2017-01-15 19:53:12  main:187                Starting SpikeDetekt version 0.3.0 on <DatRawReader /mnt/packrat/userdirs/david/zpool1/DT6/20170115_216um_432um_170115_180451/20170115_216um_432um_170115_180451.dat>
2017-01-15 19:53:12  main:188                Parameters: 
{'__doc__': 'Contain default parameters.',
 'canonical_pcs': None,
 'chunk_overlap': 300,
 'chunk_size': 20000,
 'connected_component_join_size': 1,
 'detect_spikes': 'negative',
 'diagnostics_path': None,
 'excerpt_size': 20000,
 'experiment_name': '/mnt/packrat/userdirs/david/zpool1/DT6/20170115_216um_432um_170115_180451/3/20170115_216um_432um_170115_180451_sh3',
 'extract_s_after': 16,
 'extract_s_before': 16,
 'features_contiguous': True,
 'filter_butter_order': 3,
 'filter_high': 9500.0,
 'filter_low': 500.0,
 'nbits': 16,
 'nchannels': 96,
 'nexcerpts': 60,
 'nfeatures_per_channel': 6,
 'pca_nwaveforms_max': 20000,
 'prb_file': '3.prb',
 'raw_data_files': ['/mnt/packrat/userdirs/david/zpool1/DT6/20170115_216um_432um_170115_180451/20170115_216um_432um_170115_180451.dat'],
 'sample_rate': 20000.0,
 'save_high': False,
 'save_low': False,
 'save_raw': False,
 'threshold_strong_std_factor': 4.5,
 'threshold_weak_std_factor': 2.0,
 'use_single_threshold': False,
 'voltage_gain': 10.0,
 'waveforms_nsamples': 32,
 'weight_power': 2}
2017-01-15 19:53:32  main:200                Threshold: DoubleThreshold(strong=array([ 285.22309234,  308.39721006,  305.50320318,  300.43342712,
        303.62621453,  295.57497256,  261.74345264,  293.79879677,
        297.42572047,  299.68318802,  254.662022  ,  245.15471163,
        296.03171044,  310.93344077,  320.31582175,  308.19526236,
        321.92421858,  328.95389841,  313.15615867,  304.73313259,
        262.23991151,  262.04067007,  310.46275444,  298.05593285,
        243.9380726 ,  277.26548242,  297.27673062,  304.63789304,
        294.86428256,  296.81375988,  306.66911272,  313.59983036,
        215.972964  ,  225.63277898,  253.73039094,  224.9713419 ,
        228.42407038,  257.82698062,  279.92307954,  279.96748262,
        304.38969036,  296.69470911,  301.42550337,  293.20672559,
        267.4707128 ,  268.82445458,  278.96326099,  291.42359096,
        215.85758479,  212.85050427,  239.47916069,  238.77864978,
        247.0129508 ,  256.79755506,  249.35155755,  258.84640037,
        225.73709227,  259.1829385 ,  269.39293696,  225.23599217,
        298.68163741,  359.35509331,  286.62063838,  304.80307571,
        271.91721584,  280.53321634,  251.2866659 ,  255.26787197,
        261.20388983,  251.00099889,  261.02089907,  261.47467421,
        255.48828124,  257.81964889,  257.04772558,  256.47346694,
        237.38388684,  219.65993909,  216.50069138,  233.04459507,
        273.48411897,  307.3955634 ,  275.88927498,  269.94544794,
        291.40898832,  281.54826862,  279.96958875,  288.37596391,
        267.88936729,  280.55732481,  228.1314303 ,  256.77325267,
        258.30567517,  227.71641798,  272.65625871,  270.81380225]), weak=array([ 126.76581882,  137.0654267 ,  135.77920141,  133.52596761,
        134.94498424,  131.36665447,  116.3304234 ,  130.57724301,
        132.1892091 ,  133.19252801,  113.18312089,  108.95764961,
        131.56964909,  138.19264034,  142.36258744,  136.97567216,
        143.07743048,  146.20173263,  139.18051496,  135.43694782,
        116.55107178,  116.46252003,  137.98344642,  132.46930349,
        108.41692115,  123.2291033 ,  132.12299139,  135.39461913,
        131.05079225,  131.91722661,  136.29738343,  139.37770238,
         95.987984  ,  100.2812351 ,  112.76906264,   99.98726307,
        101.52180906,  114.58976916,  124.41025757,  124.42999227,
        135.28430683,  131.86431516,  133.96689039,  130.31410026,
        118.87587236,  119.47753537,  123.98367155,  129.52159598,
         95.93670435,   94.60022412,  106.43518253,  106.12384435,
        109.78353369,  114.13224669,  110.82291447,  115.04284461,
        100.32759656,  115.19241711,  119.7301942 ,  100.10488541,
        132.7473944 ,  159.71337481,  127.38695039,  135.46803365,
        120.85209593,  124.68142948,  111.68296262,  113.45238754,
        116.0906177 ,  111.55599951,  116.00928848,  116.21096631,
        113.55034722,  114.58651062,  114.24343359,  113.98820753,
        105.50394971,   97.6266396 ,   96.2225295 ,  103.57537559,
        121.54849732,  136.6202504 ,  122.61745555,  119.97575464,
        129.51510592,  125.13256383,  124.43092833,  128.16709507,
        119.06194102,  124.69214436,  101.3917468 ,  114.12144563,
        114.8025223 ,  101.20729688,  121.18055943,  120.36168989]))
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2017-01-15 19:54:03  progressbar:97          1% complete, 30s elapsed, 30m 15s remaining. 2329 spikes found.
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2017-01-15 19:54:33  progressbar:97          3% complete, 1m 0s elapsed, 27m 30s remaining. 4179 spikes found.
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2017-01-15 19:58:35  progressbar:97          15% complete, 5m 3s elapsed, 28m 6s remaining. 17274 spikes found.
2017-01-15 19:58:35  main:222                Processing chunk <Chunk (13041400/85600800), recording 0>...
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2017-01-15 19:59:06  progressbar:97          16% complete, 5m 33s elapsed, 27m 57s remaining. 19356 spikes found.
2017-01-15 19:59:06  main:222                Processing chunk <Chunk (14203700/85600800), recording 0>...
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2017-01-15 19:59:36  progressbar:97          17% complete, 6m 4s elapsed, 28m 10s remaining. 21033 spikes found.
2017-01-15 19:59:36  main:222                Processing chunk <Chunk (15169000/85600800), recording 0>...
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2017-01-15 20:00:08  progressbar:97          18% complete, 6m 35s elapsed, 28m 21s remaining. 22879 spikes found.
2017-01-15 20:00:08  main:222                Processing chunk <Chunk (16134300/85600800), recording 0>...
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2017-01-15 20:00:38  progressbar:97          20% complete, 7m 5s elapsed, 28m 10s remaining. 24469 spikes found.
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2017-01-15 20:01:08  progressbar:97          21% complete, 7m 35s elapsed, 28m 31s remaining. 26786 spikes found.
2017-01-15 20:01:08  main:222                Processing chunk <Chunk (18005800/85600800), recording 0>...
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2017-01-15 20:01:39  progressbar:97          22% complete, 8m 6s elapsed, 28m 30s remaining. 28578 spikes found.
2017-01-15 20:01:39  main:222                Processing chunk <Chunk (18951400/85600800), recording 0>...
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2017-01-15 20:02:09  progressbar:97          23% complete, 8m 36s elapsed, 28m 41s remaining. 29861 spikes found.
2017-01-15 20:02:09  main:222                Processing chunk <Chunk (19759100/85600800), recording 0>...
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2017-01-15 20:02:40  progressbar:97          24% complete, 9m 7s elapsed, 28m 52s remaining. 31107 spikes found.
2017-01-15 20:02:40  main:222                Processing chunk <Chunk (20547100/85600800), recording 0>...
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2017-01-15 20:03:10  progressbar:97          24% complete, 9m 37s elapsed, 28m 53s remaining. 32387 spikes found.
2017-01-15 20:03:10  main:222                Processing chunk <Chunk (21394200/85600800), recording 0>...
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2017-01-15 20:03:40  progressbar:97          26% complete, 10m 7s elapsed, 28m 47s remaining. 33674 spikes found.
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2017-01-15 20:04:11  progressbar:97          27% complete, 10m 38s elapsed, 28m 37s remaining. 35012 spikes found.
2017-01-15 20:04:11  main:222                Processing chunk <Chunk (23206600/85600800), recording 0>...
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2017-01-15 20:04:41  progressbar:97          27% complete, 11m 8s elapsed, 28m 43s remaining. 36253 spikes found.
2017-01-15 20:04:41  main:222                Processing chunk <Chunk (23935500/85600800), recording 0>...
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2017-01-15 20:05:12  progressbar:97          28% complete, 11m 39s elapsed, 28m 41s remaining. 37634 spikes found.
2017-01-15 20:05:12  main:222                Processing chunk <Chunk (24723500/85600800), recording 0>...
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2017-01-15 20:05:42  progressbar:97          30% complete, 12m 9s elapsed, 28m 21s remaining. 39101 spikes found.
2017-01-15 20:05:42  main:222                Processing chunk <Chunk (25688800/85600800), recording 0>...
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2017-01-15 20:07:43  progressbar:97          34% complete, 14m 10s elapsed, 26m 26s remaining. 44546 spikes found.
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2017-01-15 20:09:13  main:222                Processing chunk <Chunk (32977800/85600800), recording 0>...
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2017-01-15 20:09:43  progressbar:97          39% complete, 16m 11s elapsed, 24m 28s remaining. 50246 spikes found.
2017-01-15 20:09:43  main:222                Processing chunk <Chunk (34081000/85600800), recording 0>...
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2017-01-15 20:10:14  progressbar:97          41% complete, 16m 41s elapsed, 23m 53s remaining. 51870 spikes found.
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2017-01-15 20:14:16  progressbar:97          50% complete, 20m 43s elapsed, 20m 4s remaining. 63940 spikes found.
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2017-01-15 20:15:47  progressbar:97          54% complete, 22m 14s elapsed, 18m 49s remaining. 69314 spikes found.
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2017-01-15 20:16:48  progressbar:97          55% complete, 23m 15s elapsed, 18m 39s remaining. 74032 spikes found.
2017-01-15 20:16:48  main:222                Processing chunk <Chunk (47496700/85600800), recording 0>...
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2017-01-15 20:17:19  progressbar:97          56% complete, 23m 46s elapsed, 18m 33s remaining. 76579 spikes found.
2017-01-15 20:17:19  main:222                Processing chunk <Chunk (48068000/85600800), recording 0>...
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2017-01-15 20:17:49  progressbar:97          56% complete, 24m 16s elapsed, 18m 21s remaining. 79070 spikes found.
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2017-01-15 20:20:20  progressbar:97          60% complete, 26m 47s elapsed, 17m 9s remaining. 89996 spikes found.
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2017-01-15 20:20:51  progressbar:97          61% complete, 27m 18s elapsed, 16m 55s remaining. 92287 spikes found.
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2017-01-15 20:22:24  progressbar:97          64% complete, 28m 51s elapsed, 15m 53s remaining. 97918 spikes found.
2017-01-15 20:22:24  main:222                Processing chunk <Chunk (55199400/85600800), recording 0>...
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2017-01-15 20:22:54  progressbar:97          65% complete, 29m 21s elapsed, 15m 27s remaining. 99865 spikes found.
2017-01-15 20:22:54  main:222                Processing chunk <Chunk (56066200/85600800), recording 0>...
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2017-01-15 20:23:24  progressbar:97          66% complete, 29m 51s elapsed, 15m 5s remaining. 101715 spikes found.
2017-01-15 20:23:24  main:222                Processing chunk <Chunk (56854200/85600800), recording 0>...
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2017-01-15 20:23:54  progressbar:97          66% complete, 30m 21s elapsed, 14m 57s remaining. 104346 spikes found.
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2017-01-15 20:24:55  progressbar:97          68% complete, 31m 22s elapsed, 14m 27s remaining. 108564 spikes found.
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2017-01-15 20:25:26  progressbar:97          69% complete, 31m 53s elapsed, 14m 10s remaining. 110777 spikes found.
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2017-01-15 20:25:56  progressbar:97          70% complete, 32m 23s elapsed, 13m 50s remaining. 112894 spikes found.
2017-01-15 20:25:56  main:222                Processing chunk <Chunk (59966800/85600800), recording 0>...
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2017-01-15 20:26:28  progressbar:97          70% complete, 32m 55s elapsed, 13m 41s remaining. 115067 spikes found.
2017-01-15 20:26:28  main:222                Processing chunk <Chunk (60459300/85600800), recording 0>...
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2017-01-15 20:26:58  progressbar:97          71% complete, 33m 25s elapsed, 13m 22s remaining. 117302 spikes found.
2017-01-15 20:26:58  main:222                Processing chunk <Chunk (61148800/85600800), recording 0>...
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2017-01-15 20:27:29  progressbar:97          72% complete, 33m 56s elapsed, 13m 2s remaining. 119907 spikes found.
2017-01-15 20:27:29  main:222                Processing chunk <Chunk (61838300/85600800), recording 0>...
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2017-01-15 20:27:59  progressbar:97          73% complete, 34m 26s elapsed, 12m 40s remaining. 121857 spikes found.
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2017-01-15 20:28:29  progressbar:97          73% complete, 34m 56s elapsed, 12m 31s remaining. 124356 spikes found.
2017-01-15 20:28:29  main:222                Processing chunk <Chunk (63020300/85600800), recording 0>...
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2017-01-15 20:29:00  progressbar:97          74% complete, 35m 27s elapsed, 12m 18s remaining. 126885 spikes found.
2017-01-15 20:29:00  main:222                Processing chunk <Chunk (63552200/85600800), recording 0>...
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2017-01-15 20:29:31  progressbar:97          75% complete, 35m 58s elapsed, 11m 55s remaining. 128571 spikes found.
2017-01-15 20:29:31  main:222                Processing chunk <Chunk (64300800/85600800), recording 0>...
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2017-01-15 20:30:01  progressbar:97          75% complete, 36m 29s elapsed, 11m 36s remaining. 130530 spikes found.
2017-01-15 20:30:01  main:222                Processing chunk <Chunk (64931200/85600800), recording 0>...
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2017-01-15 20:30:32  progressbar:97          76% complete, 36m 59s elapsed, 11m 22s remaining. 132662 spikes found.
2017-01-15 20:30:32  main:222                Processing chunk <Chunk (65463100/85600800), recording 0>...
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2017-01-15 20:31:02  progressbar:97          77% complete, 37m 29s elapsed, 11m 5s remaining. 134791 spikes found.
2017-01-15 20:31:02  main:222                Processing chunk <Chunk (66054100/85600800), recording 0>...
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2017-01-15 20:31:32  progressbar:97          77% complete, 37m 59s elapsed, 10m 43s remaining. 136956 spikes found.
2017-01-15 20:31:32  main:222                Processing chunk <Chunk (66763300/85600800), recording 0>...
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2017-01-15 20:33:03  progressbar:97          80% complete, 39m 30s elapsed, 9m 41s remaining. 143866 spikes found.
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2017-01-15 20:33:33  progressbar:97          80% complete, 40m 0s elapsed, 9m 25s remaining. 146227 spikes found.
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2017-01-15 20:34:04  progressbar:97          81% complete, 40m 31s elapsed, 9m 2s remaining. 148453 spikes found.
2017-01-15 20:34:04  main:222                Processing chunk <Chunk (69974400/85600800), recording 0>...
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2017-01-15 20:34:34  progressbar:97          82% complete, 41m 1s elapsed, 8m 41s remaining. 150730 spikes found.
2017-01-15 20:34:34  main:222                Processing chunk <Chunk (70624500/85600800), recording 0>...
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2017-01-15 20:35:04  progressbar:97          83% complete, 41m 32s elapsed, 8m 15s remaining. 152257 spikes found.
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2017-01-15 20:36:06  progressbar:97          84% complete, 42m 34s elapsed, 7m 42s remaining. 156942 spikes found.
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2017-01-15 20:36:37  progressbar:97          85% complete, 43m 4s elapsed, 7m 17s remaining. 159671 spikes found.
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2017-01-15 20:37:07  progressbar:97          86% complete, 43m 34s elapsed, 6m 47s remaining. 162312 spikes found.
2017-01-15 20:37:07  main:222                Processing chunk <Chunk (74052300/85600800), recording 0>...
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2017-01-15 20:37:37  progressbar:97          87% complete, 44m 4s elapsed, 6m 20s remaining. 165251 spikes found.
2017-01-15 20:37:37  main:222                Processing chunk <Chunk (74840300/85600800), recording 0>...
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2017-01-15 20:38:07  progressbar:97          88% complete, 44m 34s elapsed, 5m 44s remaining. 168037 spikes found.
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2017-01-15 20:38:39  progressbar:97          89% complete, 45m 7s elapsed, 5m 12s remaining. 170963 spikes found.
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2017-01-15 20:39:09  progressbar:97          90% complete, 45m 37s elapsed, 4m 46s remaining. 173829 spikes found.
2017-01-15 20:39:09  main:222                Processing chunk <Chunk (77499800/85600800), recording 0>...
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2017-01-15 20:39:40  progressbar:97          91% complete, 46m 7s elapsed, 4m 26s remaining. 175913 spikes found.
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2017-01-15 20:40:10  progressbar:97          91% complete, 46m 37s elapsed, 4m 5s remaining. 177930 spikes found.
2017-01-15 20:40:10  main:222                Processing chunk <Chunk (78701500/85600800), recording 0>...
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2017-01-15 20:40:40  progressbar:97          92% complete, 47m 8s elapsed, 3m 35s remaining. 179897 spikes found.
2017-01-15 20:40:40  main:222                Processing chunk <Chunk (79528900/85600800), recording 0>...
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2017-01-15 20:41:11  progressbar:97          93% complete, 47m 38s elapsed, 3m 14s remaining. 182379 spikes found.
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