2016-09-30 12:44:33  main:187                Starting SpikeDetekt version 0.3.0 on <DatRawReader /zpool/tingley/DT5/20160929_0um_0um_merge/20160929_0um_0um_merge.dat>
2016-09-30 12:44:33  main:188                Parameters: 
{'__doc__': 'Contain default parameters.',
 'canonical_pcs': None,
 'chunk_overlap': 300,
 'chunk_size': 20000,
 'connected_component_join_size': 1,
 'detect_spikes': 'negative',
 'diagnostics_path': None,
 'excerpt_size': 20000,
 'experiment_name': '/zpool/tingley/DT5/20160929_0um_0um_merge/7/20160929_0um_0um_merge_sh7',
 'extract_s_after': 16,
 'extract_s_before': 16,
 'features_contiguous': True,
 'filter_butter_order': 3,
 'filter_high': 9500.0,
 'filter_low': 500.0,
 'nbits': 16,
 'nchannels': 96,
 'nexcerpts': 60,
 'nfeatures_per_channel': 6,
 'pca_nwaveforms_max': 20000,
 'prb_file': '7.prb',
 'raw_data_files': ['/zpool/tingley/DT5/20160929_0um_0um_merge/20160929_0um_0um_merge.dat'],
 'sample_rate': 20000.0,
 'save_high': False,
 'save_low': False,
 'save_raw': False,
 'threshold_strong_std_factor': 4.5,
 'threshold_weak_std_factor': 2.0,
 'use_single_threshold': False,
 'voltage_gain': 10.0,
 'waveforms_nsamples': 32,
 'weight_power': 2}
2016-09-30 12:45:33  main:200                Threshold: DoubleThreshold(strong=array([ 296.19257476,  299.44593262,  310.53619631,  298.47518459,
        302.22349129,  305.64647198,  300.92584924,  290.32411886,
        283.73467425,  294.1117754 ,  298.36977208,  299.98470196,
        286.18672245,  291.47486653,  278.05932964,  285.00463414,
        303.77280278,  288.40218293,  293.43711579,  300.91318944,
        301.11948479,  301.64231704,  274.66985581,  292.65676142,
        306.96940994,  312.85245971,  293.79751467,  308.63873688,
        299.42483394,  306.07557926,  273.34954322,  246.57812029,
        218.9879471 ,  213.71741454,  210.86634788,  184.5600158 ,
        212.70232644,  196.83583471,  198.62654789,  215.86945303,
        202.42588916,  202.49510911,  204.79127049,  215.93399934,
        213.27025472,  210.8883433 ,  204.09456665,  213.18787187,
        293.83971643,  296.54217409,  281.67103791,  282.22120301,
        279.56840831,  279.51773525,  275.34640643,  272.63644792,
        278.93012344,  273.93849388,  260.6147316 ,  272.87966007,
        206.16854872,  203.01846419,  200.06617596,  202.38566085,
        262.42827296,  272.34770979,  272.92324371,  269.53741413,
        329.53415687,  337.25402649,  336.78163685,  329.7727957 ,
        337.53801561,  336.52334182,  334.88713521,  344.77243927,
        329.06419751,  333.22517632,  353.46451537,  335.97945405,
        205.08248318,  218.36222127,  205.0421734 ,  205.91360725,
        207.66591011,  211.98804298,  253.74372056,  250.80807968,
        248.61386531,  186.38998999,  264.16830083,  239.9699785 ,
        270.60639587,  252.64710807,  275.68099448,  290.52187669]), weak=array([ 131.64114434,  133.08708117,  138.01608725,  132.65563759,
        134.32155169,  135.84287644,  133.74482189,  129.03294172,
        126.10429966,  130.71634462,  132.60878759,  133.3265342 ,
        127.19409887,  129.54438513,  123.58192428,  126.66872628,
        135.01013457,  128.17874797,  130.41649591,  133.73919531,
        133.83088213,  134.06325202,  122.07549147,  130.06967174,
        136.43084886,  139.04553765,  130.57667319,  137.17277195,
        133.07770397,  136.03359078,  121.48868587,  109.59027569,
         97.32797649,   94.98551757,   93.71837684,   82.02667369,
         94.53436731,   87.48259321,   88.27846573,   95.94197912,
         89.96706185,   89.99782627,   91.01834244,   95.97066638,
         94.78677988,   93.72815258,   90.70869629,   94.75016527,
        130.59542952,  131.79652182,  125.18712796,  125.43164578,
        124.25262592,  124.23010455,  122.37618063,  121.17175463,
        123.96894375,  121.75044173,  115.8287696 ,  121.27984892,
         91.6304661 ,   90.23042853,   88.91830043,   89.9491826 ,
        116.63478798,  121.04342657,  121.29921943,  119.79440628,
        146.45962528,  149.89067844,  149.68072749,  146.56568698,
        150.01689583,  149.5659297 ,  148.83872676,  153.23219523,
        146.25075445,  148.10007836,  157.09534016,  149.3242018 ,
         91.1477703 ,   97.04987612,   91.12985484,   91.51715878,
         92.29596005,   94.21690799,  112.77498692,  111.47025764,
        110.49505125,   82.83999555,  117.4081337 ,  106.65332378,
        120.26950928,  112.28760359,  122.52488644,  129.12083409]))
2016-09-30 12:45:33  main:222                Processing chunk <Chunk (0/91000080), recording 0>...
2016-09-30 12:45:33  progressbar:97          0% complete, 0s elapsed. 25 spikes found.
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2016-09-30 12:46:04  progressbar:97          0% complete, 31s elapsed, 1h 16m 30s remaining. 3759 spikes found.
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2016-09-30 12:46:34  progressbar:97          1% complete, 1m 1s elapsed, 1h 6m 22s remaining. 6694 spikes found.
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2016-09-30 12:47:05  progressbar:97          2% complete, 1m 31s elapsed, 58m 27s remaining. 9018 spikes found.
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2016-09-30 12:47:35  progressbar:97          3% complete, 2m 2s elapsed, 55m 37s remaining. 12047 spikes found.
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2016-09-30 12:49:05  progressbar:97          6% complete, 3m 32s elapsed, 48m 8s remaining. 19332 spikes found.
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2016-09-30 12:50:06  progressbar:97          9% complete, 4m 33s elapsed, 44m 58s remaining. 23521 spikes found.
2016-09-30 12:50:06  main:222                Processing chunk <Chunk (8372500/91000080), recording 0>...
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2016-09-30 12:50:36  progressbar:97          10% complete, 5m 3s elapsed, 44m 1s remaining. 25561 spikes found.
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2016-09-30 12:51:06  progressbar:97          11% complete, 5m 33s elapsed, 42m 44s remaining. 27206 spikes found.
2016-09-30 12:51:06  main:222                Processing chunk <Chunk (10480400/91000080), recording 0>...
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2016-09-30 12:51:37  progressbar:97          12% complete, 6m 4s elapsed, 42m 32s remaining. 29538 spikes found.
2016-09-30 12:51:37  main:222                Processing chunk <Chunk (11366900/91000080), recording 0>...
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2016-09-30 12:53:07  progressbar:97          16% complete, 7m 34s elapsed, 38m 11s remaining. 34417 spikes found.
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2016-09-30 12:53:38  progressbar:97          17% complete, 8m 5s elapsed, 37m 17s remaining. 36444 spikes found.
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2016-09-30 12:55:39  progressbar:97          23% complete, 10m 6s elapsed, 33m 47s remaining. 42356 spikes found.
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2016-09-30 12:59:16  progressbar:97          32% complete, 13m 43s elapsed, 28m 59s remaining. 54160 spikes found.
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2016-09-30 12:59:46  progressbar:97          33% complete, 14m 13s elapsed, 28m 19s remaining. 55616 spikes found.
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2016-09-30 13:02:17  progressbar:97          39% complete, 16m 44s elapsed, 25m 48s remaining. 63130 spikes found.
2016-09-30 13:02:17  main:222                Processing chunk <Chunk (35794900/91000080), recording 0>...
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2016-09-30 13:02:47  progressbar:97          40% complete, 17m 14s elapsed, 25m 30s remaining. 64662 spikes found.
2016-09-30 13:02:47  main:222                Processing chunk <Chunk (36701100/91000080), recording 0>...
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2016-09-30 13:03:18  progressbar:97          41% complete, 17m 44s elapsed, 25m 20s remaining. 66896 spikes found.
2016-09-30 13:03:18  main:222                Processing chunk <Chunk (37489100/91000080), recording 0>...
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2016-09-30 13:03:48  progressbar:97          42% complete, 18m 15s elapsed, 25m 1s remaining. 68817 spikes found.
2016-09-30 13:03:48  main:222                Processing chunk <Chunk (38395300/91000080), recording 0>...
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2016-09-30 13:04:19  progressbar:97          42% complete, 18m 46s elapsed, 25m 7s remaining. 72036 spikes found.
2016-09-30 13:04:19  main:222                Processing chunk <Chunk (38907500/91000080), recording 0>...
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2016-09-30 13:04:49  progressbar:97          43% complete, 19m 16s elapsed, 25m 1s remaining. 74073 spikes found.
2016-09-30 13:04:49  main:222                Processing chunk <Chunk (39597000/91000080), recording 0>...
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2016-09-30 13:06:20  progressbar:97          46% complete, 20m 47s elapsed, 24m 13s remaining. 80263 spikes found.
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2016-09-30 13:06:50  progressbar:97          47% complete, 21m 17s elapsed, 23m 53s remaining. 82406 spikes found.
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2016-09-30 13:11:55  progressbar:97          58% complete, 26m 22s elapsed, 18m 26s remaining. 99673 spikes found.
2016-09-30 13:11:55  main:222                Processing chunk <Chunk (53564300/91000080), recording 0>...
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2016-09-30 13:12:27  progressbar:97          59% complete, 26m 54s elapsed, 18m 23s remaining. 103034 spikes found.
2016-09-30 13:12:27  main:222                Processing chunk <Chunk (54056800/91000080), recording 0>...
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2016-09-30 13:12:57  progressbar:97          59% complete, 27m 24s elapsed, 18m 19s remaining. 106182 spikes found.
2016-09-30 13:12:57  main:222                Processing chunk <Chunk (54529600/91000080), recording 0>...
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2016-09-30 13:13:27  progressbar:97          60% complete, 27m 54s elapsed, 18m 11s remaining. 109178 spikes found.
2016-09-30 13:13:27  main:222                Processing chunk <Chunk (55100900/91000080), recording 0>...
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2016-09-30 13:13:57  progressbar:97          61% complete, 28m 24s elapsed, 18m 1s remaining. 112068 spikes found.
2016-09-30 13:13:57  main:222                Processing chunk <Chunk (55672200/91000080), recording 0>...
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2016-09-30 13:14:28  progressbar:97          61% complete, 28m 54s elapsed, 17m 57s remaining. 115267 spikes found.
2016-09-30 13:14:28  main:222                Processing chunk <Chunk (56145000/91000080), recording 0>...
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2016-09-30 13:14:58  progressbar:97          62% complete, 29m 25s elapsed, 17m 49s remaining. 118543 spikes found.
2016-09-30 13:14:58  main:222                Processing chunk <Chunk (56657200/91000080), recording 0>...
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2016-09-30 13:15:28  progressbar:97          63% complete, 29m 55s elapsed, 17m 20s remaining. 120420 spikes found.
2016-09-30 13:15:28  main:222                Processing chunk <Chunk (57602800/91000080), recording 0>...
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2016-09-30 13:15:59  progressbar:97          64% complete, 30m 26s elapsed, 16m 51s remaining. 122432 spikes found.
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2016-09-30 13:16:29  progressbar:97          64% complete, 30m 56s elapsed, 16m 41s remaining. 125814 spikes found.
2016-09-30 13:16:29  main:222                Processing chunk <Chunk (59100000/91000080), recording 0>...
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2016-09-30 13:17:00  progressbar:97          66% complete, 31m 27s elapsed, 16m 10s remaining. 128197 spikes found.
2016-09-30 13:17:00  main:222                Processing chunk <Chunk (60085000/91000080), recording 0>...
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2016-09-30 13:17:30  progressbar:97          66% complete, 31m 57s elapsed, 15m 45s remaining. 130749 spikes found.
2016-09-30 13:17:30  main:222                Processing chunk <Chunk (60951800/91000080), recording 0>...
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2016-09-30 13:18:01  progressbar:97          67% complete, 32m 28s elapsed, 15m 29s remaining. 134004 spikes found.
2016-09-30 13:18:01  main:222                Processing chunk <Chunk (61601900/91000080), recording 0>...
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2016-09-30 13:18:31  progressbar:97          68% complete, 32m 58s elapsed, 15m 18s remaining. 137345 spikes found.
2016-09-30 13:18:31  main:222                Processing chunk <Chunk (62153500/91000080), recording 0>...
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2016-09-30 13:19:01  progressbar:97          68% complete, 33m 28s elapsed, 15m 4s remaining. 140620 spikes found.
2016-09-30 13:19:01  main:222                Processing chunk <Chunk (62744500/91000080), recording 0>...
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2016-09-30 13:19:33  progressbar:97          69% complete, 34m 0s elapsed, 14m 51s remaining. 144334 spikes found.
2016-09-30 13:19:33  main:222                Processing chunk <Chunk (63335500/91000080), recording 0>...
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2016-09-30 13:20:04  progressbar:97          70% complete, 34m 31s elapsed, 14m 39s remaining. 147780 spikes found.
2016-09-30 13:20:04  main:222                Processing chunk <Chunk (63887100/91000080), recording 0>...
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2016-09-30 13:20:35  progressbar:97          70% complete, 35m 2s elapsed, 14m 28s remaining. 151293 spikes found.
2016-09-30 13:20:35  main:222                Processing chunk <Chunk (64399300/91000080), recording 0>...
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2016-09-30 13:21:06  progressbar:97          71% complete, 35m 33s elapsed, 14m 17s remaining. 154959 spikes found.
2016-09-30 13:21:06  main:222                Processing chunk <Chunk (64911500/91000080), recording 0>...
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2016-09-30 13:21:36  progressbar:97          72% complete, 36m 3s elapsed, 14m 0s remaining. 158452 spikes found.
2016-09-30 13:21:36  main:222                Processing chunk <Chunk (65541900/91000080), recording 0>...
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2016-09-30 13:22:08  progressbar:97          72% complete, 36m 35s elapsed, 13m 48s remaining. 161964 spikes found.
2016-09-30 13:22:08  main:222                Processing chunk <Chunk (66073800/91000080), recording 0>...
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2016-09-30 13:22:38  progressbar:97          73% complete, 37m 5s elapsed, 13m 28s remaining. 165045 spikes found.
2016-09-30 13:22:38  main:222                Processing chunk <Chunk (66743600/91000080), recording 0>...
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2016-09-30 13:23:41  progressbar:97          74% complete, 38m 8s elapsed, 12m 57s remaining. 172185 spikes found.
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2016-09-30 13:24:12  progressbar:97          75% complete, 38m 39s elapsed, 12m 33s remaining. 175202 spikes found.
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2016-09-30 13:24:42  progressbar:97          76% complete, 39m 9s elapsed, 12m 11s remaining. 178068 spikes found.
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2016-09-30 13:25:12  progressbar:97          77% complete, 39m 39s elapsed, 11m 44s remaining. 180460 spikes found.
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2016-09-30 13:25:43  progressbar:97          78% complete, 40m 10s elapsed, 11m 6s remaining. 182390 spikes found.
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2016-09-30 13:32:48  progressbar:97          93% complete, 47m 15s elapsed, 3m 30s remaining. 207420 spikes found.
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2016-09-30 13:35:19  progressbar:97          99% complete, 49m 46s elapsed, 0s remaining. 211292 spikes found.
2016-09-30 13:35:19  main:222                Processing chunk <Chunk (90994300/91000080), recording 0>...
2016-09-30 13:35:20  progressbar:97          100% complete, 49m 46s elapsed, 0s remaining. 211292 spikes found.