2016-10-01 18:07:03  main:187                Starting SpikeDetekt version 0.3.0 on <DatRawReader /zpool/tingley/DT5/20160929_0um_0um_merge/20160929_0um_0um_merge.dat>
2016-10-01 18:07:03  main:188                Parameters: 
{'__doc__': 'Contain default parameters.',
 'canonical_pcs': None,
 'chunk_overlap': 300,
 'chunk_size': 20000,
 'connected_component_join_size': 1,
 'detect_spikes': 'negative',
 'diagnostics_path': None,
 'excerpt_size': 20000,
 'experiment_name': '/zpool/tingley/DT5/20160929_0um_0um_merge/2/20160929_0um_0um_merge_sh2',
 'extract_s_after': 16,
 'extract_s_before': 16,
 'features_contiguous': True,
 'filter_butter_order': 3,
 'filter_high': 9500.0,
 'filter_low': 500.0,
 'nbits': 16,
 'nchannels': 96,
 'nexcerpts': 60,
 'nfeatures_per_channel': 6,
 'pca_nwaveforms_max': 20000,
 'prb_file': '2.prb',
 'raw_data_files': ['/zpool/tingley/DT5/20160929_0um_0um_merge/20160929_0um_0um_merge.dat'],
 'sample_rate': 20000.0,
 'save_high': False,
 'save_low': False,
 'save_raw': False,
 'threshold_strong_std_factor': 4.5,
 'threshold_weak_std_factor': 2.0,
 'use_single_threshold': False,
 'voltage_gain': 10.0,
 'waveforms_nsamples': 32,
 'weight_power': 2}
2016-10-01 18:08:13  main:200                Threshold: DoubleThreshold(strong=array([ 296.19257476,  299.44593262,  310.53619631,  298.47518459,
        302.22349129,  305.64647198,  300.92584924,  290.32411886,
        283.73467425,  294.1117754 ,  298.36977208,  299.98470196,
        286.18672245,  291.47486653,  278.05932964,  285.00463414,
        303.77280278,  288.40218293,  293.43711579,  300.91318944,
        301.11948479,  301.64231704,  274.66985581,  292.65676142,
        306.96940994,  312.85245971,  293.79751467,  308.63873688,
        299.42483394,  306.07557926,  273.34954322,  246.57812029,
        218.9879471 ,  213.71741454,  210.86634788,  184.5600158 ,
        212.70232644,  196.83583471,  198.62654789,  215.86945303,
        202.42588916,  202.49510911,  204.79127049,  215.93399934,
        213.27025472,  210.8883433 ,  204.09456665,  213.18787187,
        293.83971643,  296.54217409,  281.67103791,  282.22120301,
        279.56840831,  279.51773525,  275.34640643,  272.63644792,
        278.93012344,  273.93849388,  260.6147316 ,  272.87966007,
        206.16854872,  203.01846419,  200.06617596,  202.38566085,
        262.42827296,  272.34770979,  272.92324371,  269.53741413,
        329.53415687,  337.25402649,  336.78163685,  329.7727957 ,
        337.53801561,  336.52334182,  334.88713521,  344.77243927,
        329.06419751,  333.22517632,  353.46451537,  335.97945405,
        205.08248318,  218.36222127,  205.0421734 ,  205.91360725,
        207.66591011,  211.98804298,  253.74372056,  250.80807968,
        248.61386531,  186.38998999,  264.16830083,  239.9699785 ,
        270.60639587,  252.64710807,  275.68099448,  290.52187669]), weak=array([ 131.64114434,  133.08708117,  138.01608725,  132.65563759,
        134.32155169,  135.84287644,  133.74482189,  129.03294172,
        126.10429966,  130.71634462,  132.60878759,  133.3265342 ,
        127.19409887,  129.54438513,  123.58192428,  126.66872628,
        135.01013457,  128.17874797,  130.41649591,  133.73919531,
        133.83088213,  134.06325202,  122.07549147,  130.06967174,
        136.43084886,  139.04553765,  130.57667319,  137.17277195,
        133.07770397,  136.03359078,  121.48868587,  109.59027569,
         97.32797649,   94.98551757,   93.71837684,   82.02667369,
         94.53436731,   87.48259321,   88.27846573,   95.94197912,
         89.96706185,   89.99782627,   91.01834244,   95.97066638,
         94.78677988,   93.72815258,   90.70869629,   94.75016527,
        130.59542952,  131.79652182,  125.18712796,  125.43164578,
        124.25262592,  124.23010455,  122.37618063,  121.17175463,
        123.96894375,  121.75044173,  115.8287696 ,  121.27984892,
         91.6304661 ,   90.23042853,   88.91830043,   89.9491826 ,
        116.63478798,  121.04342657,  121.29921943,  119.79440628,
        146.45962528,  149.89067844,  149.68072749,  146.56568698,
        150.01689583,  149.5659297 ,  148.83872676,  153.23219523,
        146.25075445,  148.10007836,  157.09534016,  149.3242018 ,
         91.1477703 ,   97.04987612,   91.12985484,   91.51715878,
         92.29596005,   94.21690799,  112.77498692,  111.47025764,
        110.49505125,   82.83999555,  117.4081337 ,  106.65332378,
        120.26950928,  112.28760359,  122.52488644,  129.12083409]))
2016-10-01 18:08:13  main:222                Processing chunk <Chunk (0/91000080), recording 0>...
2016-10-01 18:08:14  progressbar:97          0% complete, 0s elapsed. 76 spikes found.
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2016-10-01 18:08:45  progressbar:97          0% complete, 31s elapsed, 1h 36m 50s remaining. 3658 spikes found.
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2016-10-01 18:09:16  progressbar:97          1% complete, 1m 2s elapsed, 1h 23m 52s remaining. 8060 spikes found.
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2016-10-01 18:09:47  progressbar:97          2% complete, 1m 33s elapsed, 1h 13m 18s remaining. 11154 spikes found.
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2016-10-01 18:10:17  progressbar:97          2% complete, 2m 3s elapsed, 1h 7m 22s remaining. 14821 spikes found.
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2016-10-01 18:10:47  progressbar:97          3% complete, 2m 33s elapsed, 1h 2m 6s remaining. 18327 spikes found.
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2016-10-01 18:11:17  progressbar:97          4% complete, 3m 4s elapsed, 1h 2m 14s remaining. 20841 spikes found.
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2016-10-01 18:11:47  progressbar:97          5% complete, 3m 34s elapsed, 1h 2m 6s remaining. 23100 spikes found.
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2016-10-01 18:12:19  progressbar:97          6% complete, 4m 5s elapsed, 58m 46s remaining. 26656 spikes found.
2016-10-01 18:12:19  main:222                Processing chunk <Chunk (5929700/91000080), recording 0>...
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2016-10-01 18:12:49  progressbar:97          7% complete, 4m 35s elapsed, 55m 44s remaining. 30499 spikes found.
2016-10-01 18:12:49  main:222                Processing chunk <Chunk (6934400/91000080), recording 0>...
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2016-10-01 18:13:19  progressbar:97          8% complete, 5m 6s elapsed, 52m 48s remaining. 34564 spikes found.
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2016-10-01 18:13:50  progressbar:97          10% complete, 5m 36s elapsed, 49m 57s remaining. 38199 spikes found.
2016-10-01 18:13:50  main:222                Processing chunk <Chunk (9180200/91000080), recording 0>...
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2016-10-01 18:14:20  progressbar:97          11% complete, 6m 6s elapsed, 46m 20s remaining. 41308 spikes found.
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2016-10-01 18:14:50  progressbar:97          12% complete, 6m 36s elapsed, 44m 33s remaining. 44859 spikes found.
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2016-10-01 18:29:27  progressbar:97          59% complete, 21m 14s elapsed, 14m 42s remaining. 183330 spikes found.
2016-10-01 18:29:27  main:222                Processing chunk <Chunk (53761300/91000080), recording 0>...
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2016-10-01 18:29:58  progressbar:97          59% complete, 21m 45s elapsed, 14m 40s remaining. 188110 spikes found.
2016-10-01 18:29:58  main:222                Processing chunk <Chunk (54332600/91000080), recording 0>...
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2016-10-01 18:30:29  progressbar:97          60% complete, 22m 15s elapsed, 14m 33s remaining. 193982 spikes found.
2016-10-01 18:30:29  main:222                Processing chunk <Chunk (55022100/91000080), recording 0>...
2016-10-01 18:30:30  main:222                Processing chunk <Chunk (55041800/91000080), recording 0>...
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2016-10-01 18:31:00  progressbar:97          61% complete, 22m 46s elapsed, 14m 25s remaining. 200596 spikes found.
2016-10-01 18:31:00  main:222                Processing chunk <Chunk (55711600/91000080), recording 0>...
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2016-10-01 18:31:31  progressbar:97          61% complete, 23m 17s elapsed, 14m 19s remaining. 207308 spikes found.
2016-10-01 18:31:31  main:222                Processing chunk <Chunk (56361700/91000080), recording 0>...
2016-10-01 18:31:32  main:222                Processing chunk <Chunk (56381400/91000080), recording 0>...
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2016-10-01 18:32:01  progressbar:97          62% complete, 23m 48s elapsed, 14m 10s remaining. 214368 spikes found.
2016-10-01 18:32:01  main:222                Processing chunk <Chunk (57031500/91000080), recording 0>...
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2016-10-01 18:32:32  progressbar:97          63% complete, 24m 18s elapsed, 13m 50s remaining. 221719 spikes found.
2016-10-01 18:32:32  main:222                Processing chunk <Chunk (57977100/91000080), recording 0>...
2016-10-01 18:32:32  main:222                Processing chunk <Chunk (57996800/91000080), recording 0>...
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2016-10-01 18:33:02  progressbar:97          64% complete, 24m 48s elapsed, 13m 38s remaining. 228085 spikes found.
2016-10-01 18:33:02  main:222                Processing chunk <Chunk (58725700/91000080), recording 0>...
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2016-10-01 18:33:32  progressbar:97          65% complete, 25m 18s elapsed, 13m 27s remaining. 234849 spikes found.
2016-10-01 18:33:32  main:222                Processing chunk <Chunk (59415200/91000080), recording 0>...
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2016-10-01 18:34:03  progressbar:97          66% complete, 25m 49s elapsed, 13m 7s remaining. 242332 spikes found.
2016-10-01 18:34:03  main:222                Processing chunk <Chunk (60341100/91000080), recording 0>...
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2016-10-01 18:34:33  progressbar:97          66% complete, 26m 19s elapsed, 13m 2s remaining. 246688 spikes found.
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2016-10-01 18:35:03  progressbar:97          67% complete, 26m 49s elapsed, 12m 51s remaining. 253696 spikes found.
2016-10-01 18:35:03  main:222                Processing chunk <Chunk (61523100/91000080), recording 0>...
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2016-10-01 18:35:34  progressbar:97          68% complete, 27m 20s elapsed, 12m 41s remaining. 260620 spikes found.
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2016-10-01 18:36:04  progressbar:97          69% complete, 27m 50s elapsed, 12m 27s remaining. 267905 spikes found.
2016-10-01 18:36:04  main:222                Processing chunk <Chunk (62862700/91000080), recording 0>...
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2016-10-01 18:36:35  progressbar:97          69% complete, 28m 21s elapsed, 12m 19s remaining. 274749 spikes found.
2016-10-01 18:36:35  main:222                Processing chunk <Chunk (63434000/91000080), recording 0>...
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2016-10-01 18:37:06  progressbar:97          70% complete, 28m 52s elapsed, 12m 11s remaining. 281432 spikes found.
2016-10-01 18:37:06  main:222                Processing chunk <Chunk (63985600/91000080), recording 0>...
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2016-10-01 18:37:36  progressbar:97          70% complete, 29m 22s elapsed, 12m 0s remaining. 288737 spikes found.
2016-10-01 18:37:36  main:222                Processing chunk <Chunk (64596300/91000080), recording 0>...
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2016-10-01 18:38:06  progressbar:97          71% complete, 29m 52s elapsed, 11m 55s remaining. 294712 spikes found.
2016-10-01 18:38:06  main:222                Processing chunk <Chunk (65049400/91000080), recording 0>...
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2016-10-01 18:38:37  progressbar:97          72% complete, 30m 23s elapsed, 11m 43s remaining. 301713 spikes found.
2016-10-01 18:38:37  main:222                Processing chunk <Chunk (65660100/91000080), recording 0>...
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2016-10-01 18:39:07  progressbar:97          72% complete, 30m 54s elapsed, 11m 36s remaining. 307298 spikes found.
2016-10-01 18:39:07  main:222                Processing chunk <Chunk (66152600/91000080), recording 0>...
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2016-10-01 18:39:38  progressbar:97          73% complete, 31m 24s elapsed, 11m 22s remaining. 313761 spikes found.
2016-10-01 18:39:38  main:222                Processing chunk <Chunk (66802700/91000080), recording 0>...
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2016-10-01 18:41:10  progressbar:97          75% complete, 32m 56s elapsed, 10m 48s remaining. 331700 spikes found.
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2016-10-01 18:41:40  progressbar:97          76% complete, 33m 26s elapsed, 10m 29s remaining. 339950 spikes found.
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2016-10-01 18:42:11  progressbar:97          77% complete, 33m 57s elapsed, 10m 4s remaining. 348487 spikes found.
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2016-10-01 18:42:41  progressbar:97          78% complete, 34m 27s elapsed, 9m 38s remaining. 355365 spikes found.
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2016-10-01 18:43:12  progressbar:97          78% complete, 34m 58s elapsed, 9m 24s remaining. 360374 spikes found.
2016-10-01 18:43:12  main:222                Processing chunk <Chunk (71708000/91000080), recording 0>...
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2016-10-01 18:43:42  progressbar:97          79% complete, 35m 29s elapsed, 9m 14s remaining. 364843 spikes found.
2016-10-01 18:43:42  main:222                Processing chunk <Chunk (72200500/91000080), recording 0>...
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2016-10-01 18:44:13  progressbar:97          79% complete, 35m 59s elapsed, 9m 5s remaining. 368724 spikes found.
2016-10-01 18:44:13  main:222                Processing chunk <Chunk (72653600/91000080), recording 0>...
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2016-10-01 18:44:43  progressbar:97          80% complete, 36m 29s elapsed, 8m 51s remaining. 373324 spikes found.
2016-10-01 18:44:43  main:222                Processing chunk <Chunk (73224900/91000080), recording 0>...
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2016-10-01 18:45:14  progressbar:97          81% complete, 37m 0s elapsed, 8m 38s remaining. 377837 spikes found.
2016-10-01 18:45:14  main:222                Processing chunk <Chunk (73776500/91000080), recording 0>...
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2016-10-01 18:45:44  progressbar:97          81% complete, 37m 30s elapsed, 8m 24s remaining. 382162 spikes found.
2016-10-01 18:45:44  main:222                Processing chunk <Chunk (74347800/91000080), recording 0>...
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2016-10-01 18:46:15  progressbar:97          82% complete, 38m 1s elapsed, 8m 7s remaining. 386744 spikes found.
2016-10-01 18:46:15  main:222                Processing chunk <Chunk (74978200/91000080), recording 0>...
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2016-10-01 18:46:45  progressbar:97          83% complete, 38m 32s elapsed, 7m 49s remaining. 391452 spikes found.
2016-10-01 18:46:45  main:222                Processing chunk <Chunk (75628300/91000080), recording 0>...
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2016-10-01 18:47:17  progressbar:97          83% complete, 39m 3s elapsed, 7m 36s remaining. 395978 spikes found.
2016-10-01 18:47:17  main:222                Processing chunk <Chunk (76160200/91000080), recording 0>...
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2016-10-01 18:47:51  progressbar:97          83% complete, 39m 37s elapsed, 7m 33s remaining. 399735 spikes found.
2016-10-01 18:47:51  main:222                Processing chunk <Chunk (76436000/91000080), recording 0>...
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2016-10-01 18:48:22  progressbar:97          84% complete, 40m 8s elapsed, 7m 24s remaining. 403583 spikes found.
2016-10-01 18:48:22  main:222                Processing chunk <Chunk (76810300/91000080), recording 0>...
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2016-10-01 18:48:53  progressbar:97          85% complete, 40m 39s elapsed, 7m 10s remaining. 408268 spikes found.
2016-10-01 18:48:53  main:222                Processing chunk <Chunk (77361900/91000080), recording 0>...
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2016-10-01 18:49:23  progressbar:97          85% complete, 41m 9s elapsed, 6m 55s remaining. 412567 spikes found.
2016-10-01 18:49:23  main:222                Processing chunk <Chunk (77893800/91000080), recording 0>...
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2016-10-01 18:49:54  progressbar:97          86% complete, 41m 40s elapsed, 6m 39s remaining. 417220 spikes found.
2016-10-01 18:49:54  main:222                Processing chunk <Chunk (78465100/91000080), recording 0>...
2016-10-01 18:49:55  main:222                Processing chunk <Chunk (78484800/91000080), recording 0>...
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2016-10-01 18:50:24  progressbar:97          86% complete, 42m 10s elapsed, 6m 24s remaining. 421746 spikes found.
2016-10-01 18:50:24  main:222                Processing chunk <Chunk (78997000/91000080), recording 0>...
2016-10-01 18:50:25  main:222                Processing chunk <Chunk (79016700/91000080), recording 0>...
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2016-10-01 18:50:55  progressbar:97          87% complete, 42m 41s elapsed, 6m 8s remaining. 426302 spikes found.
2016-10-01 18:50:55  main:222                Processing chunk <Chunk (79548600/91000080), recording 0>...
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2016-10-01 18:51:25  progressbar:97          88% complete, 43m 11s elapsed, 5m 50s remaining. 430757 spikes found.
2016-10-01 18:51:25  main:222                Processing chunk <Chunk (80159300/91000080), recording 0>...
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2016-10-01 18:51:56  progressbar:97          88% complete, 43m 42s elapsed, 5m 31s remaining. 435155 spikes found.
2016-10-01 18:51:56  main:222                Processing chunk <Chunk (80789700/91000080), recording 0>...
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2016-10-01 18:52:27  progressbar:97          89% complete, 44m 13s elapsed, 5m 11s remaining. 439600 spikes found.
2016-10-01 18:52:27  main:222                Processing chunk <Chunk (81439800/91000080), recording 0>...
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2016-10-01 18:52:57  progressbar:97          90% complete, 44m 44s elapsed, 4m 49s remaining. 444371 spikes found.
2016-10-01 18:52:57  main:222                Processing chunk <Chunk (82149000/91000080), recording 0>...
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2016-10-01 18:53:28  progressbar:97          91% complete, 45m 14s elapsed, 4m 27s remaining. 449279 spikes found.
2016-10-01 18:53:28  main:222                Processing chunk <Chunk (82838500/91000080), recording 0>...
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2016-10-01 18:53:59  progressbar:97          91% complete, 45m 45s elapsed, 4m 4s remaining. 453968 spikes found.
2016-10-01 18:53:59  main:222                Processing chunk <Chunk (83547700/91000080), recording 0>...
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2016-10-01 18:54:29  progressbar:97          92% complete, 46m 15s elapsed, 3m 39s remaining. 459120 spikes found.
2016-10-01 18:54:29  main:222                Processing chunk <Chunk (84335700/91000080), recording 0>...
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2016-10-01 18:54:59  progressbar:97          93% complete, 46m 46s elapsed, 3m 21s remaining. 463345 spikes found.
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2016-10-01 18:58:03  progressbar:97          99% complete, 49m 49s elapsed, 12s remaining. 485504 spikes found.
2016-10-01 18:58:03  main:222                Processing chunk <Chunk (90620000/91000080), recording 0>...
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2016-10-01 18:58:14  progressbar:97          100% complete, 50m 0s elapsed, 0s remaining. 486836 spikes found.