2016-03-20 18:23:46  main:187                Starting SpikeDetekt version 0.3.0 on <DatRawReader /home/david/to_cut/z_novel_cage_test_160227_165229/enviro_test_160227_165229.dat>
2016-03-20 18:23:46  main:188                Parameters: 
{'__doc__': 'Contain default parameters.',
 'canonical_pcs': None,
 'chunk_overlap': 300,
 'chunk_size': 20000,
 'connected_component_join_size': 1,
 'detect_spikes': 'both',
 'diagnostics_path': None,
 'excerpt_size': 20000,
 'experiment_name': '/home/david/to_cut/z_novel_cage_test_160227_165229/13/enviro_test_160227_165229_sh13',
 'extract_s_after': 16,
 'extract_s_before': 16,
 'features_contiguous': True,
 'filter_butter_order': 3,
 'filter_high': 9500.0,
 'filter_low': 500.0,
 'nbits': 16,
 'nchannels': 128,
 'nexcerpts': 60,
 'nfeatures_per_channel': 6,
 'pca_nwaveforms_max': 20000,
 'prb_file': '13.prb',
 'raw_data_files': ['/home/david/to_cut/z_novel_cage_test_160227_165229/enviro_test_160227_165229.dat'],
 'sample_rate': 20000.0,
 'save_high': False,
 'save_low': True,
 'save_raw': False,
 'threshold_strong_std_factor': 4.5,
 'threshold_weak_std_factor': 2.0,
 'use_single_threshold': True,
 'voltage_gain': 10.0,
 'waveforms_nsamples': 32,
 'weight_power': 2}
2016-03-20 18:24:09  main:200                Threshold: DoubleThreshold(strong=array([ 290.28560067]), weak=array([ 129.01582252]))
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2016-03-20 18:24:41  progressbar:97          1% complete, 31s elapsed, 37m 45s remaining. 379 spikes found.
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2016-03-20 18:25:11  progressbar:97          2% complete, 1m 1s elapsed, 35m 14s remaining. 746 spikes found.
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2016-03-20 18:25:41  progressbar:97          4% complete, 1m 32s elapsed, 34m 54s remaining. 1180 spikes found.
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2016-03-20 18:26:12  progressbar:97          5% complete, 2m 2s elapsed, 33m 34s remaining. 1883 spikes found.
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2016-03-20 18:30:14  progressbar:97          17% complete, 6m 4s elapsed, 27m 55s remaining. 6257 spikes found.
2016-03-20 18:30:14  main:222                Processing chunk <Chunk (10874400/60794640), recording 0>...
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2016-03-20 18:30:45  progressbar:97          19% complete, 6m 35s elapsed, 27m 22s remaining. 7059 spikes found.
2016-03-20 18:30:45  main:222                Processing chunk <Chunk (11800300/60794640), recording 0>...
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2016-03-20 18:31:15  progressbar:97          20% complete, 7m 5s elapsed, 26m 54s remaining. 8098 spikes found.
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2016-03-20 18:31:46  progressbar:97          22% complete, 7m 36s elapsed, 26m 45s remaining. 10482 spikes found.
2016-03-20 18:31:46  main:222                Processing chunk <Chunk (13455100/60794640), recording 0>...
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2016-03-20 18:32:16  progressbar:97          23% complete, 8m 6s elapsed, 26m 41s remaining. 12852 spikes found.
2016-03-20 18:32:16  main:222                Processing chunk <Chunk (14164300/60794640), recording 0>...
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2016-03-20 18:32:46  progressbar:97          24% complete, 8m 37s elapsed, 26m 50s remaining. 16220 spikes found.
2016-03-20 18:32:46  main:222                Processing chunk <Chunk (14775000/60794640), recording 0>...
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2016-03-20 18:33:17  progressbar:97          25% complete, 9m 7s elapsed, 26m 52s remaining. 18791 spikes found.
2016-03-20 18:33:17  main:222                Processing chunk <Chunk (15405400/60794640), recording 0>...
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2016-03-20 18:33:47  progressbar:97          26% complete, 9m 37s elapsed, 26m 47s remaining. 22214 spikes found.
2016-03-20 18:33:47  main:222                Processing chunk <Chunk (16075200/60794640), recording 0>...
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2016-03-20 18:34:18  progressbar:97          27% complete, 10m 9s elapsed, 26m 50s remaining. 24876 spikes found.
2016-03-20 18:34:18  main:222                Processing chunk <Chunk (16685900/60794640), recording 0>...
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2016-03-20 18:34:49  progressbar:97          28% complete, 10m 39s elapsed, 27m 3s remaining. 27861 spikes found.
2016-03-20 18:34:49  main:222                Processing chunk <Chunk (17178400/60794640), recording 0>...
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2016-03-20 18:35:19  progressbar:97          29% complete, 11m 10s elapsed, 27m 17s remaining. 30793 spikes found.
2016-03-20 18:35:19  main:222                Processing chunk <Chunk (17651200/60794640), recording 0>...
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2016-03-20 18:35:50  progressbar:97          29% complete, 11m 41s elapsed, 27m 25s remaining. 33478 spikes found.
2016-03-20 18:35:50  main:222                Processing chunk <Chunk (18163400/60794640), recording 0>...
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2016-03-20 18:36:20  progressbar:97          30% complete, 12m 11s elapsed, 27m 28s remaining. 35777 spikes found.
2016-03-20 18:36:20  main:222                Processing chunk <Chunk (18675600/60794640), recording 0>...
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2016-03-20 18:36:51  progressbar:97          31% complete, 12m 41s elapsed, 27m 29s remaining. 38352 spikes found.
2016-03-20 18:36:51  main:222                Processing chunk <Chunk (19207500/60794640), recording 0>...
2016-03-20 18:36:53  main:222                Processing chunk <Chunk (19227200/60794640), recording 0>...
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2016-03-20 18:37:22  progressbar:97          32% complete, 13m 12s elapsed, 27m 11s remaining. 41575 spikes found.
2016-03-20 18:37:22  main:222                Processing chunk <Chunk (19877300/60794640), recording 0>...
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2016-03-20 18:37:53  progressbar:97          33% complete, 13m 43s elapsed, 26m 47s remaining. 43937 spikes found.
2016-03-20 18:37:53  main:222                Processing chunk <Chunk (20586500/60794640), recording 0>...
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2016-03-20 18:38:23  progressbar:97          34% complete, 14m 14s elapsed, 26m 37s remaining. 46650 spikes found.
2016-03-20 18:38:23  main:222                Processing chunk <Chunk (21177500/60794640), recording 0>...
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2016-03-20 18:38:54  progressbar:97          36% complete, 14m 44s elapsed, 26m 10s remaining. 49024 spikes found.
2016-03-20 18:38:54  main:222                Processing chunk <Chunk (21906400/60794640), recording 0>...
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2016-03-20 18:39:25  progressbar:97          37% complete, 15m 15s elapsed, 25m 38s remaining. 51789 spikes found.
2016-03-20 18:39:25  main:222                Processing chunk <Chunk (22674700/60794640), recording 0>...
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2016-03-20 18:39:55  progressbar:97          38% complete, 15m 45s elapsed, 25m 11s remaining. 54275 spikes found.
2016-03-20 18:39:55  main:222                Processing chunk <Chunk (23403600/60794640), recording 0>...
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2016-03-20 18:40:25  progressbar:97          39% complete, 16m 16s elapsed, 24m 40s remaining. 56569 spikes found.
2016-03-20 18:40:25  main:222                Processing chunk <Chunk (24152200/60794640), recording 0>...
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2016-03-20 18:40:56  progressbar:97          41% complete, 16m 46s elapsed, 24m 7s remaining. 58996 spikes found.
2016-03-20 18:40:56  main:222                Processing chunk <Chunk (24940200/60794640), recording 0>...
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2016-03-20 18:41:27  progressbar:97          42% complete, 17m 17s elapsed, 23m 36s remaining. 61743 spikes found.
2016-03-20 18:41:27  main:222                Processing chunk <Chunk (25708500/60794640), recording 0>...
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2016-03-20 18:41:57  progressbar:97          43% complete, 17m 47s elapsed, 23m 11s remaining. 63724 spikes found.
2016-03-20 18:41:57  main:222                Processing chunk <Chunk (26398000/60794640), recording 0>...
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2016-03-20 18:42:28  progressbar:97          44% complete, 18m 18s elapsed, 22m 39s remaining. 65582 spikes found.
2016-03-20 18:42:28  main:222                Processing chunk <Chunk (27166300/60794640), recording 0>...
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2016-03-20 18:42:58  progressbar:97          45% complete, 18m 48s elapsed, 22m 7s remaining. 67354 spikes found.
2016-03-20 18:42:58  main:222                Processing chunk <Chunk (27934600/60794640), recording 0>...
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2016-03-20 18:43:29  progressbar:97          47% complete, 19m 19s elapsed, 21m 39s remaining. 69205 spikes found.
2016-03-20 18:43:29  main:222                Processing chunk <Chunk (28663500/60794640), recording 0>...
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2016-03-20 18:43:59  progressbar:97          48% complete, 19m 49s elapsed, 21m 11s remaining. 70958 spikes found.
2016-03-20 18:43:59  main:222                Processing chunk <Chunk (29392400/60794640), recording 0>...
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2016-03-20 18:44:30  progressbar:97          49% complete, 20m 20s elapsed, 20m 45s remaining. 72290 spikes found.
2016-03-20 18:44:30  main:222                Processing chunk <Chunk (30081900/60794640), recording 0>...
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2016-03-20 18:44:59  main:222                Processing chunk <Chunk (30869900/60794640), recording 0>...
2016-03-20 18:45:00  progressbar:97          50% complete, 20m 50s elapsed, 20m 10s remaining. 73722 spikes found.
2016-03-20 18:45:00  main:222                Processing chunk <Chunk (30889600/60794640), recording 0>...
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2016-03-20 18:45:29  main:222                Processing chunk <Chunk (31598800/60794640), recording 0>...
2016-03-20 18:45:31  progressbar:97          52% complete, 21m 21s elapsed, 19m 42s remaining. 75069 spikes found.
2016-03-20 18:45:31  main:222                Processing chunk <Chunk (31618500/60794640), recording 0>...
2016-03-20 18:45:31  main:222                Processing chunk <Chunk (31638200/60794640), recording 0>...
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2016-03-20 18:46:01  progressbar:97          53% complete, 21m 51s elapsed, 19m 11s remaining. 76412 spikes found.
2016-03-20 18:46:01  main:222                Processing chunk <Chunk (32367100/60794640), recording 0>...
2016-03-20 18:46:02  main:222                Processing chunk <Chunk (32386800/60794640), recording 0>...
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2016-03-20 18:46:32  progressbar:97          54% complete, 22m 22s elapsed, 18m 41s remaining. 77625 spikes found.
2016-03-20 18:46:32  main:222                Processing chunk <Chunk (33115700/60794640), recording 0>...
2016-03-20 18:46:32  main:222                Processing chunk <Chunk (33135400/60794640), recording 0>...
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2016-03-20 18:47:01  main:222                Processing chunk <Chunk (33884000/60794640), recording 0>...
2016-03-20 18:47:02  progressbar:97          55% complete, 22m 53s elapsed, 18m 9s remaining. 79016 spikes found.
2016-03-20 18:47:02  main:222                Processing chunk <Chunk (33903700/60794640), recording 0>...
2016-03-20 18:47:03  main:222                Processing chunk <Chunk (33923400/60794640), recording 0>...
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2016-03-20 18:47:33  progressbar:97          57% complete, 23m 23s elapsed, 17m 35s remaining. 80208 spikes found.
2016-03-20 18:47:33  main:222                Processing chunk <Chunk (34691700/60794640), recording 0>...
2016-03-20 18:47:33  main:222                Processing chunk <Chunk (34711400/60794640), recording 0>...
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2016-03-20 18:48:03  progressbar:97          58% complete, 23m 53s elapsed, 17m 10s remaining. 83178 spikes found.
2016-03-20 18:48:03  main:222                Processing chunk <Chunk (35361500/60794640), recording 0>...
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2016-03-20 18:48:34  progressbar:97          59% complete, 24m 24s elapsed, 16m 39s remaining. 85626 spikes found.
2016-03-20 18:48:34  main:222                Processing chunk <Chunk (36129800/60794640), recording 0>...
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2016-03-20 18:49:04  progressbar:97          60% complete, 24m 54s elapsed, 16m 7s remaining. 87824 spikes found.
2016-03-20 18:49:04  main:222                Processing chunk <Chunk (36898100/60794640), recording 0>...
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2016-03-20 18:49:34  progressbar:97          61% complete, 25m 24s elapsed, 15m 40s remaining. 90298 spikes found.
2016-03-20 18:49:34  main:222                Processing chunk <Chunk (37607300/60794640), recording 0>...
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2016-03-20 18:50:05  progressbar:97          63% complete, 25m 55s elapsed, 15m 6s remaining. 93032 spikes found.
2016-03-20 18:50:05  main:222                Processing chunk <Chunk (38415000/60794640), recording 0>...
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2016-03-20 18:50:35  progressbar:97          64% complete, 26m 25s elapsed, 14m 34s remaining. 95692 spikes found.
2016-03-20 18:50:35  main:222                Processing chunk <Chunk (39183300/60794640), recording 0>...
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2016-03-20 18:51:06  progressbar:97          65% complete, 26m 56s elapsed, 14m 15s remaining. 97738 spikes found.
2016-03-20 18:51:06  main:222                Processing chunk <Chunk (39754600/60794640), recording 0>...
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2016-03-20 18:51:36  progressbar:97          66% complete, 27m 26s elapsed, 13m 51s remaining. 99703 spikes found.
2016-03-20 18:51:36  main:222                Processing chunk <Chunk (40404700/60794640), recording 0>...
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2016-03-20 18:52:06  progressbar:97          67% complete, 27m 56s elapsed, 13m 19s remaining. 101919 spikes found.
2016-03-20 18:52:06  main:222                Processing chunk <Chunk (41173000/60794640), recording 0>...
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2016-03-20 18:52:37  progressbar:97          68% complete, 28m 27s elapsed, 12m 53s remaining. 104212 spikes found.
2016-03-20 18:52:37  main:222                Processing chunk <Chunk (41842800/60794640), recording 0>...
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2016-03-20 18:53:07  progressbar:97          69% complete, 28m 58s elapsed, 12m 33s remaining. 106167 spikes found.
2016-03-20 18:53:07  main:222                Processing chunk <Chunk (42414100/60794640), recording 0>...
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2016-03-20 18:53:38  progressbar:97          70% complete, 29m 28s elapsed, 12m 17s remaining. 109855 spikes found.
2016-03-20 18:53:38  main:222                Processing chunk <Chunk (42906600/60794640), recording 0>...
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2016-03-20 18:54:08  progressbar:97          71% complete, 29m 58s elapsed, 11m 44s remaining. 112085 spikes found.
2016-03-20 18:54:08  main:222                Processing chunk <Chunk (43674900/60794640), recording 0>...
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2016-03-20 18:54:38  progressbar:97          73% complete, 30m 29s elapsed, 11m 14s remaining. 114926 spikes found.
2016-03-20 18:54:38  main:222                Processing chunk <Chunk (44423500/60794640), recording 0>...
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2016-03-20 18:55:09  progressbar:97          74% complete, 30m 59s elapsed, 10m 45s remaining. 117933 spikes found.
2016-03-20 18:55:09  main:222                Processing chunk <Chunk (45132700/60794640), recording 0>...
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2016-03-20 18:55:39  progressbar:97          75% complete, 31m 29s elapsed, 10m 13s remaining. 121063 spikes found.
2016-03-20 18:55:39  main:222                Processing chunk <Chunk (45901000/60794640), recording 0>...
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2016-03-20 18:56:10  progressbar:97          76% complete, 32m 0s elapsed, 9m 44s remaining. 123042 spikes found.
2016-03-20 18:56:10  main:222                Processing chunk <Chunk (46610200/60794640), recording 0>...
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2016-03-20 18:56:41  progressbar:97          77% complete, 32m 31s elapsed, 9m 24s remaining. 125170 spikes found.
2016-03-20 18:56:41  main:222                Processing chunk <Chunk (47161800/60794640), recording 0>...
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2016-03-20 18:57:11  progressbar:97          78% complete, 33m 1s elapsed, 8m 59s remaining. 127062 spikes found.
2016-03-20 18:57:11  main:222                Processing chunk <Chunk (47792200/60794640), recording 0>...
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2016-03-20 18:58:12  progressbar:97          80% complete, 34m 2s elapsed, 8m 2s remaining. 131851 spikes found.
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2016-03-20 18:58:42  progressbar:97          81% complete, 34m 32s elapsed, 7m 40s remaining. 133867 spikes found.
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2016-03-20 18:59:13  progressbar:97          82% complete, 35m 3s elapsed, 7m 13s remaining. 135499 spikes found.
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2016-03-20 18:59:43  progressbar:97          84% complete, 35m 34s elapsed, 6m 41s remaining. 136987 spikes found.
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2016-03-20 19:00:14  progressbar:97          85% complete, 36m 4s elapsed, 6m 8s remaining. 138852 spikes found.
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2016-03-20 19:03:47  progressbar:97          93% complete, 39m 38s elapsed, 2m 32s remaining. 149442 spikes found.
2016-03-20 19:03:47  main:222                Processing chunk <Chunk (57130000/60794640), recording 0>...
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2016-03-20 19:04:18  progressbar:97          95% complete, 40m 8s elapsed, 2m 2s remaining. 150480 spikes found.
2016-03-20 19:04:18  main:222                Processing chunk <Chunk (57858900/60794640), recording 0>...
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2016-03-20 19:04:49  progressbar:97          96% complete, 40m 39s elapsed, 1m 35s remaining. 151756 spikes found.
2016-03-20 19:04:49  main:222                Processing chunk <Chunk (58509000/60794640), recording 0>...
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2016-03-20 19:05:20  progressbar:97          97% complete, 41m 10s elapsed, 1m 12s remaining. 153570 spikes found.
2016-03-20 19:05:20  main:222                Processing chunk <Chunk (59060600/60794640), recording 0>...
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2016-03-20 19:05:50  progressbar:97          98% complete, 41m 40s elapsed, 43s remaining. 154957 spikes found.
2016-03-20 19:05:50  main:222                Processing chunk <Chunk (59750100/60794640), recording 0>...
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2016-03-20 19:06:21  progressbar:97          99% complete, 42m 11s elapsed, 14s remaining. 156346 spikes found.
2016-03-20 19:06:21  main:222                Processing chunk <Chunk (60459300/60794640), recording 0>...
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2016-03-20 19:06:34  progressbar:97          100% complete, 42m 25s elapsed, 0s remaining. 157083 spikes found.