2016-10-01 17:56:52  main:187                Starting SpikeDetekt version 0.3.0 on <DatRawReader /zpool/tingley/DT5/20160929_0um_0um_merge/20160929_0um_0um_merge.dat>
2016-10-01 17:56:52  main:188                Parameters: 
{'__doc__': 'Contain default parameters.',
 'canonical_pcs': None,
 'chunk_overlap': 300,
 'chunk_size': 20000,
 'connected_component_join_size': 1,
 'detect_spikes': 'negative',
 'diagnostics_path': None,
 'excerpt_size': 20000,
 'experiment_name': '/zpool/tingley/DT5/20160929_0um_0um_merge/1/20160929_0um_0um_merge_sh1',
 'extract_s_after': 16,
 'extract_s_before': 16,
 'features_contiguous': True,
 'filter_butter_order': 3,
 'filter_high': 9500.0,
 'filter_low': 500.0,
 'nbits': 16,
 'nchannels': 96,
 'nexcerpts': 60,
 'nfeatures_per_channel': 6,
 'pca_nwaveforms_max': 20000,
 'prb_file': '1.prb',
 'raw_data_files': ['/zpool/tingley/DT5/20160929_0um_0um_merge/20160929_0um_0um_merge.dat'],
 'sample_rate': 20000.0,
 'save_high': False,
 'save_low': False,
 'save_raw': False,
 'threshold_strong_std_factor': 4.5,
 'threshold_weak_std_factor': 2.0,
 'use_single_threshold': False,
 'voltage_gain': 10.0,
 'waveforms_nsamples': 32,
 'weight_power': 2}
2016-10-01 17:57:28  main:200                Threshold: DoubleThreshold(strong=array([ 296.19257476,  299.44593262,  310.53619631,  298.47518459,
        302.22349129,  305.64647198,  300.92584924,  290.32411886,
        283.73467425,  294.1117754 ,  298.36977208,  299.98470196,
        286.18672245,  291.47486653,  278.05932964,  285.00463414,
        303.77280278,  288.40218293,  293.43711579,  300.91318944,
        301.11948479,  301.64231704,  274.66985581,  292.65676142,
        306.96940994,  312.85245971,  293.79751467,  308.63873688,
        299.42483394,  306.07557926,  273.34954322,  246.57812029,
        218.9879471 ,  213.71741454,  210.86634788,  184.5600158 ,
        212.70232644,  196.83583471,  198.62654789,  215.86945303,
        202.42588916,  202.49510911,  204.79127049,  215.93399934,
        213.27025472,  210.8883433 ,  204.09456665,  213.18787187,
        293.83971643,  296.54217409,  281.67103791,  282.22120301,
        279.56840831,  279.51773525,  275.34640643,  272.63644792,
        278.93012344,  273.93849388,  260.6147316 ,  272.87966007,
        206.16854872,  203.01846419,  200.06617596,  202.38566085,
        262.42827296,  272.34770979,  272.92324371,  269.53741413,
        329.53415687,  337.25402649,  336.78163685,  329.7727957 ,
        337.53801561,  336.52334182,  334.88713521,  344.77243927,
        329.06419751,  333.22517632,  353.46451537,  335.97945405,
        205.08248318,  218.36222127,  205.0421734 ,  205.91360725,
        207.66591011,  211.98804298,  253.74372056,  250.80807968,
        248.61386531,  186.38998999,  264.16830083,  239.9699785 ,
        270.60639587,  252.64710807,  275.68099448,  290.52187669]), weak=array([ 131.64114434,  133.08708117,  138.01608725,  132.65563759,
        134.32155169,  135.84287644,  133.74482189,  129.03294172,
        126.10429966,  130.71634462,  132.60878759,  133.3265342 ,
        127.19409887,  129.54438513,  123.58192428,  126.66872628,
        135.01013457,  128.17874797,  130.41649591,  133.73919531,
        133.83088213,  134.06325202,  122.07549147,  130.06967174,
        136.43084886,  139.04553765,  130.57667319,  137.17277195,
        133.07770397,  136.03359078,  121.48868587,  109.59027569,
         97.32797649,   94.98551757,   93.71837684,   82.02667369,
         94.53436731,   87.48259321,   88.27846573,   95.94197912,
         89.96706185,   89.99782627,   91.01834244,   95.97066638,
         94.78677988,   93.72815258,   90.70869629,   94.75016527,
        130.59542952,  131.79652182,  125.18712796,  125.43164578,
        124.25262592,  124.23010455,  122.37618063,  121.17175463,
        123.96894375,  121.75044173,  115.8287696 ,  121.27984892,
         91.6304661 ,   90.23042853,   88.91830043,   89.9491826 ,
        116.63478798,  121.04342657,  121.29921943,  119.79440628,
        146.45962528,  149.89067844,  149.68072749,  146.56568698,
        150.01689583,  149.5659297 ,  148.83872676,  153.23219523,
        146.25075445,  148.10007836,  157.09534016,  149.3242018 ,
         91.1477703 ,   97.04987612,   91.12985484,   91.51715878,
         92.29596005,   94.21690799,  112.77498692,  111.47025764,
        110.49505125,   82.83999555,  117.4081337 ,  106.65332378,
        120.26950928,  112.28760359,  122.52488644,  129.12083409]))
2016-10-01 17:57:28  main:222                Processing chunk <Chunk (0/91000080), recording 0>...
2016-10-01 17:57:28  progressbar:97          0% complete, 0s elapsed. 107 spikes found.
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2016-10-01 17:57:58  progressbar:97          0% complete, 30s elapsed, 1h 7m 0s remaining. 5714 spikes found.
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2016-10-01 17:58:29  progressbar:97          1% complete, 1m 1s elapsed, 57m 6s remaining. 10891 spikes found.
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2016-10-01 17:58:59  progressbar:97          2% complete, 1m 31s elapsed, 51m 23s remaining. 16272 spikes found.
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2016-10-01 18:03:02  progressbar:97          13% complete, 5m 34s elapsed, 36m 17s remaining. 51615 spikes found.
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2016-10-01 18:05:35  progressbar:97          20% complete, 8m 7s elapsed, 30m 32s remaining. 63797 spikes found.
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2016-10-01 18:06:05  progressbar:97          22% complete, 8m 37s elapsed, 29m 35s remaining. 65995 spikes found.
2016-10-01 18:06:05  main:222                Processing chunk <Chunk (20527400/91000080), recording 0>...
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2016-10-01 18:06:35  progressbar:97          23% complete, 9m 7s elapsed, 29m 18s remaining. 67715 spikes found.
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2016-10-01 18:07:06  progressbar:97          24% complete, 9m 38s elapsed, 29m 44s remaining. 69861 spikes found.
2016-10-01 18:07:06  main:222                Processing chunk <Chunk (22261000/91000080), recording 0>...
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2016-10-01 18:07:36  progressbar:97          24% complete, 10m 8s elapsed, 30m 31s remaining. 70614 spikes found.
2016-10-01 18:07:36  main:222                Processing chunk <Chunk (22694400/91000080), recording 0>...
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2016-10-01 18:08:07  progressbar:97          25% complete, 10m 39s elapsed, 30m 59s remaining. 71829 spikes found.
2016-10-01 18:08:07  main:222                Processing chunk <Chunk (23285400/91000080), recording 0>...
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2016-10-01 18:08:38  progressbar:97          26% complete, 11m 9s elapsed, 31m 15s remaining. 74160 spikes found.
2016-10-01 18:08:38  main:222                Processing chunk <Chunk (23955200/91000080), recording 0>...
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2016-10-01 18:09:08  progressbar:97          27% complete, 11m 40s elapsed, 30m 25s remaining. 77508 spikes found.
2016-10-01 18:09:08  main:222                Processing chunk <Chunk (25235700/91000080), recording 0>...
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2016-10-01 18:09:38  progressbar:97          28% complete, 12m 10s elapsed, 30m 5s remaining. 80595 spikes found.
2016-10-01 18:09:38  main:222                Processing chunk <Chunk (26220700/91000080), recording 0>...
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2016-10-01 18:16:45  progressbar:97          46% complete, 19m 17s elapsed, 22m 29s remaining. 133618 spikes found.
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2016-10-01 18:17:15  progressbar:97          47% complete, 19m 47s elapsed, 22m 3s remaining. 138924 spikes found.
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2016-10-01 18:21:48  progressbar:97          59% complete, 24m 20s elapsed, 16m 26s remaining. 187571 spikes found.
2016-10-01 18:21:48  main:222                Processing chunk <Chunk (54312900/91000080), recording 0>...
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2016-10-01 18:22:18  progressbar:97          60% complete, 24m 50s elapsed, 16m 13s remaining. 193899 spikes found.
2016-10-01 18:22:18  main:222                Processing chunk <Chunk (55061500/91000080), recording 0>...
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2016-10-01 18:22:48  progressbar:97          61% complete, 25m 20s elapsed, 15m 59s remaining. 200847 spikes found.
2016-10-01 18:22:48  main:222                Processing chunk <Chunk (55790400/91000080), recording 0>...
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2016-10-01 18:23:19  progressbar:97          62% complete, 25m 51s elapsed, 15m 48s remaining. 207795 spikes found.
2016-10-01 18:23:19  main:222                Processing chunk <Chunk (56479900/91000080), recording 0>...
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2016-10-01 18:23:49  progressbar:97          63% complete, 26m 21s elapsed, 15m 23s remaining. 215341 spikes found.
2016-10-01 18:23:49  main:222                Processing chunk <Chunk (57445200/91000080), recording 0>...
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2016-10-01 18:24:19  progressbar:97          64% complete, 26m 51s elapsed, 14m 51s remaining. 222602 spikes found.
2016-10-01 18:24:19  main:222                Processing chunk <Chunk (58587800/91000080), recording 0>...
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2016-10-01 18:24:50  progressbar:97          65% complete, 27m 22s elapsed, 14m 34s remaining. 229301 spikes found.
2016-10-01 18:24:50  main:222                Processing chunk <Chunk (59375800/91000080), recording 0>...
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2016-10-01 18:25:20  progressbar:97          66% complete, 27m 52s elapsed, 14m 4s remaining. 236452 spikes found.
2016-10-01 18:25:20  main:222                Processing chunk <Chunk (60459300/91000080), recording 0>...
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2016-10-01 18:25:50  progressbar:97          67% complete, 28m 22s elapsed, 13m 45s remaining. 242304 spikes found.
2016-10-01 18:25:50  main:222                Processing chunk <Chunk (61286700/91000080), recording 0>...
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2016-10-01 18:26:21  progressbar:97          68% complete, 28m 53s elapsed, 13m 29s remaining. 249220 spikes found.
2016-10-01 18:26:21  main:222                Processing chunk <Chunk (62035300/91000080), recording 0>...
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2016-10-01 18:26:51  progressbar:97          68% complete, 29m 23s elapsed, 13m 16s remaining. 256043 spikes found.
2016-10-01 18:26:51  main:222                Processing chunk <Chunk (62685400/91000080), recording 0>...
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2016-10-01 18:27:21  progressbar:97          69% complete, 29m 53s elapsed, 13m 0s remaining. 262893 spikes found.
2016-10-01 18:27:21  main:222                Processing chunk <Chunk (63394600/91000080), recording 0>...
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2016-10-01 18:27:52  progressbar:97          70% complete, 30m 23s elapsed, 12m 46s remaining. 269696 spikes found.
2016-10-01 18:27:52  main:222                Processing chunk <Chunk (64064400/91000080), recording 0>...
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2016-10-01 18:28:22  progressbar:97          71% complete, 30m 54s elapsed, 12m 33s remaining. 276740 spikes found.
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2016-10-01 18:28:53  progressbar:97          71% complete, 31m 25s elapsed, 12m 17s remaining. 283931 spikes found.
2016-10-01 18:28:53  main:222                Processing chunk <Chunk (65404000/91000080), recording 0>...
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2016-10-01 18:29:23  progressbar:97          72% complete, 31m 55s elapsed, 12m 0s remaining. 290670 spikes found.
2016-10-01 18:29:23  main:222                Processing chunk <Chunk (66113200/91000080), recording 0>...
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2016-10-01 18:29:53  progressbar:97          73% complete, 32m 25s elapsed, 11m 42s remaining. 296550 spikes found.
2016-10-01 18:29:53  main:222                Processing chunk <Chunk (66861800/91000080), recording 0>...
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2016-10-01 18:31:54  progressbar:97          76% complete, 34m 25s elapsed, 10m 25s remaining. 322404 spikes found.
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2016-10-01 18:32:24  progressbar:97          77% complete, 34m 56s elapsed, 9m 52s remaining. 328688 spikes found.
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