 [W] ControllerSettings:174 Running MahalanobisDist... 2017-08-28 16:26:30 [W] ControllerSettings:219 Calculating the Mahalanobis distance 2017-08-28 16:26:30 [W] ControllerSettings:192 1 2017-08-28 16:26:30 [W] ControllerSettings:197 (36,) 2017-08-28 16:26:30 [W] ControllerSettings:198 2 2017-08-28 16:26:30 [W] ControllerSettings:199 () 2017-08-28 16:26:30 [E] cli:36 An error has occurred (IndexError): too many indices for array 2017-08-28 16:26:30 [D] cli:39 Traceback (most recent call last): File "C:\Users\peter\Anaconda3\envs\phy\lib\site-packages\phy\gui\actions.py", line 85, in wrapped return f() File "C:\Users\peter\Dropbox\PhyPlugins\plugins\ControllerSettings.py", line 220, in MahalanobisDist MD = MahalanobisDistCalc(x,x) File "C:\Users\peter\Dropbox\PhyPlugins\plugins\ControllerSettings.py", line 200, in MahalanobisDistCalc M = m[np.zeros((ry,1), dtype=np.int),:] IndexError: too many indices for array 2017-08-28 16:26:35 [D] gui:179 Save the geometry state. 2017-08-28 16:26:35 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:26:35 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:26:35 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:26:35 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:26:35 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:26:35 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:26:35 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:26:35 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:26:35 [D] context:102 Save memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 16:26:35 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 16:26:35 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 16:26:35 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 16:26:35 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 16:27:51 [D] model:380 Loading spike clusters. 2017-08-28 16:27:51 [D] model:395 Loading templates. 2017-08-28 16:27:51 [D] model:416 Loading the whitening matrix. 2017-08-28 16:27:51 [D] model:420 Loading the inverse of the whitening matrix. 2017-08-28 16:27:51 [D] model:101 Loading traces at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Peter_MS12_170714_122034_concat.dat`. 2017-08-28 16:27:51 [D] context:67 Initialize joblib cache dir at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy`. 2017-08-28 16:27:51 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 16:27:51 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 16:27:51 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 16:27:51 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 16:27:51 [D] context:91 Load memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 16:27:51 [D] context:148 The file `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\new_cluster_id.pkl` doesn't exist. 2017-08-28 16:27:51 [D] context:134 Save data to `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\spikes_per_cluster.pkl`. 2017-08-28 16:27:51 [D] config:46 Load config file `C:\Users\peter\.phy\phy_config.py`. 2017-08-28 16:27:51 [D] __init__:40 Attached plugin ControllerSettings. 2017-08-28 16:27:51 [W] __init__:43 An error occurred when attaching plugin SpatialMap: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:27:51 [W] __init__:43 An error occurred when attaching plugin PhasePrecession: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:27:51 [W] __init__:43 An error occurred when attaching plugin PhasePrecession2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:27:51 [W] __init__:43 An error occurred when attaching plugin PosTrials: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:27:51 [W] __init__:43 An error occurred when attaching plugin PosTrials2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:27:51 [D] gui:432 Load the GUI state from `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:27:55 [D] gui:173 Load the geometry state. 2017-08-28 16:27:57 [D] supervisor:342 Select cluster(s): 6. 2017-08-28 16:27:59 [W] ControllerSettings:174 Running MahalanobisDist... 2017-08-28 16:27:59 [W] ControllerSettings:219 Calculating the Mahalanobis distance 2017-08-28 16:27:59 [W] ControllerSettings:192 1 2017-08-28 16:27:59 [W] ControllerSettings:197 (36,) 2017-08-28 16:27:59 [W] ControllerSettings:198 2 2017-08-28 16:27:59 [W] ControllerSettings:199 (150, 36) 2017-08-28 16:27:59 [E] cli:36 An error has occurred (IndexError): too many indices for array 2017-08-28 16:27:59 [D] cli:39 Traceback (most recent call last): File "C:\Users\peter\Anaconda3\envs\phy\lib\site-packages\phy\gui\actions.py", line 85, in wrapped return f() File "C:\Users\peter\Dropbox\PhyPlugins\plugins\ControllerSettings.py", line 220, in MahalanobisDist MD = MahalanobisDistCalc(x,x) File "C:\Users\peter\Dropbox\PhyPlugins\plugins\ControllerSettings.py", line 200, in MahalanobisDistCalc M = m[np.zeros((ry,1), dtype=np.int),:] IndexError: too many indices for array 2017-08-28 16:28:04 [D] gui:179 Save the geometry state. 2017-08-28 16:28:04 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:28:04 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:28:04 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:28:04 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:28:04 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:28:04 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:28:04 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:28:04 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:28:04 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 16:28:04 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 16:28:04 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 16:28:04 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 16:28:04 [D] context:102 Save memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 16:29:49 [D] model:380 Loading spike clusters. 2017-08-28 16:29:49 [D] model:395 Loading templates. 2017-08-28 16:29:49 [D] model:416 Loading the whitening matrix. 2017-08-28 16:29:49 [D] model:420 Loading the inverse of the whitening matrix. 2017-08-28 16:29:49 [D] model:101 Loading traces at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Peter_MS12_170714_122034_concat.dat`. 2017-08-28 16:29:49 [D] context:67 Initialize joblib cache dir at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy`. 2017-08-28 16:29:49 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 16:29:49 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 16:29:49 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 16:29:49 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 16:29:49 [D] context:91 Load memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 16:29:49 [D] context:148 The file `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\new_cluster_id.pkl` doesn't exist. 2017-08-28 16:29:49 [D] context:134 Save data to `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\spikes_per_cluster.pkl`. 2017-08-28 16:29:49 [D] config:46 Load config file `C:\Users\peter\.phy\phy_config.py`. 2017-08-28 16:29:49 [D] __init__:40 Attached plugin ControllerSettings. 2017-08-28 16:29:49 [W] __init__:43 An error occurred when attaching plugin SpatialMap: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:29:50 [W] __init__:43 An error occurred when attaching plugin PhasePrecession: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:29:50 [W] __init__:43 An error occurred when attaching plugin PhasePrecession2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:29:50 [W] __init__:43 An error occurred when attaching plugin PosTrials: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:29:50 [W] __init__:43 An error occurred when attaching plugin PosTrials2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:29:50 [D] gui:432 Load the GUI state from `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:29:53 [D] gui:173 Load the geometry state. 2017-08-28 16:29:57 [D] supervisor:342 Select cluster(s): 6. 2017-08-28 16:30:00 [W] ControllerSettings:174 Running MahalanobisDist... 2017-08-28 16:30:00 [W] ControllerSettings:219 Calculating the Mahalanobis distance 2017-08-28 16:30:00 [W] ControllerSettings:192 1 2017-08-28 16:30:00 [W] ControllerSettings:194 TooFewRows 2017-08-28 16:30:00 [W] ControllerSettings:197 (150,) 2017-08-28 16:30:00 [W] ControllerSettings:198 2 2017-08-28 16:30:00 [W] ControllerSettings:199 (36, 150) 2017-08-28 16:30:00 [E] cli:36 An error has occurred (IndexError): too many indices for array 2017-08-28 16:30:00 [D] cli:39 Traceback (most recent call last): File "C:\Users\peter\Anaconda3\envs\phy\lib\site-packages\phy\gui\actions.py", line 85, in wrapped return f() File "C:\Users\peter\Dropbox\PhyPlugins\plugins\ControllerSettings.py", line 220, in MahalanobisDist MD = MahalanobisDistCalc(x,x) File "C:\Users\peter\Dropbox\PhyPlugins\plugins\ControllerSettings.py", line 200, in MahalanobisDistCalc M = m[np.zeros((ry,1), dtype=np.int),:] IndexError: too many indices for array 2017-08-28 16:30:04 [D] gui:179 Save the geometry state. 2017-08-28 16:30:04 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:30:04 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:30:04 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:30:04 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:30:04 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:30:04 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:30:04 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:30:04 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:30:04 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 16:30:04 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 16:30:04 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 16:30:04 [D] context:102 Save memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 16:30:04 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 16:30:58 [D] model:380 Loading spike clusters. 2017-08-28 16:30:58 [D] model:395 Loading templates. 2017-08-28 16:30:58 [D] model:416 Loading the whitening matrix. 2017-08-28 16:30:58 [D] model:420 Loading the inverse of the whitening matrix. 2017-08-28 16:30:58 [D] model:101 Loading traces at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Peter_MS12_170714_122034_concat.dat`. 2017-08-28 16:30:58 [D] context:67 Initialize joblib cache dir at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy`. 2017-08-28 16:30:58 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 16:30:58 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 16:30:58 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 16:30:58 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 16:30:58 [D] context:91 Load memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 16:30:58 [D] context:148 The file `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\new_cluster_id.pkl` doesn't exist. 2017-08-28 16:30:59 [D] context:134 Save data to `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\spikes_per_cluster.pkl`. 2017-08-28 16:30:59 [D] config:46 Load config file `C:\Users\peter\.phy\phy_config.py`. 2017-08-28 16:30:59 [D] __init__:40 Attached plugin ControllerSettings. 2017-08-28 16:30:59 [W] __init__:43 An error occurred when attaching plugin SpatialMap: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:30:59 [W] __init__:43 An error occurred when attaching plugin PhasePrecession: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:30:59 [W] __init__:43 An error occurred when attaching plugin PhasePrecession2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:30:59 [W] __init__:43 An error occurred when attaching plugin PosTrials: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:30:59 [W] __init__:43 An error occurred when attaching plugin PosTrials2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:30:59 [D] gui:432 Load the GUI state from `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:31:02 [D] gui:173 Load the geometry state. 2017-08-28 16:31:04 [D] supervisor:342 Select cluster(s): 6. 2017-08-28 16:31:06 [W] ControllerSettings:174 Running MahalanobisDist... 2017-08-28 16:31:06 [W] ControllerSettings:219 Calculating the Mahalanobis distance 2017-08-28 16:31:06 [W] ControllerSettings:192 1 2017-08-28 16:31:06 [W] ControllerSettings:194 TooFewRows 2017-08-28 16:31:06 [W] ControllerSettings:197 (150,) 2017-08-28 16:31:06 [W] ControllerSettings:198 2 2017-08-28 16:31:06 [W] ControllerSettings:199 (36, 150) 2017-08-28 16:31:06 [E] cli:36 An error has occurred (IndexError): too many indices for array 2017-08-28 16:31:06 [D] cli:39 Traceback (most recent call last): File "C:\Users\peter\Anaconda3\envs\phy\lib\site-packages\phy\gui\actions.py", line 85, in wrapped return f() File "C:\Users\peter\Dropbox\PhyPlugins\plugins\ControllerSettings.py", line 220, in MahalanobisDist MD = MahalanobisDistCalc(x,x) File "C:\Users\peter\Dropbox\PhyPlugins\plugins\ControllerSettings.py", line 200, in MahalanobisDistCalc M = m[np.zeros((ry), dtype=np.int),:] IndexError: too many indices for array 2017-08-28 16:31:08 [D] gui:179 Save the geometry state. 2017-08-28 16:31:08 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:31:08 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:31:08 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:31:08 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:31:08 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:31:08 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:31:08 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:31:08 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:31:08 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 16:31:08 [D] context:102 Save memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 16:31:08 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 16:31:08 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 16:31:08 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 16:33:03 [D] model:380 Loading spike clusters. 2017-08-28 16:33:03 [D] model:395 Loading templates. 2017-08-28 16:33:03 [D] model:416 Loading the whitening matrix. 2017-08-28 16:33:03 [D] model:420 Loading the inverse of the whitening matrix. 2017-08-28 16:33:03 [D] model:101 Loading traces at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Peter_MS12_170714_122034_concat.dat`. 2017-08-28 16:33:03 [D] context:67 Initialize joblib cache dir at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy`. 2017-08-28 16:33:03 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 16:33:03 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 16:33:03 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 16:33:03 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 16:33:03 [D] context:91 Load memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 16:33:03 [D] context:148 The file `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\new_cluster_id.pkl` doesn't exist. 2017-08-28 16:33:03 [D] context:134 Save data to `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\spikes_per_cluster.pkl`. 2017-08-28 16:33:03 [D] config:46 Load config file `C:\Users\peter\.phy\phy_config.py`. 2017-08-28 16:33:03 [D] __init__:40 Attached plugin ControllerSettings. 2017-08-28 16:33:03 [W] __init__:43 An error occurred when attaching plugin SpatialMap: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:33:03 [W] __init__:43 An error occurred when attaching plugin PhasePrecession: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:33:03 [W] __init__:43 An error occurred when attaching plugin PhasePrecession2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:33:03 [W] __init__:43 An error occurred when attaching plugin PosTrials: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:33:04 [W] __init__:43 An error occurred when attaching plugin PosTrials2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:33:04 [D] gui:432 Load the GUI state from `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:33:07 [D] gui:173 Load the geometry state. 2017-08-28 16:33:09 [D] supervisor:342 Select cluster(s): 6. 2017-08-28 16:33:12 [W] ControllerSettings:174 Running MahalanobisDist... 2017-08-28 16:33:12 [W] ControllerSettings:219 Calculating the Mahalanobis distance 2017-08-28 16:33:12 [W] ControllerSettings:192 1 2017-08-28 16:33:12 [W] ControllerSettings:197 (36,) 2017-08-28 16:33:12 [W] ControllerSettings:198 2 2017-08-28 16:33:12 [W] ControllerSettings:199 (150, 36) 2017-08-28 16:33:12 [E] cli:36 An error has occurred (IndexError): too many indices for array 2017-08-28 16:33:12 [D] cli:39 Traceback (most recent call last): File "C:\Users\peter\Anaconda3\envs\phy\lib\site-packages\phy\gui\actions.py", line 85, in wrapped return f() File "C:\Users\peter\Dropbox\PhyPlugins\plugins\ControllerSettings.py", line 220, in MahalanobisDist MD = MahalanobisDistCalc(x,x) File "C:\Users\peter\Dropbox\PhyPlugins\plugins\ControllerSettings.py", line 200, in MahalanobisDistCalc M = m[np.zeros((ry,1), dtype=np.int),:] IndexError: too many indices for array 2017-08-28 16:33:20 [D] gui:179 Save the geometry state. 2017-08-28 16:33:20 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:33:20 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:33:20 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:33:20 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:33:20 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:33:20 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:33:20 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:33:20 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:33:20 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 16:33:20 [D] context:102 Save memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 16:33:20 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 16:33:20 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 16:33:20 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 16:34:25 [D] model:380 Loading spike clusters. 2017-08-28 16:34:25 [D] model:395 Loading templates. 2017-08-28 16:34:25 [D] model:416 Loading the whitening matrix. 2017-08-28 16:34:25 [D] model:420 Loading the inverse of the whitening matrix. 2017-08-28 16:34:25 [D] model:101 Loading traces at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Peter_MS12_170714_122034_concat.dat`. 2017-08-28 16:34:25 [D] context:67 Initialize joblib cache dir at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy`. 2017-08-28 16:34:25 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 16:34:25 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 16:34:25 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 16:34:25 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 16:34:25 [D] context:91 Load memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 16:34:25 [D] context:148 The file `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\new_cluster_id.pkl` doesn't exist. 2017-08-28 16:34:25 [D] context:134 Save data to `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\spikes_per_cluster.pkl`. 2017-08-28 16:34:25 [D] config:46 Load config file `C:\Users\peter\.phy\phy_config.py`. 2017-08-28 16:34:25 [D] __init__:40 Attached plugin ControllerSettings. 2017-08-28 16:34:25 [W] __init__:43 An error occurred when attaching plugin SpatialMap: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:34:25 [W] __init__:43 An error occurred when attaching plugin PhasePrecession: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:34:25 [W] __init__:43 An error occurred when attaching plugin PhasePrecession2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:34:25 [W] __init__:43 An error occurred when attaching plugin PosTrials: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:34:26 [W] __init__:43 An error occurred when attaching plugin PosTrials2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:34:26 [D] gui:432 Load the GUI state from `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:34:29 [D] gui:173 Load the geometry state. 2017-08-28 16:34:30 [D] supervisor:342 Select cluster(s): 6. 2017-08-28 16:34:33 [W] ControllerSettings:174 Running MahalanobisDist... 2017-08-28 16:34:33 [W] ControllerSettings:220 Calculating the Mahalanobis distance 2017-08-28 16:34:33 [W] ControllerSettings:192 1 2017-08-28 16:34:33 [W] ControllerSettings:197 (36,) 2017-08-28 16:34:33 [W] ControllerSettings:198 2 2017-08-28 16:34:33 [W] ControllerSettings:199 150 2017-08-28 16:34:33 [W] ControllerSettings:200 (150, 1) 2017-08-28 16:34:33 [E] cli:36 An error has occurred (IndexError): too many indices for array 2017-08-28 16:34:33 [D] cli:39 Traceback (most recent call last): File "C:\Users\peter\Anaconda3\envs\phy\lib\site-packages\phy\gui\actions.py", line 85, in wrapped return f() File "C:\Users\peter\Dropbox\PhyPlugins\plugins\ControllerSettings.py", line 221, in MahalanobisDist MD = MahalanobisDistCalc(x,x) File "C:\Users\peter\Dropbox\PhyPlugins\plugins\ControllerSettings.py", line 201, in MahalanobisDistCalc M = m[np.zeros((ry,1), dtype=np.int),:] IndexError: too many indices for array 2017-08-28 16:34:37 [D] gui:179 Save the geometry state. 2017-08-28 16:34:37 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:34:37 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:34:37 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:34:37 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:34:37 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:34:37 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:34:37 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:34:37 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:34:37 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 16:34:37 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 16:34:37 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 16:34:37 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 16:34:37 [D] context:102 Save memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 16:35:02 [D] model:380 Loading spike clusters. 2017-08-28 16:35:02 [D] model:395 Loading templates. 2017-08-28 16:35:02 [D] model:416 Loading the whitening matrix. 2017-08-28 16:35:02 [D] model:420 Loading the inverse of the whitening matrix. 2017-08-28 16:35:02 [D] model:101 Loading traces at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Peter_MS12_170714_122034_concat.dat`. 2017-08-28 16:35:02 [D] context:67 Initialize joblib cache dir at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy`. 2017-08-28 16:35:02 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 16:35:02 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 16:35:02 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 16:35:02 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 16:35:02 [D] context:91 Load memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 16:35:02 [D] context:148 The file `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\new_cluster_id.pkl` doesn't exist. 2017-08-28 16:35:02 [D] context:134 Save data to `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\spikes_per_cluster.pkl`. 2017-08-28 16:35:03 [D] config:46 Load config file `C:\Users\peter\.phy\phy_config.py`. 2017-08-28 16:35:03 [D] __init__:40 Attached plugin ControllerSettings. 2017-08-28 16:35:03 [W] __init__:43 An error occurred when attaching plugin SpatialMap: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:35:03 [W] __init__:43 An error occurred when attaching plugin PhasePrecession: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:35:03 [W] __init__:43 An error occurred when attaching plugin PhasePrecession2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:35:03 [W] __init__:43 An error occurred when attaching plugin PosTrials: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:35:03 [W] __init__:43 An error occurred when attaching plugin PosTrials2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:35:03 [D] gui:432 Load the GUI state from `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:35:06 [D] gui:173 Load the geometry state. 2017-08-28 16:37:08 [D] gui:179 Save the geometry state. 2017-08-28 16:37:08 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:37:08 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:37:08 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:37:08 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:37:08 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:37:08 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:37:08 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:37:08 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:37:08 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 16:37:09 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 16:37:09 [D] context:102 Save memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 16:37:09 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 16:37:09 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 16:41:24 [D] model:380 Loading spike clusters. 2017-08-28 16:41:24 [D] model:395 Loading templates. 2017-08-28 16:41:24 [D] model:416 Loading the whitening matrix. 2017-08-28 16:41:24 [D] model:420 Loading the inverse of the whitening matrix. 2017-08-28 16:41:24 [D] model:101 Loading traces at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Peter_MS12_170714_122034_concat.dat`. 2017-08-28 16:41:24 [D] context:67 Initialize joblib cache dir at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy`. 2017-08-28 16:41:24 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 16:41:24 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 16:41:24 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 16:41:24 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 16:41:24 [D] context:91 Load memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 16:41:24 [D] context:148 The file `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\new_cluster_id.pkl` doesn't exist. 2017-08-28 16:41:24 [D] context:134 Save data to `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\spikes_per_cluster.pkl`. 2017-08-28 16:41:25 [D] config:46 Load config file `C:\Users\peter\.phy\phy_config.py`. 2017-08-28 16:41:25 [D] __init__:40 Attached plugin ControllerSettings. 2017-08-28 16:41:25 [W] __init__:43 An error occurred when attaching plugin SpatialMap: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:41:25 [W] __init__:43 An error occurred when attaching plugin PhasePrecession: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:41:25 [W] __init__:43 An error occurred when attaching plugin PhasePrecession2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:41:25 [W] __init__:43 An error occurred when attaching plugin PosTrials: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:41:25 [W] __init__:43 An error occurred when attaching plugin PosTrials2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:41:25 [D] gui:432 Load the GUI state from `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:41:28 [D] gui:173 Load the geometry state. 2017-08-28 16:41:30 [D] supervisor:342 Select cluster(s): 6. 2017-08-28 16:41:31 [W] ControllerSettings:174 Running MahalanobisDist... 2017-08-28 16:41:31 [W] ControllerSettings:222 Calculating the Mahalanobis distance 2017-08-28 16:41:31 [W] ControllerSettings:192 1 2017-08-28 16:41:31 [W] ControllerSettings:197 (36,) 2017-08-28 16:41:31 [W] ControllerSettings:198 2 2017-08-28 16:41:31 [W] ControllerSettings:199 150 2017-08-28 16:41:31 [W] ControllerSettings:200 (150, 1) 2017-08-28 16:41:31 [W] ControllerSettings:203 3 2017-08-28 16:41:31 [W] ControllerSettings:206 4 2017-08-28 16:41:31 [E] cli:36 An error has occurred (ValueError): Unrecognized mode '0' 2017-08-28 16:41:31 [D] cli:39 Traceback (most recent call last): File "C:\Users\peter\Anaconda3\envs\phy\lib\site-packages\phy\gui\actions.py", line 85, in wrapped return f() File "C:\Users\peter\Dropbox\PhyPlugins\plugins\ControllerSettings.py", line 223, in MahalanobisDist MD = MahalanobisDistCalc(x,x) File "C:\Users\peter\Dropbox\PhyPlugins\plugins\ControllerSettings.py", line 207, in MahalanobisDistCalc Q,R = np.linalg.qr(C,0) File "C:\Users\peter\Anaconda3\envs\phy\lib\site-packages\numpy\linalg\linalg.py", line 748, in qr raise ValueError("Unrecognized mode '%s'" % mode) ValueError: Unrecognized mode '0' 2017-08-28 16:41:39 [D] gui:179 Save the geometry state. 2017-08-28 16:41:39 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:41:39 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:41:39 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:41:39 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:41:39 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:41:39 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:41:39 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:41:39 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:41:39 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 16:41:39 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 16:41:39 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 16:41:39 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 16:41:39 [D] context:102 Save memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 16:43:31 [D] model:380 Loading spike clusters. 2017-08-28 16:43:31 [D] model:395 Loading templates. 2017-08-28 16:43:31 [D] model:416 Loading the whitening matrix. 2017-08-28 16:43:31 [D] model:420 Loading the inverse of the whitening matrix. 2017-08-28 16:43:31 [D] model:101 Loading traces at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Peter_MS12_170714_122034_concat.dat`. 2017-08-28 16:43:31 [D] context:67 Initialize joblib cache dir at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy`. 2017-08-28 16:43:31 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 16:43:31 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 16:43:31 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 16:43:31 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 16:43:31 [D] context:91 Load memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 16:43:31 [D] context:148 The file `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\new_cluster_id.pkl` doesn't exist. 2017-08-28 16:43:31 [D] context:134 Save data to `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\spikes_per_cluster.pkl`. 2017-08-28 16:43:31 [D] config:46 Load config file `C:\Users\peter\.phy\phy_config.py`. 2017-08-28 16:43:31 [D] __init__:40 Attached plugin ControllerSettings. 2017-08-28 16:43:31 [W] __init__:43 An error occurred when attaching plugin SpatialMap: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:43:31 [W] __init__:43 An error occurred when attaching plugin PhasePrecession: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:43:31 [W] __init__:43 An error occurred when attaching plugin PhasePrecession2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:43:31 [W] __init__:43 An error occurred when attaching plugin PosTrials: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:43:31 [W] __init__:43 An error occurred when attaching plugin PosTrials2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:43:31 [D] gui:432 Load the GUI state from `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:43:34 [D] gui:173 Load the geometry state. 2017-08-28 16:43:36 [D] supervisor:342 Select cluster(s): 6. 2017-08-28 16:43:38 [W] ControllerSettings:174 Running MahalanobisDist... 2017-08-28 16:43:38 [W] ControllerSettings:222 Calculating the Mahalanobis distance 2017-08-28 16:43:38 [W] ControllerSettings:192 1 2017-08-28 16:43:38 [W] ControllerSettings:197 (36,) 2017-08-28 16:43:38 [W] ControllerSettings:198 2 2017-08-28 16:43:38 [W] ControllerSettings:199 150 2017-08-28 16:43:38 [W] ControllerSettings:200 (150, 1) 2017-08-28 16:43:38 [W] ControllerSettings:203 3 2017-08-28 16:43:38 [W] ControllerSettings:206 4 2017-08-28 16:43:39 [E] cli:36 An error has occurred (ValueError): too many values to unpack (expected 2) 2017-08-28 16:43:39 [D] cli:39 Traceback (most recent call last): File "C:\Users\peter\Anaconda3\envs\phy\lib\site-packages\phy\gui\actions.py", line 85, in wrapped return f() File "C:\Users\peter\Dropbox\PhyPlugins\plugins\ControllerSettings.py", line 223, in MahalanobisDist MD = MahalanobisDistCalc(x,x) File "C:\Users\peter\Dropbox\PhyPlugins\plugins\ControllerSettings.py", line 207, in MahalanobisDistCalc Q,R = np.linalg.qr(C,mode='economic') ValueError: too many values to unpack (expected 2) 2017-08-28 16:43:44 [D] gui:179 Save the geometry state. 2017-08-28 16:43:44 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:43:44 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:43:44 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:43:44 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:43:44 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:43:44 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:43:44 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:43:44 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:43:44 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 16:43:44 [D] context:102 Save memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 16:43:44 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 16:43:44 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 16:43:44 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 16:46:07 [D] model:380 Loading spike clusters. 2017-08-28 16:46:07 [D] model:395 Loading templates. 2017-08-28 16:46:07 [D] model:416 Loading the whitening matrix. 2017-08-28 16:46:07 [D] model:420 Loading the inverse of the whitening matrix. 2017-08-28 16:46:07 [D] model:101 Loading traces at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Peter_MS12_170714_122034_concat.dat`. 2017-08-28 16:46:07 [D] context:67 Initialize joblib cache dir at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy`. 2017-08-28 16:46:07 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 16:46:07 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 16:46:07 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 16:46:07 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 16:46:07 [D] context:91 Load memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 16:46:07 [D] context:148 The file `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\new_cluster_id.pkl` doesn't exist. 2017-08-28 16:46:07 [D] context:134 Save data to `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\spikes_per_cluster.pkl`. 2017-08-28 16:46:08 [D] config:46 Load config file `C:\Users\peter\.phy\phy_config.py`. 2017-08-28 16:46:08 [D] __init__:40 Attached plugin ControllerSettings. 2017-08-28 16:46:08 [W] __init__:43 An error occurred when attaching plugin SpatialMap: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:46:08 [W] __init__:43 An error occurred when attaching plugin PhasePrecession: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:46:08 [W] __init__:43 An error occurred when attaching plugin PhasePrecession2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:46:08 [W] __init__:43 An error occurred when attaching plugin PosTrials: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:46:08 [W] __init__:43 An error occurred when attaching plugin PosTrials2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:46:08 [D] gui:432 Load the GUI state from `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:46:11 [D] gui:173 Load the geometry state. 2017-08-28 16:46:14 [D] supervisor:342 Select cluster(s): 6. 2017-08-28 16:46:16 [W] ControllerSettings:174 Running MahalanobisDist... 2017-08-28 16:46:16 [W] ControllerSettings:222 Calculating the Mahalanobis distance 2017-08-28 16:46:16 [W] ControllerSettings:192 1 2017-08-28 16:46:16 [W] ControllerSettings:197 (36,) 2017-08-28 16:46:16 [W] ControllerSettings:198 2 2017-08-28 16:46:16 [W] ControllerSettings:199 150 2017-08-28 16:46:16 [W] ControllerSettings:200 (150, 1) 2017-08-28 16:46:16 [W] ControllerSettings:203 3 2017-08-28 16:46:16 [W] ControllerSettings:206 4 2017-08-28 16:46:16 [W] ControllerSettings:208 5 2017-08-28 16:46:16 [W] ControllerSettings:210 6 2017-08-28 16:46:16 [E] cli:36 An error has occurred (TypeError): can't multiply sequence by non-int of type 'tuple' 2017-08-28 16:46:16 [D] cli:39 Traceback (most recent call last): File "C:\Users\peter\Anaconda3\envs\phy\lib\site-packages\phy\gui\actions.py", line 85, in wrapped return f() File "C:\Users\peter\Dropbox\PhyPlugins\plugins\ControllerSettings.py", line 223, in MahalanobisDist MD = MahalanobisDistCalc(x,x) File "C:\Users\peter\Dropbox\PhyPlugins\plugins\ControllerSettings.py", line 211, in MahalanobisDistCalc d = np.transpose(np.sum(ri*ri, axis=0))*(rx-1) TypeError: can't multiply sequence by non-int of type 'tuple' 2017-08-28 16:46:21 [D] gui:179 Save the geometry state. 2017-08-28 16:46:21 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:46:21 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:46:21 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:46:21 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:46:21 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:46:21 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:46:21 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:46:21 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:46:21 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 16:46:21 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 16:46:21 [D] context:102 Save memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 16:46:21 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 16:46:21 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 16:48:37 [D] model:380 Loading spike clusters. 2017-08-28 16:48:37 [D] model:395 Loading templates. 2017-08-28 16:48:37 [D] model:416 Loading the whitening matrix. 2017-08-28 16:48:37 [D] model:420 Loading the inverse of the whitening matrix. 2017-08-28 16:48:37 [D] model:101 Loading traces at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Peter_MS12_170714_122034_concat.dat`. 2017-08-28 16:48:37 [D] context:67 Initialize joblib cache dir at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy`. 2017-08-28 16:48:37 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 16:48:37 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 16:48:37 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 16:48:37 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 16:48:37 [D] context:91 Load memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 16:48:37 [D] context:148 The file `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\new_cluster_id.pkl` doesn't exist. 2017-08-28 16:48:38 [D] context:134 Save data to `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\spikes_per_cluster.pkl`. 2017-08-28 16:48:38 [D] config:46 Load config file `C:\Users\peter\.phy\phy_config.py`. 2017-08-28 16:48:38 [D] __init__:40 Attached plugin ControllerSettings. 2017-08-28 16:48:38 [W] __init__:43 An error occurred when attaching plugin SpatialMap: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:48:38 [W] __init__:43 An error occurred when attaching plugin PhasePrecession: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:48:38 [W] __init__:43 An error occurred when attaching plugin PhasePrecession2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:48:38 [W] __init__:43 An error occurred when attaching plugin PosTrials: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:48:38 [W] __init__:43 An error occurred when attaching plugin PosTrials2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:48:38 [D] gui:432 Load the GUI state from `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:48:41 [D] gui:173 Load the geometry state. 2017-08-28 16:48:43 [D] supervisor:342 Select cluster(s): 7. 2017-08-28 16:48:45 [D] supervisor:342 Select cluster(s): 6. 2017-08-28 16:48:46 [D] supervisor:342 Select cluster(s): 6. 2017-08-28 16:48:48 [W] ControllerSettings:174 Running MahalanobisDist... 2017-08-28 16:48:48 [W] ControllerSettings:224 Calculating the Mahalanobis distance 2017-08-28 16:48:48 [W] ControllerSettings:192 1 2017-08-28 16:48:48 [W] ControllerSettings:197 (36,) 2017-08-28 16:48:48 [W] ControllerSettings:198 2 2017-08-28 16:48:48 [W] ControllerSettings:200 3 2017-08-28 16:48:48 [W] ControllerSettings:202 4 2017-08-28 16:48:48 [W] ControllerSettings:204 (150, 36) 2017-08-28 16:48:48 [W] ControllerSettings:205 (36, 36) 2017-08-28 16:48:48 [W] ControllerSettings:208 5 2017-08-28 16:48:48 [W] ControllerSettings:210 6 2017-08-28 16:48:48 [W] ControllerSettings:211 (4,) 2017-08-28 16:48:48 [W] ControllerSettings:212 () 2017-08-28 16:48:48 [E] cli:36 An error has occurred (TypeError): can't multiply sequence by non-int of type 'tuple' 2017-08-28 16:48:48 [D] cli:39 Traceback (most recent call last): File "C:\Users\peter\Anaconda3\envs\phy\lib\site-packages\phy\gui\actions.py", line 85, in wrapped return f() File "C:\Users\peter\Dropbox\PhyPlugins\plugins\ControllerSettings.py", line 225, in MahalanobisDist MD = MahalanobisDistCalc(x,x) File "C:\Users\peter\Dropbox\PhyPlugins\plugins\ControllerSettings.py", line 213, in MahalanobisDistCalc d = np.transpose(np.sum(ri*ri, axis=0)).dot(rx-1) TypeError: can't multiply sequence by non-int of type 'tuple' 2017-08-28 16:48:53 [D] gui:179 Save the geometry state. 2017-08-28 16:48:53 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:48:53 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:48:53 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:48:53 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:48:53 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:48:53 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:48:53 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:48:53 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:48:53 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 16:48:53 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 16:48:53 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 16:48:53 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 16:48:53 [D] context:102 Save memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 16:52:45 [D] model:380 Loading spike clusters. 2017-08-28 16:52:45 [D] model:395 Loading templates. 2017-08-28 16:52:45 [D] model:416 Loading the whitening matrix. 2017-08-28 16:52:45 [D] model:420 Loading the inverse of the whitening matrix. 2017-08-28 16:52:45 [D] model:101 Loading traces at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Peter_MS12_170714_122034_concat.dat`. 2017-08-28 16:52:45 [D] context:67 Initialize joblib cache dir at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy`. 2017-08-28 16:52:45 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 16:52:45 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 16:52:45 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 16:52:45 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 16:52:45 [D] context:91 Load memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 16:52:45 [D] context:148 The file `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\new_cluster_id.pkl` doesn't exist. 2017-08-28 16:52:45 [D] context:134 Save data to `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\spikes_per_cluster.pkl`. 2017-08-28 16:52:45 [D] config:46 Load config file `C:\Users\peter\.phy\phy_config.py`. 2017-08-28 16:52:45 [D] __init__:40 Attached plugin ControllerSettings. 2017-08-28 16:52:46 [W] __init__:43 An error occurred when attaching plugin SpatialMap: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:52:46 [W] __init__:43 An error occurred when attaching plugin PhasePrecession: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:52:46 [W] __init__:43 An error occurred when attaching plugin PhasePrecession2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:52:46 [W] __init__:43 An error occurred when attaching plugin PosTrials: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:52:46 [W] __init__:43 An error occurred when attaching plugin PosTrials2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:52:46 [D] gui:432 Load the GUI state from `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:52:49 [D] gui:173 Load the geometry state. 2017-08-28 16:52:50 [D] supervisor:342 Select cluster(s): 6. 2017-08-28 16:52:52 [W] ControllerSettings:174 Running MahalanobisDist... 2017-08-28 16:52:52 [W] ControllerSettings:223 Calculating the Mahalanobis distance 2017-08-28 16:52:52 [W] ControllerSettings:192 1 2017-08-28 16:52:52 [W] ControllerSettings:197 2 2017-08-28 16:52:52 [W] ControllerSettings:199 3 2017-08-28 16:52:52 [W] ControllerSettings:201 4 2017-08-28 16:52:52 [W] ControllerSettings:203 (150, 36) 2017-08-28 16:52:52 [W] ControllerSettings:204 (36, 36) 2017-08-28 16:52:52 [W] ControllerSettings:205 5 2017-08-28 16:52:52 [W] ControllerSettings:207 6 2017-08-28 16:52:52 [W] ControllerSettings:208 2017-08-28 16:52:52 [W] ControllerSettings:209 2017-08-28 16:52:52 [W] ControllerSettings:210 (4,) 2017-08-28 16:52:52 [W] ControllerSettings:211 () 2017-08-28 16:52:52 [E] cli:36 An error has occurred (TypeError): can't multiply sequence by non-int of type 'tuple' 2017-08-28 16:52:52 [D] cli:39 Traceback (most recent call last): File "C:\Users\peter\Anaconda3\envs\phy\lib\site-packages\phy\gui\actions.py", line 85, in wrapped return f() File "C:\Users\peter\Dropbox\PhyPlugins\plugins\ControllerSettings.py", line 224, in MahalanobisDist MD = MahalanobisDistCalc(x,x) File "C:\Users\peter\Dropbox\PhyPlugins\plugins\ControllerSettings.py", line 212, in MahalanobisDistCalc d = np.transpose(np.sum(ri*ri, axis=0)).dot(rx-1) TypeError: can't multiply sequence by non-int of type 'tuple' 2017-08-28 16:52:58 [D] gui:179 Save the geometry state. 2017-08-28 16:52:58 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:52:58 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:52:58 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:52:58 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:52:58 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:52:58 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:52:58 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:52:58 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:52:58 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 16:52:58 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 16:52:58 [D] context:102 Save memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 16:52:58 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 16:52:58 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 16:53:35 [D] model:380 Loading spike clusters. 2017-08-28 16:53:35 [D] model:395 Loading templates. 2017-08-28 16:53:35 [D] model:416 Loading the whitening matrix. 2017-08-28 16:53:35 [D] model:420 Loading the inverse of the whitening matrix. 2017-08-28 16:53:35 [D] model:101 Loading traces at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Peter_MS12_170714_122034_concat.dat`. 2017-08-28 16:53:35 [D] context:67 Initialize joblib cache dir at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy`. 2017-08-28 16:53:35 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 16:53:35 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 16:53:35 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 16:53:35 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 16:53:35 [D] context:91 Load memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 16:53:35 [D] context:148 The file `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\new_cluster_id.pkl` doesn't exist. 2017-08-28 16:53:36 [D] context:134 Save data to `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\spikes_per_cluster.pkl`. 2017-08-28 16:53:36 [D] config:46 Load config file `C:\Users\peter\.phy\phy_config.py`. 2017-08-28 16:53:36 [D] __init__:40 Attached plugin ControllerSettings. 2017-08-28 16:53:36 [W] __init__:43 An error occurred when attaching plugin SpatialMap: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:53:36 [W] __init__:43 An error occurred when attaching plugin PhasePrecession: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:53:36 [W] __init__:43 An error occurred when attaching plugin PhasePrecession2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:53:36 [W] __init__:43 An error occurred when attaching plugin PosTrials: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:53:36 [W] __init__:43 An error occurred when attaching plugin PosTrials2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:53:36 [D] gui:432 Load the GUI state from `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:53:39 [D] gui:173 Load the geometry state. 2017-08-28 16:53:41 [D] supervisor:342 Select cluster(s): 6. 2017-08-28 16:53:43 [W] ControllerSettings:174 Running MahalanobisDist... 2017-08-28 16:53:43 [W] ControllerSettings:223 Calculating the Mahalanobis distance 2017-08-28 16:53:43 [W] ControllerSettings:192 1 2017-08-28 16:53:43 [W] ControllerSettings:197 2 2017-08-28 16:53:43 [W] ControllerSettings:199 3 2017-08-28 16:53:43 [W] ControllerSettings:201 4 2017-08-28 16:53:43 [W] ControllerSettings:203 (150, 36) 2017-08-28 16:53:43 [W] ControllerSettings:204 (36, 36) 2017-08-28 16:53:43 [W] ControllerSettings:205 5 2017-08-28 16:53:43 [E] cli:36 An error has occurred (TypeError): float() argument must be a string or a number, not 'tuple' 2017-08-28 16:53:43 [D] cli:39 Traceback (most recent call last): File "C:\Users\peter\Anaconda3\envs\phy\lib\site-packages\phy\gui\actions.py", line 85, in wrapped return f() File "C:\Users\peter\Dropbox\PhyPlugins\plugins\ControllerSettings.py", line 224, in MahalanobisDist MD = MahalanobisDistCalc(x,x) File "C:\Users\peter\Dropbox\PhyPlugins\plugins\ControllerSettings.py", line 206, in MahalanobisDistCalc ri = float(np.linalg.lstsq(np.transpose(R),np.transpose(Y-M))) TypeError: float() argument must be a string or a number, not 'tuple' 2017-08-28 16:53:48 [D] gui:179 Save the geometry state. 2017-08-28 16:53:48 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:53:48 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:53:48 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:53:48 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:53:48 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:53:48 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:53:48 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:53:48 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:53:48 [D] context:102 Save memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 16:53:48 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 16:53:48 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 16:53:48 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 16:53:48 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 16:55:46 [D] model:380 Loading spike clusters. 2017-08-28 16:55:46 [D] model:395 Loading templates. 2017-08-28 16:55:46 [D] model:416 Loading the whitening matrix. 2017-08-28 16:55:46 [D] model:420 Loading the inverse of the whitening matrix. 2017-08-28 16:55:46 [D] model:101 Loading traces at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Peter_MS12_170714_122034_concat.dat`. 2017-08-28 16:55:46 [D] context:67 Initialize joblib cache dir at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy`. 2017-08-28 16:55:46 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 16:55:46 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 16:55:46 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 16:55:46 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 16:55:46 [D] context:91 Load memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 16:55:46 [D] context:148 The file `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\new_cluster_id.pkl` doesn't exist. 2017-08-28 16:55:47 [D] context:134 Save data to `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\spikes_per_cluster.pkl`. 2017-08-28 16:55:47 [D] config:46 Load config file `C:\Users\peter\.phy\phy_config.py`. 2017-08-28 16:55:47 [D] __init__:40 Attached plugin ControllerSettings. 2017-08-28 16:55:47 [W] __init__:43 An error occurred when attaching plugin SpatialMap: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:55:47 [W] __init__:43 An error occurred when attaching plugin PhasePrecession: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:55:47 [W] __init__:43 An error occurred when attaching plugin PhasePrecession2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:55:47 [W] __init__:43 An error occurred when attaching plugin PosTrials: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:55:47 [W] __init__:43 An error occurred when attaching plugin PosTrials2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:55:47 [D] gui:432 Load the GUI state from `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:55:50 [D] gui:173 Load the geometry state. 2017-08-28 16:55:52 [D] supervisor:342 Select cluster(s): 6. 2017-08-28 16:55:53 [W] ControllerSettings:174 Running MahalanobisDist... 2017-08-28 16:55:53 [W] ControllerSettings:223 Calculating the Mahalanobis distance 2017-08-28 16:55:53 [W] ControllerSettings:192 1 2017-08-28 16:55:53 [W] ControllerSettings:197 2 2017-08-28 16:55:53 [W] ControllerSettings:199 3 2017-08-28 16:55:53 [W] ControllerSettings:201 4 2017-08-28 16:55:53 [W] ControllerSettings:203 (150, 36) 2017-08-28 16:55:53 [W] ControllerSettings:204 (36, 36) 2017-08-28 16:55:53 [W] ControllerSettings:205 5 2017-08-28 16:55:53 [W] ControllerSettings:207 6 2017-08-28 16:55:53 [W] ControllerSettings:208 2017-08-28 16:55:53 [W] ControllerSettings:209 2017-08-28 16:55:53 [W] ControllerSettings:210 (4,) 2017-08-28 16:55:53 [W] ControllerSettings:211 () 2017-08-28 16:55:53 [E] cli:36 An error has occurred (TypeError): can't multiply sequence by non-int of type 'list' 2017-08-28 16:55:53 [D] cli:39 Traceback (most recent call last): File "C:\Users\peter\Anaconda3\envs\phy\lib\site-packages\phy\gui\actions.py", line 85, in wrapped return f() File "C:\Users\peter\Dropbox\PhyPlugins\plugins\ControllerSettings.py", line 224, in MahalanobisDist MD = MahalanobisDistCalc(x,x) File "C:\Users\peter\Dropbox\PhyPlugins\plugins\ControllerSettings.py", line 212, in MahalanobisDistCalc d = np.transpose(np.sum(ri*ri, axis=0)).dot(rx-1) TypeError: can't multiply sequence by non-int of type 'list' 2017-08-28 16:55:59 [D] gui:179 Save the geometry state. 2017-08-28 16:55:59 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:55:59 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:55:59 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:55:59 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:55:59 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:55:59 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:55:59 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:55:59 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:55:59 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 16:55:59 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 16:55:59 [D] context:102 Save memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 16:55:59 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 16:55:59 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 16:57:03 [D] model:380 Loading spike clusters. 2017-08-28 16:57:03 [D] model:395 Loading templates. 2017-08-28 16:57:03 [D] model:416 Loading the whitening matrix. 2017-08-28 16:57:03 [D] model:420 Loading the inverse of the whitening matrix. 2017-08-28 16:57:03 [D] model:101 Loading traces at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Peter_MS12_170714_122034_concat.dat`. 2017-08-28 16:57:03 [D] context:67 Initialize joblib cache dir at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy`. 2017-08-28 16:57:03 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 16:57:03 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 16:57:03 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 16:57:03 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 16:57:03 [D] context:91 Load memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 16:57:03 [D] context:148 The file `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\new_cluster_id.pkl` doesn't exist. 2017-08-28 16:57:03 [D] context:134 Save data to `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\spikes_per_cluster.pkl`. 2017-08-28 16:57:03 [D] config:46 Load config file `C:\Users\peter\.phy\phy_config.py`. 2017-08-28 16:57:03 [D] __init__:40 Attached plugin ControllerSettings. 2017-08-28 16:57:03 [W] __init__:43 An error occurred when attaching plugin SpatialMap: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:57:04 [W] __init__:43 An error occurred when attaching plugin PhasePrecession: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:57:04 [W] __init__:43 An error occurred when attaching plugin PhasePrecession2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:57:04 [W] __init__:43 An error occurred when attaching plugin PosTrials: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:57:04 [W] __init__:43 An error occurred when attaching plugin PosTrials2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:57:04 [D] gui:432 Load the GUI state from `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:57:07 [D] gui:173 Load the geometry state. 2017-08-28 16:57:08 [D] supervisor:342 Select cluster(s): 6. 2017-08-28 16:57:10 [W] ControllerSettings:174 Running MahalanobisDist... 2017-08-28 16:57:10 [W] ControllerSettings:223 Calculating the Mahalanobis distance 2017-08-28 16:57:10 [W] ControllerSettings:192 1 2017-08-28 16:57:10 [W] ControllerSettings:197 2 2017-08-28 16:57:10 [W] ControllerSettings:199 3 2017-08-28 16:57:10 [W] ControllerSettings:201 4 2017-08-28 16:57:10 [W] ControllerSettings:203 (150, 36) 2017-08-28 16:57:10 [W] ControllerSettings:204 (36, 36) 2017-08-28 16:57:10 [W] ControllerSettings:205 5 2017-08-28 16:57:10 [W] ControllerSettings:207 6 2017-08-28 16:57:10 [W] ControllerSettings:208 2017-08-28 16:57:10 [W] ControllerSettings:209 2017-08-28 16:57:10 [W] ControllerSettings:210 (36, 150) 2017-08-28 16:57:10 [W] ControllerSettings:211 () 2017-08-28 16:57:10 [E] cli:36 An error has occurred (TypeError): can't multiply sequence by non-int of type 'list' 2017-08-28 16:57:10 [D] cli:39 Traceback (most recent call last): File "C:\Users\peter\Anaconda3\envs\phy\lib\site-packages\phy\gui\actions.py", line 85, in wrapped return f() File "C:\Users\peter\Dropbox\PhyPlugins\plugins\ControllerSettings.py", line 224, in MahalanobisDist MD = MahalanobisDistCalc(x,x) File "C:\Users\peter\Dropbox\PhyPlugins\plugins\ControllerSettings.py", line 212, in MahalanobisDistCalc d = np.transpose(np.sum(ri*ri, axis=0)).dot(rx-1) TypeError: can't multiply sequence by non-int of type 'list' 2017-08-28 16:57:30 [D] gui:179 Save the geometry state. 2017-08-28 16:57:30 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:57:30 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:57:30 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:57:30 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:57:30 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:57:30 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:57:30 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:57:30 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:57:30 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 16:57:30 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 16:57:30 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 16:57:30 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 16:57:30 [D] context:102 Save memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 16:58:14 [D] model:380 Loading spike clusters. 2017-08-28 16:58:14 [D] model:395 Loading templates. 2017-08-28 16:58:14 [D] model:416 Loading the whitening matrix. 2017-08-28 16:58:14 [D] model:420 Loading the inverse of the whitening matrix. 2017-08-28 16:58:14 [D] model:101 Loading traces at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Peter_MS12_170714_122034_concat.dat`. 2017-08-28 16:58:14 [D] context:67 Initialize joblib cache dir at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy`. 2017-08-28 16:58:14 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 16:58:14 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 16:58:14 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-28 16:58:14 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 16:58:14 [D] context:91 Load memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 16:58:14 [D] context:148 The file `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\new_cluster_id.pkl` doesn't exist. 2017-08-28 16:58:14 [D] context:134 Save data to `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\spikes_per_cluster.pkl`. 2017-08-28 16:58:14 [D] config:46 Load config file `C:\Users\peter\.phy\phy_config.py`. 2017-08-28 16:58:14 [D] __init__:40 Attached plugin ControllerSettings. 2017-08-28 16:58:14 [W] __init__:43 An error occurred when attaching plugin SpatialMap: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:58:14 [W] __init__:43 An error occurred when attaching plugin PhasePrecession: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:58:14 [W] __init__:43 An error occurred when attaching plugin PhasePrecession2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:58:14 [W] __init__:43 An error occurred when attaching plugin PosTrials: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:58:14 [W] __init__:43 An error occurred when attaching plugin PosTrials2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-28 16:58:14 [D] gui:432 Load the GUI state from `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:58:17 [D] gui:173 Load the geometry state. 2017-08-28 16:58:20 [D] supervisor:342 Select cluster(s): 6. 2017-08-28 16:58:22 [W] ControllerSettings:174 Running MahalanobisDist... 2017-08-28 16:58:22 [W] ControllerSettings:221 Calculating the Mahalanobis distance 2017-08-28 16:58:22 [W] ControllerSettings:192 1 2017-08-28 16:58:22 [W] ControllerSettings:197 2 2017-08-28 16:58:22 [W] ControllerSettings:199 3 2017-08-28 16:58:22 [W] ControllerSettings:201 4 2017-08-28 16:58:22 [W] ControllerSettings:203 (150, 36) 2017-08-28 16:58:22 [W] ControllerSettings:204 (36, 36) 2017-08-28 16:58:22 [W] ControllerSettings:205 5 2017-08-28 16:58:22 [W] ControllerSettings:207 6 2017-08-28 16:58:22 [E] cli:36 An error has occurred (TypeError): can't multiply sequence by non-int of type 'tuple' 2017-08-28 16:58:22 [D] cli:39 Traceback (most recent call last): File "C:\Users\peter\Anaconda3\envs\phy\lib\site-packages\phy\gui\actions.py", line 85, in wrapped return f() File "C:\Users\peter\Dropbox\PhyPlugins\plugins\ControllerSettings.py", line 222, in MahalanobisDist MD = MahalanobisDistCalc(x,x) File "C:\Users\peter\Dropbox\PhyPlugins\plugins\ControllerSettings.py", line 208, in MahalanobisDistCalc test = ri*ri TypeError: can't multiply sequence by non-int of type 'tuple' 2017-08-28 16:58:33 [D] gui:179 Save the geometry state. 2017-08-28 16:58:33 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:58:33 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:58:33 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:58:33 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:58:33 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:58:33 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:58:33 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:58:33 [D] gui:437 Save the GUI state to `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-28 16:58:33 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-28 16:58:33 [D] context:102 Save memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-28 16:58:33 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-28 16:58:33 [D] context:102 Save memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-28 16:58:33 [D] context:102 Save memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-29 10:39:21 [D] model:380 Loading spike clusters. 2017-08-29 10:39:21 [D] model:395 Loading templates. 2017-08-29 10:39:21 [D] model:416 Loading the whitening matrix. 2017-08-29 10:39:21 [D] model:420 Loading the inverse of the whitening matrix. 2017-08-29 10:39:21 [D] model:101 Loading traces at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Peter_MS12_170714_122034_concat.dat`. 2017-08-29 10:39:21 [D] context:67 Initialize joblib cache dir at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy`. 2017-08-29 10:39:21 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-29 10:39:21 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-29 10:39:21 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-29 10:39:21 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-29 10:39:21 [D] context:91 Load memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-29 10:39:21 [D] context:148 The file `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\new_cluster_id.pkl` doesn't exist. 2017-08-29 10:39:22 [D] context:134 Save data to `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\spikes_per_cluster.pkl`. 2017-08-29 10:39:22 [D] config:46 Load config file `C:\Users\peter\.phy\phy_config.py`. 2017-08-29 10:39:22 [D] __init__:40 Attached plugin ControllerSettings. 2017-08-29 10:39:22 [W] __init__:43 An error occurred when attaching plugin SpatialMap: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-29 10:39:22 [W] __init__:43 An error occurred when attaching plugin PhasePrecession: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-29 10:39:22 [W] __init__:43 An error occurred when attaching plugin PhasePrecession2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-29 10:39:22 [W] __init__:43 An error occurred when attaching plugin PosTrials: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-29 10:39:22 [W] __init__:43 An error occurred when attaching plugin PosTrials2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-29 10:39:22 [D] gui:432 Load the GUI state from `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-29 10:39:26 [D] gui:173 Load the geometry state. 2017-08-29 10:39:30 [D] supervisor:342 Select cluster(s): 6. 2017-08-29 10:39:32 [I] ControllerSettings:115 Running KlustaKwik on 150 spikes. 2017-08-29 10:39:37 [W] ControllerSettings:119 [ 38.37291336 -57.06886673 18.46163559 10.56725597 -14.37833977 1.58531976 -3.65273118 10.24630547 -3.24284267 -20.54165077 17.29384041 -6.09461594 0.65551096 0.8538838 -3.24572039 -0.82118773 0.56503302 -1.23588729 -15.91610241 7.49694157 -3.49461627 -5.92868471 4.33930922 -0.79099089 -18.46586037 8.48224831 -4.86423302 1.6768651 2.22412848 -0.63055611 -2.43607545 0.92640263 1.98785162 -3.93089032 0.20193765 -1.5100075 ] 2017-08-29 10:39:37 [W] ControllerSettings:121 [ 361 -538 174 99 -135 14 -34 96 -30 -193 163 -57 6 8 -30 -7 5 -11 -150 70 -32 -55 40 -7 -174 80 -45 15 20 -5 -22 8 18 -37 1 -14] 2017-08-29 10:39:37 [D] supervisor:181 Register next_cluster to 896: 7 2017-08-29 10:39:37 [I] supervisor:209 Assigned 150 spikes. 2017-08-29 10:39:39 [D] supervisor:342 Select cluster(s): 897, 896. 2017-08-29 10:39:39 [D] supervisor:525 Save the new cluster id: 898. 2017-08-29 10:39:39 [D] context:134 Save data to `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\new_cluster_id.json`. 2017-08-29 10:39:39 [W] ControllerSettings:149 Reclustering complete! 2017-08-29 10:40:04 [D] supervisor:342 Select cluster(s): 1. 2017-08-29 10:40:06 [D] supervisor:342 Select cluster(s): 1, 32. 2017-08-29 10:40:47 [W] ControllerSettings:155 Running K means clustering... 2017-08-29 10:41:41 [W] _qt:147 b'QObject::killTimers: timers cannot be stopped from another thread' 2017-08-29 10:41:45 [D] model:380 Loading spike clusters. 2017-08-29 10:41:45 [D] model:395 Loading templates. 2017-08-29 10:41:45 [D] model:416 Loading the whitening matrix. 2017-08-29 10:41:45 [D] model:420 Loading the inverse of the whitening matrix. 2017-08-29 10:41:45 [D] model:101 Loading traces at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Peter_MS12_170714_122034_concat.dat`. 2017-08-29 10:41:45 [D] context:67 Initialize joblib cache dir at `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy`. 2017-08-29 10:41:45 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_counts`. 2017-08-29 10:41:45 [D] context:91 Load memcache for `phycontrib.template.gui.get_template_for_cluster`. 2017-08-29 10:41:45 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channel`. 2017-08-29 10:41:45 [D] context:91 Load memcache for `phycontrib.template.gui.get_best_channels`. 2017-08-29 10:41:45 [D] context:91 Load memcache for `phycontrib.template.gui.get_probe_depth`. 2017-08-29 10:41:45 [D] context:134 Save data to `D:\IntanData\Peter_MS12\Peter_MS12_170714_122034_concat\Kilosort_2017-08-23_204519\.phy\spikes_per_cluster.pkl`. 2017-08-29 10:41:45 [D] config:46 Load config file `C:\Users\peter\.phy\phy_config.py`. 2017-08-29 10:41:45 [D] __init__:40 Attached plugin ControllerSettings. 2017-08-29 10:41:45 [W] __init__:43 An error occurred when attaching plugin SpatialMap: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-29 10:41:45 [W] __init__:43 An error occurred when attaching plugin PhasePrecession: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-29 10:41:45 [W] __init__:43 An error occurred when attaching plugin PhasePrecession2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-29 10:41:45 [W] __init__:43 An error occurred when attaching plugin PosTrials: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-29 10:41:45 [W] __init__:43 An error occurred when attaching plugin PosTrials2: [Errno 2] No such file or directory: 'posTime.npy'. 2017-08-29 10:41:45 [D] gui:432 Load the GUI state from `C:\Users\peter\.phy\TemplateGUI\state.json`. 2017-08-29 10:41:48 [D] gui:173 Load the geometry state. 2017-08-29 10:41:51 [D] supervisor:342 Select cluster(s): 24. 2017-08-29 10:44:02 [D] supervisor:342 Select cluster(s): 0. 2017-08-29 10:44:26 [W] _qt:147 b'QObject::killTimers: timers cannot be stopped from another thread'