2017-01-15 19:56:28  main:187                Starting SpikeDetekt version 0.3.0 on <DatRawReader /mnt/packrat/userdirs/david/zpool1/DT6/20170115_216um_432um_170115_180451/20170115_216um_432um_170115_180451.dat>
2017-01-15 19:56:28  main:188                Parameters: 
{'__doc__': 'Contain default parameters.',
 'canonical_pcs': None,
 'chunk_overlap': 300,
 'chunk_size': 20000,
 'connected_component_join_size': 1,
 'detect_spikes': 'negative',
 'diagnostics_path': None,
 'excerpt_size': 20000,
 'experiment_name': '/mnt/packrat/userdirs/david/zpool1/DT6/20170115_216um_432um_170115_180451/4/20170115_216um_432um_170115_180451_sh4',
 'extract_s_after': 16,
 'extract_s_before': 16,
 'features_contiguous': True,
 'filter_butter_order': 3,
 'filter_high': 9500.0,
 'filter_low': 500.0,
 'nbits': 16,
 'nchannels': 96,
 'nexcerpts': 60,
 'nfeatures_per_channel': 6,
 'pca_nwaveforms_max': 20000,
 'prb_file': '4.prb',
 'raw_data_files': ['/mnt/packrat/userdirs/david/zpool1/DT6/20170115_216um_432um_170115_180451/20170115_216um_432um_170115_180451.dat'],
 'sample_rate': 20000.0,
 'save_high': False,
 'save_low': False,
 'save_raw': False,
 'threshold_strong_std_factor': 4.5,
 'threshold_weak_std_factor': 2.0,
 'use_single_threshold': False,
 'voltage_gain': 10.0,
 'waveforms_nsamples': 32,
 'weight_power': 2}
2017-01-15 19:56:55  main:200                Threshold: DoubleThreshold(strong=array([ 285.22309234,  308.39721006,  305.50320318,  300.43342712,
        303.62621453,  295.57497256,  261.74345264,  293.79879677,
        297.42572047,  299.68318802,  254.662022  ,  245.15471163,
        296.03171044,  310.93344077,  320.31582175,  308.19526236,
        321.92421858,  328.95389841,  313.15615867,  304.73313259,
        262.23991151,  262.04067007,  310.46275444,  298.05593285,
        243.9380726 ,  277.26548242,  297.27673062,  304.63789304,
        294.86428256,  296.81375988,  306.66911272,  313.59983036,
        215.972964  ,  225.63277898,  253.73039094,  224.9713419 ,
        228.42407038,  257.82698062,  279.92307954,  279.96748262,
        304.38969036,  296.69470911,  301.42550337,  293.20672559,
        267.4707128 ,  268.82445458,  278.96326099,  291.42359096,
        215.85758479,  212.85050427,  239.47916069,  238.77864978,
        247.0129508 ,  256.79755506,  249.35155755,  258.84640037,
        225.73709227,  259.1829385 ,  269.39293696,  225.23599217,
        298.68163741,  359.35509331,  286.62063838,  304.80307571,
        271.91721584,  280.53321634,  251.2866659 ,  255.26787197,
        261.20388983,  251.00099889,  261.02089907,  261.47467421,
        255.48828124,  257.81964889,  257.04772558,  256.47346694,
        237.38388684,  219.65993909,  216.50069138,  233.04459507,
        273.48411897,  307.3955634 ,  275.88927498,  269.94544794,
        291.40898832,  281.54826862,  279.96958875,  288.37596391,
        267.88936729,  280.55732481,  228.1314303 ,  256.77325267,
        258.30567517,  227.71641798,  272.65625871,  270.81380225]), weak=array([ 126.76581882,  137.0654267 ,  135.77920141,  133.52596761,
        134.94498424,  131.36665447,  116.3304234 ,  130.57724301,
        132.1892091 ,  133.19252801,  113.18312089,  108.95764961,
        131.56964909,  138.19264034,  142.36258744,  136.97567216,
        143.07743048,  146.20173263,  139.18051496,  135.43694782,
        116.55107178,  116.46252003,  137.98344642,  132.46930349,
        108.41692115,  123.2291033 ,  132.12299139,  135.39461913,
        131.05079225,  131.91722661,  136.29738343,  139.37770238,
         95.987984  ,  100.2812351 ,  112.76906264,   99.98726307,
        101.52180906,  114.58976916,  124.41025757,  124.42999227,
        135.28430683,  131.86431516,  133.96689039,  130.31410026,
        118.87587236,  119.47753537,  123.98367155,  129.52159598,
         95.93670435,   94.60022412,  106.43518253,  106.12384435,
        109.78353369,  114.13224669,  110.82291447,  115.04284461,
        100.32759656,  115.19241711,  119.7301942 ,  100.10488541,
        132.7473944 ,  159.71337481,  127.38695039,  135.46803365,
        120.85209593,  124.68142948,  111.68296262,  113.45238754,
        116.0906177 ,  111.55599951,  116.00928848,  116.21096631,
        113.55034722,  114.58651062,  114.24343359,  113.98820753,
        105.50394971,   97.6266396 ,   96.2225295 ,  103.57537559,
        121.54849732,  136.6202504 ,  122.61745555,  119.97575464,
        129.51510592,  125.13256383,  124.43092833,  128.16709507,
        119.06194102,  124.69214436,  101.3917468 ,  114.12144563,
        114.8025223 ,  101.20729688,  121.18055943,  120.36168989]))
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2017-01-15 19:57:25  progressbar:97          1% complete, 30s elapsed, 44m 55s remaining. 949 spikes found.
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2017-01-15 19:57:56  progressbar:97          2% complete, 1m 1s elapsed, 39m 17s remaining. 1510 spikes found.
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2017-01-15 20:00:57  progressbar:97          11% complete, 4m 2s elapsed, 30m 53s remaining. 5928 spikes found.
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2017-01-15 20:01:27  progressbar:97          12% complete, 4m 32s elapsed, 30m 41s remaining. 6903 spikes found.
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2017-01-15 20:02:58  progressbar:97          16% complete, 6m 3s elapsed, 31m 41s remaining. 9096 spikes found.
2017-01-15 20:02:58  main:222                Processing chunk <Chunk (13730900/85600800), recording 0>...
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2017-01-15 20:03:28  progressbar:97          17% complete, 6m 33s elapsed, 31m 54s remaining. 9770 spikes found.
2017-01-15 20:03:28  main:222                Processing chunk <Chunk (14597700/85600800), recording 0>...
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2017-01-15 20:03:58  progressbar:97          17% complete, 7m 3s elapsed, 32m 13s remaining. 10597 spikes found.
2017-01-15 20:03:58  main:222                Processing chunk <Chunk (15385700/85600800), recording 0>...
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2017-01-15 20:04:29  progressbar:97          18% complete, 7m 34s elapsed, 32m 26s remaining. 11674 spikes found.
2017-01-15 20:04:29  main:222                Processing chunk <Chunk (16193400/85600800), recording 0>...
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2017-01-15 20:04:59  progressbar:97          19% complete, 8m 4s elapsed, 32m 19s remaining. 12404 spikes found.
2017-01-15 20:04:59  main:222                Processing chunk <Chunk (17099600/85600800), recording 0>...
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2017-01-15 20:08:31  progressbar:97          28% complete, 11m 36s elapsed, 29m 28s remaining. 17889 spikes found.
2017-01-15 20:08:31  main:222                Processing chunk <Chunk (24171900/85600800), recording 0>...
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2017-01-15 20:09:01  progressbar:97          29% complete, 12m 6s elapsed, 29m 8s remaining. 18741 spikes found.
2017-01-15 20:09:01  main:222                Processing chunk <Chunk (25117500/85600800), recording 0>...
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2017-01-15 20:09:31  progressbar:97          30% complete, 12m 36s elapsed, 28m 29s remaining. 19491 spikes found.
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2017-01-15 20:10:01  progressbar:97          31% complete, 13m 6s elapsed, 27m 57s remaining. 20040 spikes found.
2017-01-15 20:10:01  main:222                Processing chunk <Chunk (27323900/85600800), recording 0>...
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2017-01-15 20:10:32  progressbar:97          33% complete, 13m 37s elapsed, 27m 23s remaining. 20629 spikes found.
2017-01-15 20:10:32  main:222                Processing chunk <Chunk (28427100/85600800), recording 0>...
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2017-01-15 20:11:02  progressbar:97          34% complete, 14m 7s elapsed, 26m 48s remaining. 21342 spikes found.
2017-01-15 20:11:02  main:222                Processing chunk <Chunk (29530300/85600800), recording 0>...
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2017-01-15 20:11:32  progressbar:97          35% complete, 14m 37s elapsed, 26m 13s remaining. 21925 spikes found.
2017-01-15 20:11:32  main:222                Processing chunk <Chunk (30653200/85600800), recording 0>...
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2017-01-15 20:13:03  progressbar:97          39% complete, 16m 8s elapsed, 24m 30s remaining. 23859 spikes found.
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2017-01-15 20:15:04  progressbar:97          45% complete, 18m 9s elapsed, 22m 2s remaining. 26460 spikes found.
2017-01-15 20:15:04  main:222                Processing chunk <Chunk (38651400/85600800), recording 0>...
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2017-01-15 20:16:34  progressbar:97          48% complete, 19m 39s elapsed, 20m 34s remaining. 28971 spikes found.
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2017-01-15 20:17:35  progressbar:97          51% complete, 20m 40s elapsed, 19m 25s remaining. 30811 spikes found.
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2017-01-15 20:19:06  progressbar:97          54% complete, 22m 11s elapsed, 18m 14s remaining. 35957 spikes found.
2017-01-15 20:19:06  main:222                Processing chunk <Chunk (46984500/85600800), recording 0>...
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2017-01-15 20:19:37  progressbar:97          55% complete, 22m 42s elapsed, 17m 56s remaining. 38219 spikes found.
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2017-01-15 20:21:38  progressbar:97          59% complete, 24m 43s elapsed, 16m 52s remaining. 46346 spikes found.
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2017-01-15 20:22:09  progressbar:97          60% complete, 25m 13s elapsed, 16m 38s remaining. 48685 spikes found.
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2017-01-15 20:22:39  progressbar:97          61% complete, 25m 44s elapsed, 16m 26s remaining. 50452 spikes found.
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2017-01-15 20:23:10  progressbar:97          61% complete, 26m 14s elapsed, 16m 13s remaining. 52482 spikes found.
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2017-01-15 20:24:11  progressbar:97          63% complete, 27m 15s elapsed, 15m 21s remaining. 55458 spikes found.
2017-01-15 20:24:11  main:222                Processing chunk <Chunk (54766000/85600800), recording 0>...
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2017-01-15 20:24:41  progressbar:97          65% complete, 27m 46s elapsed, 14m 55s remaining. 56526 spikes found.
2017-01-15 20:24:41  main:222                Processing chunk <Chunk (55672200/85600800), recording 0>...
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2017-01-15 20:25:11  progressbar:97          65% complete, 28m 16s elapsed, 14m 35s remaining. 58042 spikes found.
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2017-01-15 20:25:42  progressbar:97          66% complete, 28m 46s elapsed, 14m 25s remaining. 60232 spikes found.
2017-01-15 20:25:42  main:222                Processing chunk <Chunk (57031500/85600800), recording 0>...
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2017-01-15 20:26:12  progressbar:97          67% complete, 29m 17s elapsed, 14m 13s remaining. 62016 spikes found.
2017-01-15 20:26:12  main:222                Processing chunk <Chunk (57622500/85600800), recording 0>...
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2017-01-15 20:27:15  progressbar:97          68% complete, 30m 20s elapsed, 13m 40s remaining. 65547 spikes found.
2017-01-15 20:27:15  main:222                Processing chunk <Chunk (59001500/85600800), recording 0>...
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2017-01-15 20:27:46  progressbar:97          69% complete, 30m 50s elapsed, 13m 22s remaining. 67148 spikes found.
2017-01-15 20:27:46  main:222                Processing chunk <Chunk (59710700/85600800), recording 0>...
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2017-01-15 20:28:16  progressbar:97          70% complete, 31m 20s elapsed, 13m 7s remaining. 69292 spikes found.
2017-01-15 20:28:16  main:222                Processing chunk <Chunk (60341100/85600800), recording 0>...
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2017-01-15 20:28:46  progressbar:97          71% complete, 31m 51s elapsed, 12m 53s remaining. 71284 spikes found.
2017-01-15 20:28:46  main:222                Processing chunk <Chunk (60932100/85600800), recording 0>...
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2017-01-15 20:29:17  progressbar:97          71% complete, 32m 21s elapsed, 12m 36s remaining. 72981 spikes found.
2017-01-15 20:29:17  main:222                Processing chunk <Chunk (61601900/85600800), recording 0>...
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2017-01-15 20:29:47  progressbar:97          72% complete, 32m 51s elapsed, 12m 22s remaining. 74621 spikes found.
2017-01-15 20:29:47  main:222                Processing chunk <Chunk (62192900/85600800), recording 0>...
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2017-01-15 20:35:55  progressbar:97          82% complete, 39m 0s elapsed, 8m 31s remaining. 97205 spikes found.
2017-01-15 20:35:55  main:222                Processing chunk <Chunk (70250200/85600800), recording 0>...
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2017-01-15 20:36:25  progressbar:97          83% complete, 39m 30s elapsed, 7m 57s remaining. 98032 spikes found.
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2017-01-15 20:40:58  progressbar:97          91% complete, 44m 2s elapsed, 4m 3s remaining. 116484 spikes found.
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2017-01-15 20:41:28  progressbar:97          92% complete, 44m 33s elapsed, 3m 38s remaining. 118169 spikes found.
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2017-01-15 20:41:59  progressbar:97          93% complete, 45m 4s elapsed, 3m 7s remaining. 120247 spikes found.
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2017-01-15 20:44:30  main:222                Processing chunk <Chunk (85064600/85600800), recording 0>...
2017-01-15 20:44:30  main:222                Processing chunk <Chunk (85084300/85600800), recording 0>...
2017-01-15 20:44:30  main:222                Processing chunk <Chunk (85104000/85600800), recording 0>...
2017-01-15 20:44:31  progressbar:97          99% complete, 47m 36s elapsed, 15s remaining. 127622 spikes found.
2017-01-15 20:44:31  main:222                Processing chunk <Chunk (85123700/85600800), recording 0>...
2017-01-15 20:44:31  main:222                Processing chunk <Chunk (85143400/85600800), recording 0>...
2017-01-15 20:44:32  main:222                Processing chunk <Chunk (85163100/85600800), recording 0>...
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2017-01-15 20:44:33  main:222                Processing chunk <Chunk (85202500/85600800), recording 0>...
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2017-01-15 20:44:34  main:222                Processing chunk <Chunk (85241900/85600800), recording 0>...
2017-01-15 20:44:34  main:222                Processing chunk <Chunk (85261600/85600800), recording 0>...
2017-01-15 20:44:34  main:222                Processing chunk <Chunk (85281300/85600800), recording 0>...
2017-01-15 20:44:35  main:222                Processing chunk <Chunk (85301000/85600800), recording 0>...
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2017-01-15 20:44:36  main:222                Processing chunk <Chunk (85340400/85600800), recording 0>...
2017-01-15 20:44:36  main:222                Processing chunk <Chunk (85360100/85600800), recording 0>...
2017-01-15 20:44:37  main:222                Processing chunk <Chunk (85379800/85600800), recording 0>...
2017-01-15 20:44:37  main:222                Processing chunk <Chunk (85399500/85600800), recording 0>...
2017-01-15 20:44:38  main:222                Processing chunk <Chunk (85419200/85600800), recording 0>...
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2017-01-15 20:44:38  main:222                Processing chunk <Chunk (85458600/85600800), recording 0>...
2017-01-15 20:44:39  main:222                Processing chunk <Chunk (85478300/85600800), recording 0>...
2017-01-15 20:44:39  main:222                Processing chunk <Chunk (85498000/85600800), recording 0>...
2017-01-15 20:44:40  main:222                Processing chunk <Chunk (85517700/85600800), recording 0>...
2017-01-15 20:44:40  main:222                Processing chunk <Chunk (85537400/85600800), recording 0>...
2017-01-15 20:44:40  main:222                Processing chunk <Chunk (85557100/85600800), recording 0>...
2017-01-15 20:44:41  main:222                Processing chunk <Chunk (85576800/85600800), recording 0>...
2017-01-15 20:44:41  main:222                Processing chunk <Chunk (85596500/85600800), recording 0>...
2017-01-15 20:44:41  progressbar:97          100% complete, 47m 46s elapsed, 0s remaining. 127868 spikes found.