2016-10-01 17:46:49  main:187                Starting SpikeDetekt version 0.3.0 on <DatRawReader /zpool/tingley/DT5/20160929_0um_0um_merge/20160929_0um_0um_merge.dat>
2016-10-01 17:46:49  main:188                Parameters: 
{'__doc__': 'Contain default parameters.',
 'canonical_pcs': None,
 'chunk_overlap': 300,
 'chunk_size': 20000,
 'connected_component_join_size': 1,
 'detect_spikes': 'negative',
 'diagnostics_path': None,
 'excerpt_size': 20000,
 'experiment_name': '/zpool/tingley/DT5/20160929_0um_0um_merge/3/20160929_0um_0um_merge_sh3',
 'extract_s_after': 16,
 'extract_s_before': 16,
 'features_contiguous': True,
 'filter_butter_order': 3,
 'filter_high': 9500.0,
 'filter_low': 500.0,
 'nbits': 16,
 'nchannels': 96,
 'nexcerpts': 60,
 'nfeatures_per_channel': 6,
 'pca_nwaveforms_max': 20000,
 'prb_file': '3.prb',
 'raw_data_files': ['/zpool/tingley/DT5/20160929_0um_0um_merge/20160929_0um_0um_merge.dat'],
 'sample_rate': 20000.0,
 'save_high': False,
 'save_low': False,
 'save_raw': False,
 'threshold_strong_std_factor': 4.5,
 'threshold_weak_std_factor': 2.0,
 'use_single_threshold': False,
 'voltage_gain': 10.0,
 'waveforms_nsamples': 32,
 'weight_power': 2}
2016-10-01 17:47:39  main:200                Threshold: DoubleThreshold(strong=array([ 296.19257476,  299.44593262,  310.53619631,  298.47518459,
        302.22349129,  305.64647198,  300.92584924,  290.32411886,
        283.73467425,  294.1117754 ,  298.36977208,  299.98470196,
        286.18672245,  291.47486653,  278.05932964,  285.00463414,
        303.77280278,  288.40218293,  293.43711579,  300.91318944,
        301.11948479,  301.64231704,  274.66985581,  292.65676142,
        306.96940994,  312.85245971,  293.79751467,  308.63873688,
        299.42483394,  306.07557926,  273.34954322,  246.57812029,
        218.9879471 ,  213.71741454,  210.86634788,  184.5600158 ,
        212.70232644,  196.83583471,  198.62654789,  215.86945303,
        202.42588916,  202.49510911,  204.79127049,  215.93399934,
        213.27025472,  210.8883433 ,  204.09456665,  213.18787187,
        293.83971643,  296.54217409,  281.67103791,  282.22120301,
        279.56840831,  279.51773525,  275.34640643,  272.63644792,
        278.93012344,  273.93849388,  260.6147316 ,  272.87966007,
        206.16854872,  203.01846419,  200.06617596,  202.38566085,
        262.42827296,  272.34770979,  272.92324371,  269.53741413,
        329.53415687,  337.25402649,  336.78163685,  329.7727957 ,
        337.53801561,  336.52334182,  334.88713521,  344.77243927,
        329.06419751,  333.22517632,  353.46451537,  335.97945405,
        205.08248318,  218.36222127,  205.0421734 ,  205.91360725,
        207.66591011,  211.98804298,  253.74372056,  250.80807968,
        248.61386531,  186.38998999,  264.16830083,  239.9699785 ,
        270.60639587,  252.64710807,  275.68099448,  290.52187669]), weak=array([ 131.64114434,  133.08708117,  138.01608725,  132.65563759,
        134.32155169,  135.84287644,  133.74482189,  129.03294172,
        126.10429966,  130.71634462,  132.60878759,  133.3265342 ,
        127.19409887,  129.54438513,  123.58192428,  126.66872628,
        135.01013457,  128.17874797,  130.41649591,  133.73919531,
        133.83088213,  134.06325202,  122.07549147,  130.06967174,
        136.43084886,  139.04553765,  130.57667319,  137.17277195,
        133.07770397,  136.03359078,  121.48868587,  109.59027569,
         97.32797649,   94.98551757,   93.71837684,   82.02667369,
         94.53436731,   87.48259321,   88.27846573,   95.94197912,
         89.96706185,   89.99782627,   91.01834244,   95.97066638,
         94.78677988,   93.72815258,   90.70869629,   94.75016527,
        130.59542952,  131.79652182,  125.18712796,  125.43164578,
        124.25262592,  124.23010455,  122.37618063,  121.17175463,
        123.96894375,  121.75044173,  115.8287696 ,  121.27984892,
         91.6304661 ,   90.23042853,   88.91830043,   89.9491826 ,
        116.63478798,  121.04342657,  121.29921943,  119.79440628,
        146.45962528,  149.89067844,  149.68072749,  146.56568698,
        150.01689583,  149.5659297 ,  148.83872676,  153.23219523,
        146.25075445,  148.10007836,  157.09534016,  149.3242018 ,
         91.1477703 ,   97.04987612,   91.12985484,   91.51715878,
         92.29596005,   94.21690799,  112.77498692,  111.47025764,
        110.49505125,   82.83999555,  117.4081337 ,  106.65332378,
        120.26950928,  112.28760359,  122.52488644,  129.12083409]))
2016-10-01 17:47:39  main:222                Processing chunk <Chunk (0/91000080), recording 0>...
2016-10-01 17:47:40  progressbar:97          0% complete, 0s elapsed. 129 spikes found.
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2016-10-01 17:48:10  progressbar:97          0% complete, 30s elapsed, 1h 9m 38s remaining. 6583 spikes found.
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2016-10-01 17:48:40  progressbar:97          1% complete, 1m 1s elapsed, 56m 43s remaining. 12891 spikes found.
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2016-10-01 17:49:11  progressbar:97          2% complete, 1m 32s elapsed, 54m 2s remaining. 18747 spikes found.
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2016-10-01 17:49:42  progressbar:97          3% complete, 2m 2s elapsed, 50m 11s remaining. 25426 spikes found.
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2016-10-01 17:50:12  progressbar:97          5% complete, 2m 33s elapsed, 47m 36s remaining. 31525 spikes found.
2016-10-01 17:50:12  main:222                Processing chunk <Chunk (4629500/91000080), recording 0>...
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2016-10-01 17:50:42  progressbar:97          6% complete, 3m 3s elapsed, 45m 37s remaining. 37613 spikes found.
2016-10-01 17:50:42  main:222                Processing chunk <Chunk (5713000/91000080), recording 0>...
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2016-10-01 17:51:12  progressbar:97          7% complete, 3m 33s elapsed, 45m 38s remaining. 42708 spikes found.
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2016-10-01 17:51:43  progressbar:97          8% complete, 4m 3s elapsed, 44m 27s remaining. 48167 spikes found.
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2016-10-01 18:02:48  progressbar:97          37% complete, 15m 8s elapsed, 25m 33s remaining. 154656 spikes found.
2016-10-01 18:02:48  main:222                Processing chunk <Chunk (33864300/91000080), recording 0>...
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2016-10-01 18:04:19  progressbar:97          40% complete, 16m 40s elapsed, 24m 20s remaining. 169124 spikes found.
2016-10-01 18:04:19  main:222                Processing chunk <Chunk (36996600/91000080), recording 0>...
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2016-10-01 18:04:50  progressbar:97          41% complete, 17m 10s elapsed, 24m 2s remaining. 174849 spikes found.
2016-10-01 18:04:50  main:222                Processing chunk <Chunk (37922500/91000080), recording 0>...
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2016-10-01 18:05:21  progressbar:97          42% complete, 17m 41s elapsed, 23m 59s remaining. 179188 spikes found.
2016-10-01 18:05:21  main:222                Processing chunk <Chunk (38631700/91000080), recording 0>...
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2016-10-01 18:05:51  progressbar:97          43% complete, 18m 12s elapsed, 23m 57s remaining. 183825 spikes found.
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2016-10-01 18:06:23  progressbar:97          43% complete, 18m 44s elapsed, 23m 58s remaining. 188003 spikes found.
2016-10-01 18:06:23  main:222                Processing chunk <Chunk (39931900/91000080), recording 0>...
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2016-10-01 18:06:54  progressbar:97          44% complete, 19m 14s elapsed, 23m 56s remaining. 191636 spikes found.
2016-10-01 18:06:54  main:222                Processing chunk <Chunk (40562300/91000080), recording 0>...
2016-10-01 18:06:54  main:222                Processing chunk <Chunk (40582000/91000080), recording 0>...
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2016-10-01 18:07:26  progressbar:97          45% complete, 19m 46s elapsed, 24m 7s remaining. 194492 spikes found.
2016-10-01 18:07:26  main:222                Processing chunk <Chunk (40995700/91000080), recording 0>...
2016-10-01 18:07:30  main:222                Processing chunk <Chunk (41015400/91000080), recording 0>...
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2016-10-01 18:07:57  progressbar:97          45% complete, 20m 18s elapsed, 24m 22s remaining. 196451 spikes found.
2016-10-01 18:07:57  main:222                Processing chunk <Chunk (41350300/91000080), recording 0>...
2016-10-01 18:07:58  main:222                Processing chunk <Chunk (41370000/91000080), recording 0>...
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2016-10-01 18:08:27  main:222                Processing chunk <Chunk (41921600/91000080), recording 0>...
2016-10-01 18:08:27  progressbar:97          46% complete, 20m 48s elapsed, 24m 20s remaining. 199471 spikes found.
2016-10-01 18:08:27  main:222                Processing chunk <Chunk (41941300/91000080), recording 0>...
2016-10-01 18:08:28  main:222                Processing chunk <Chunk (41961000/91000080), recording 0>...
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2016-10-01 18:08:55  main:222                Processing chunk <Chunk (42591400/91000080), recording 0>...
2016-10-01 18:08:58  progressbar:97          46% complete, 21m 19s elapsed, 24m 13s remaining. 203171 spikes found.
2016-10-01 18:08:58  main:222                Processing chunk <Chunk (42611100/91000080), recording 0>...
2016-10-01 18:08:59  main:222                Processing chunk <Chunk (42630800/91000080), recording 0>...
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2016-10-01 18:09:28  main:222                Processing chunk <Chunk (43399100/91000080), recording 0>...
2016-10-01 18:09:28  progressbar:97          47% complete, 21m 49s elapsed, 23m 55s remaining. 207048 spikes found.
2016-10-01 18:09:28  main:222                Processing chunk <Chunk (43418800/91000080), recording 0>...
2016-10-01 18:09:29  main:222                Processing chunk <Chunk (43438500/91000080), recording 0>...
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2016-10-01 18:09:59  progressbar:97          48% complete, 22m 19s elapsed, 23m 33s remaining. 210644 spikes found.
2016-10-01 18:09:59  main:222                Processing chunk <Chunk (44285600/91000080), recording 0>...
2016-10-01 18:10:01  main:222                Processing chunk <Chunk (44305300/91000080), recording 0>...
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2016-10-01 18:10:31  main:222                Processing chunk <Chunk (45231200/91000080), recording 0>...
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2016-10-01 18:11:01  progressbar:97          50% complete, 23m 22s elapsed, 22m 43s remaining. 218995 spikes found.
2016-10-01 18:11:01  main:222                Processing chunk <Chunk (46137400/91000080), recording 0>...
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2016-10-01 18:11:33  progressbar:97          51% complete, 23m 54s elapsed, 22m 26s remaining. 222367 spikes found.
2016-10-01 18:11:33  main:222                Processing chunk <Chunk (46945100/91000080), recording 0>...
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2016-10-01 18:12:03  progressbar:97          52% complete, 24m 24s elapsed, 22m 7s remaining. 226211 spikes found.
2016-10-01 18:12:03  main:222                Processing chunk <Chunk (47733100/91000080), recording 0>...
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2016-10-01 18:12:33  progressbar:97          53% complete, 24m 54s elapsed, 21m 39s remaining. 231458 spikes found.
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2016-10-01 18:14:35  progressbar:97          57% complete, 26m 55s elapsed, 19m 53s remaining. 255087 spikes found.
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2016-10-01 18:15:36  progressbar:97          59% complete, 27m 57s elapsed, 19m 11s remaining. 268150 spikes found.
2016-10-01 18:15:36  main:222                Processing chunk <Chunk (53958300/91000080), recording 0>...
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2016-10-01 18:16:07  progressbar:97          59% complete, 28m 28s elapsed, 19m 0s remaining. 274377 spikes found.
2016-10-01 18:16:07  main:222                Processing chunk <Chunk (54569000/91000080), recording 0>...
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2016-10-01 18:16:38  progressbar:97          60% complete, 28m 58s elapsed, 18m 43s remaining. 281396 spikes found.
2016-10-01 18:16:38  main:222                Processing chunk <Chunk (55278200/91000080), recording 0>...
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2016-10-01 18:17:09  progressbar:97          61% complete, 29m 29s elapsed, 18m 37s remaining. 287842 spikes found.
2016-10-01 18:17:09  main:222                Processing chunk <Chunk (55790400/91000080), recording 0>...
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2016-10-01 18:17:40  progressbar:97          61% complete, 30m 1s elapsed, 18m 26s remaining. 294956 spikes found.
2016-10-01 18:17:40  main:222                Processing chunk <Chunk (56381400/91000080), recording 0>...
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2016-10-01 18:18:10  progressbar:97          62% complete, 30m 31s elapsed, 18m 13s remaining. 302214 spikes found.
2016-10-01 18:18:10  main:222                Processing chunk <Chunk (56972400/91000080), recording 0>...
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2016-10-01 18:18:41  progressbar:97          63% complete, 31m 1s elapsed, 17m 55s remaining. 309707 spikes found.
2016-10-01 18:18:41  main:222                Processing chunk <Chunk (57681600/91000080), recording 0>...
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2016-10-01 18:19:11  progressbar:97          64% complete, 31m 32s elapsed, 17m 33s remaining. 316894 spikes found.
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2016-10-01 18:19:41  progressbar:97          64% complete, 32m 2s elapsed, 17m 23s remaining. 323672 spikes found.
2016-10-01 18:19:41  main:222                Processing chunk <Chunk (58981800/91000080), recording 0>...
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2016-10-01 18:20:12  progressbar:97          65% complete, 32m 33s elapsed, 16m 59s remaining. 330856 spikes found.
2016-10-01 18:20:12  main:222                Processing chunk <Chunk (59789500/91000080), recording 0>...
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2016-10-01 18:20:42  progressbar:97          66% complete, 33m 3s elapsed, 16m 40s remaining. 338236 spikes found.
2016-10-01 18:20:42  main:222                Processing chunk <Chunk (60479000/91000080), recording 0>...
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2016-10-01 18:21:12  progressbar:97          67% complete, 33m 33s elapsed, 16m 20s remaining. 345329 spikes found.
2016-10-01 18:21:12  main:222                Processing chunk <Chunk (61207900/91000080), recording 0>...
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2016-10-01 18:21:43  progressbar:97          67% complete, 34m 4s elapsed, 16m 4s remaining. 352984 spikes found.
2016-10-01 18:21:43  main:222                Processing chunk <Chunk (61818600/91000080), recording 0>...
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2016-10-01 18:22:14  progressbar:97          68% complete, 34m 34s elapsed, 15m 46s remaining. 360733 spikes found.
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2016-10-01 18:22:44  progressbar:97          69% complete, 35m 5s elapsed, 15m 29s remaining. 368554 spikes found.
2016-10-01 18:22:44  main:222                Processing chunk <Chunk (63138500/91000080), recording 0>...
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2016-10-01 18:23:15  progressbar:97          69% complete, 35m 36s elapsed, 15m 16s remaining. 375804 spikes found.
2016-10-01 18:23:15  main:222                Processing chunk <Chunk (63670400/91000080), recording 0>...
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2016-10-01 18:23:45  progressbar:97          70% complete, 36m 6s elapsed, 15m 1s remaining. 383558 spikes found.
2016-10-01 18:23:45  main:222                Processing chunk <Chunk (64261400/91000080), recording 0>...
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2016-10-01 18:24:16  progressbar:97          71% complete, 36m 36s elapsed, 14m 44s remaining. 391129 spikes found.
2016-10-01 18:24:16  main:222                Processing chunk <Chunk (64872100/91000080), recording 0>...
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2016-10-01 18:24:46  progressbar:97          71% complete, 37m 6s elapsed, 14m 27s remaining. 398513 spikes found.
2016-10-01 18:24:46  main:222                Processing chunk <Chunk (65482800/91000080), recording 0>...
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2016-10-01 18:25:16  progressbar:97          72% complete, 37m 37s elapsed, 14m 10s remaining. 405956 spikes found.
2016-10-01 18:25:16  main:222                Processing chunk <Chunk (66093500/91000080), recording 0>...
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2016-10-01 18:25:48  progressbar:97          73% complete, 38m 8s elapsed, 13m 51s remaining. 412668 spikes found.
2016-10-01 18:25:48  main:222                Processing chunk <Chunk (66743600/91000080), recording 0>...
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2016-10-01 18:26:49  progressbar:97          74% complete, 39m 10s elapsed, 13m 16s remaining. 426880 spikes found.
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2016-10-01 18:27:20  progressbar:97          75% complete, 39m 40s elapsed, 12m 52s remaining. 434792 spikes found.
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2016-10-01 18:27:50  progressbar:97          76% complete, 40m 10s elapsed, 12m 27s remaining. 442776 spikes found.
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2016-10-01 18:28:20  progressbar:97          77% complete, 40m 41s elapsed, 12m 1s remaining. 450532 spikes found.
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2016-10-01 18:28:50  progressbar:97          78% complete, 41m 11s elapsed, 11m 29s remaining. 457493 spikes found.
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2016-10-01 18:30:53  progressbar:97          81% complete, 43m 14s elapsed, 9m 41s remaining. 486658 spikes found.
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2016-10-01 18:31:24  progressbar:97          82% complete, 43m 44s elapsed, 9m 4s remaining. 493847 spikes found.
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2016-10-01 18:31:55  progressbar:97          83% complete, 44m 16s elapsed, 8m 34s remaining. 501351 spikes found.
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2016-10-01 18:32:25  progressbar:97          84% complete, 44m 46s elapsed, 8m 16s remaining. 507829 spikes found.
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2016-10-01 18:32:55  progressbar:97          85% complete, 45m 16s elapsed, 7m 46s remaining. 515129 spikes found.
2016-10-01 18:32:55  main:222                Processing chunk <Chunk (77657400/91000080), recording 0>...
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2016-10-01 18:33:26  progressbar:97          86% complete, 45m 47s elapsed, 7m 16s remaining. 522104 spikes found.
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2016-10-01 18:33:56  progressbar:97          87% complete, 46m 17s elapsed, 6m 46s remaining. 529788 spikes found.
2016-10-01 18:33:56  main:222                Processing chunk <Chunk (79371300/91000080), recording 0>...
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2016-10-01 18:34:29  progressbar:97          88% complete, 46m 49s elapsed, 6m 20s remaining. 535866 spikes found.
2016-10-01 18:34:29  main:222                Processing chunk <Chunk (80139600/91000080), recording 0>...
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2016-10-01 18:35:29  progressbar:97          90% complete, 47m 50s elapsed, 5m 9s remaining. 550462 spikes found.
2016-10-01 18:35:29  main:222                Processing chunk <Chunk (82149000/91000080), recording 0>...
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2016-10-01 18:35:59  progressbar:97          91% complete, 48m 20s elapsed, 4m 32s remaining. 557519 spikes found.
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2016-10-01 18:36:30  progressbar:97          92% complete, 48m 50s elapsed, 3m 56s remaining. 564327 spikes found.
2016-10-01 18:36:30  main:222                Processing chunk <Chunk (84197800/91000080), recording 0>...
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2016-10-01 18:37:00  progressbar:97          93% complete, 49m 21s elapsed, 3m 29s remaining. 572231 spikes found.
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2016-10-01 18:37:31  progressbar:97          94% complete, 49m 52s elapsed, 3m 2s remaining. 579330 spikes found.
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2016-10-01 18:38:02  progressbar:97          94% complete, 50m 22s elapsed, 2m 40s remaining. 586082 spikes found.
2016-10-01 18:38:02  main:222                Processing chunk <Chunk (86423900/91000080), recording 0>...
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2016-10-01 18:38:32  progressbar:97          95% complete, 50m 53s elapsed, 2m 14s remaining. 593909 spikes found.
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2016-10-01 18:39:02  progressbar:97          97% complete, 51m 23s elapsed, 1m 24s remaining. 596317 spikes found.
2016-10-01 18:39:02  main:222                Processing chunk <Chunk (88571200/91000080), recording 0>...
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2016-10-01 18:39:32  progressbar:97          98% complete, 51m 53s elapsed, 46s remaining. 600141 spikes found.
2016-10-01 18:39:32  main:222                Processing chunk <Chunk (89674400/91000080), recording 0>...
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2016-10-01 18:40:03  progressbar:97          99% complete, 52m 23s elapsed, 10s remaining. 604553 spikes found.
2016-10-01 18:40:03  main:222                Processing chunk <Chunk (90698800/91000080), recording 0>...
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2016-10-01 18:40:11  progressbar:97          100% complete, 52m 31s elapsed, 0s remaining. 606026 spikes found.