2017-01-18 21:34:58  main:187                Starting SpikeDetekt version 0.3.0 on <DatRawReader /mnt/packrat/userdirs/david/zpool1/DT6/20170118_792um_540um_170118_200033/20170118_792um_540um_170118_200033.dat>
2017-01-18 21:34:58  main:188                Parameters: 
{'__doc__': 'Contain default parameters.',
 'canonical_pcs': None,
 'chunk_overlap': 300,
 'chunk_size': 20000,
 'connected_component_join_size': 1,
 'detect_spikes': 'negative',
 'diagnostics_path': None,
 'excerpt_size': 20000,
 'experiment_name': '/mnt/packrat/userdirs/david/zpool1/DT6/20170118_792um_540um_170118_200033/3/20170118_792um_540um_170118_200033_sh3',
 'extract_s_after': 16,
 'extract_s_before': 16,
 'features_contiguous': True,
 'filter_butter_order': 3,
 'filter_high': 9500.0,
 'filter_low': 500.0,
 'nbits': 16,
 'nchannels': 96,
 'nexcerpts': 60,
 'nfeatures_per_channel': 6,
 'pca_nwaveforms_max': 20000,
 'prb_file': '3.prb',
 'raw_data_files': ['/mnt/packrat/userdirs/david/zpool1/DT6/20170118_792um_540um_170118_200033/20170118_792um_540um_170118_200033.dat'],
 'sample_rate': 20000.0,
 'save_high': False,
 'save_low': False,
 'save_raw': False,
 'threshold_strong_std_factor': 4.5,
 'threshold_weak_std_factor': 2.0,
 'use_single_threshold': False,
 'voltage_gain': 10.0,
 'waveforms_nsamples': 32,
 'weight_power': 2}
2017-01-18 21:35:27  main:200                Threshold: DoubleThreshold(strong=array([ 293.30092685,  310.72055239,  279.86344606,  244.96308113,
        278.38530907,  294.8644906 ,  297.20710679,  273.91401817,
        235.23494015,  323.45233669,  340.88320541,  339.32119982,
        276.54810036,  349.47742044,  325.04354398,  307.19304587,
        326.46248097,  321.34834266,  320.558288  ,  311.27308267,
        312.70833719,  336.80264155,  309.4972222 ,  297.10030777,
        320.3585582 ,  314.54830855,  307.33671484,  300.68056914,
        311.26570494,  304.79474187,  289.01600958,  306.48143199,
        267.61378994,  289.11009698,  306.6077789 ,  290.97935148,
        288.91912831,  289.81629783,  291.76275457,  287.44166919,
        335.40072337,  354.03315266,  385.76354382,  356.85044414,
        301.66099615,  295.20483453,  305.87301419,  338.06068141,
        249.08672084,  260.76672156,  279.39392666,  267.04609695,
        278.8808576 ,  284.01922177,  277.0813973 ,  280.67325181,
        264.81407665,  293.95384483,  295.37936403,  262.69108555,
        317.25441738,  325.39309347,  326.46253088,  331.93834539,
        280.84219237,  291.73702568,  274.53351804,  283.64524038,
        286.98455526,  275.9458485 ,  276.12199603,  256.57820703,
        283.07111516,  274.45768698,  270.88473234,  277.60422297,
        273.32578874,  285.29853633,  270.06899162,  279.17288212,
        314.34493234,  373.92998769,  295.57662815,  311.86964123,
        320.46131167,  326.5412987 ,  318.88061923,  315.77574264,
        309.76237395,  302.7307134 ,  313.38866923,  319.55048247,
        283.37098362,  283.01990586,  275.8976046 ,  289.23718319]), weak=array([ 130.35596749,  138.09802328,  124.38375381,  108.8724805 ,
        123.72680403,  131.05088471,  132.09204746,  121.73956363,
        104.54886229,  143.75659409,  151.50364685,  150.80942214,
        122.91026683,  155.32329797,  144.46379733,  136.53024261,
        145.09443599,  142.82148563,  142.47035022,  138.3435923 ,
        138.9814832 ,  149.69006291,  137.55432098,  132.04458123,
        142.38158142,  139.79924824,  136.59409548,  133.63580851,
        138.34031331,  135.46432972,  128.45155981,  136.21396977,
        118.93946219,  128.49337644,  136.27012396,  129.32415621,
        128.40850147,  128.80724348,  129.67233536,  127.75185297,
        149.06698817,  157.34806785,  171.45046392,  158.6001974 ,
        134.07155384,  131.20214868,  135.94356186,  150.24919174,
        110.70520926,  115.89632069,  124.17507851,  118.6871542 ,
        123.94704782,  126.23076523,  123.14728769,  124.74366747,
        117.69514518,  130.64615326,  131.27971735,  116.75159358,
        141.00196328,  144.61915265,  145.09445817,  147.5281535 ,
        124.81875216,  129.6609003 ,  122.0148969 ,  126.06455128,
        127.54869123,  122.64259933,  122.72088713,  114.03475868,
        125.80938452,  121.98119421,  120.39321437,  123.37965465,
        121.47812833,  126.79934948,  120.03066294,  124.0768365 ,
        139.70885882,  166.19110564,  131.36739029,  138.60872944,
        142.42724963,  145.12946609,  141.72471966,  140.34477451,
        137.6721662 ,  134.54698373,  139.28385299,  142.02243665,
        125.94265939,  125.78662483,  122.6211576 ,  128.5498592 ]))
2017-01-18 21:35:27  main:222                Processing chunk <Chunk (0/78942960), recording 0>...
2017-01-18 21:35:28  progressbar:97          0% complete, 0s elapsed. 29 spikes found.
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2017-01-18 21:36:28  progressbar:97          2% complete, 1m 0s elapsed, 35m 20s remaining. 1352 spikes found.
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2017-01-18 21:36:59  progressbar:97          3% complete, 1m 31s elapsed, 39m 20s remaining. 3017 spikes found.
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2017-01-18 21:55:11  progressbar:97          54% complete, 19m 43s elapsed, 16m 12s remaining. 24007 spikes found.
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2017-01-18 21:55:41  progressbar:97          55% complete, 20m 13s elapsed, 15m 55s remaining. 25494 spikes found.
2017-01-18 21:55:41  main:222                Processing chunk <Chunk (44167400/78942960), recording 0>...
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2017-01-18 21:56:12  progressbar:97          56% complete, 20m 44s elapsed, 15m 47s remaining. 28076 spikes found.
2017-01-18 21:56:12  main:222                Processing chunk <Chunk (44817500/78942960), recording 0>...
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2017-01-18 21:56:43  progressbar:97          57% complete, 21m 15s elapsed, 15m 37s remaining. 29990 spikes found.
2017-01-18 21:56:43  main:222                Processing chunk <Chunk (45507000/78942960), recording 0>...
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2017-01-18 21:57:14  progressbar:97          58% complete, 21m 46s elapsed, 15m 31s remaining. 32274 spikes found.
2017-01-18 21:57:14  main:222                Processing chunk <Chunk (46078300/78942960), recording 0>...
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2017-01-18 21:57:44  progressbar:97          59% complete, 22m 16s elapsed, 15m 22s remaining. 34475 spikes found.
2017-01-18 21:57:44  main:222                Processing chunk <Chunk (46708700/78942960), recording 0>...
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2017-01-18 21:58:14  progressbar:97          60% complete, 22m 47s elapsed, 15m 7s remaining. 36322 spikes found.
2017-01-18 21:58:14  main:222                Processing chunk <Chunk (47437600/78942960), recording 0>...
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2017-01-18 22:01:17  progressbar:97          66% complete, 25m 50s elapsed, 12m 59s remaining. 44568 spikes found.
2017-01-18 22:01:17  main:222                Processing chunk <Chunk (52520200/78942960), recording 0>...
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2017-01-18 22:01:49  progressbar:97          67% complete, 26m 21s elapsed, 12m 43s remaining. 46174 spikes found.
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2017-01-18 22:02:20  progressbar:97          68% complete, 26m 52s elapsed, 12m 27s remaining. 47967 spikes found.
2017-01-18 22:02:20  main:222                Processing chunk <Chunk (53938600/78942960), recording 0>...
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2017-01-18 22:02:51  progressbar:97          69% complete, 27m 23s elapsed, 12m 6s remaining. 49424 spikes found.
2017-01-18 22:02:51  main:222                Processing chunk <Chunk (54746300/78942960), recording 0>...
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2017-01-18 22:03:21  progressbar:97          70% complete, 27m 53s elapsed, 11m 52s remaining. 51075 spikes found.
2017-01-18 22:03:21  main:222                Processing chunk <Chunk (55376700/78942960), recording 0>...
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2017-01-18 22:03:52  progressbar:97          71% complete, 28m 24s elapsed, 11m 33s remaining. 52399 spikes found.
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2017-01-18 22:04:23  progressbar:97          71% complete, 28m 55s elapsed, 11m 24s remaining. 54510 spikes found.
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2017-01-18 22:04:54  progressbar:97          72% complete, 29m 26s elapsed, 11m 16s remaining. 56462 spikes found.
2017-01-18 22:04:54  main:222                Processing chunk <Chunk (57090600/78942960), recording 0>...
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2017-01-18 22:05:25  progressbar:97          73% complete, 29m 57s elapsed, 10m 59s remaining. 58253 spikes found.
2017-01-18 22:05:25  main:222                Processing chunk <Chunk (57760400/78942960), recording 0>...
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2017-01-18 22:05:55  progressbar:97          74% complete, 30m 27s elapsed, 10m 39s remaining. 59702 spikes found.
2017-01-18 22:05:55  main:222                Processing chunk <Chunk (58489300/78942960), recording 0>...
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2017-01-18 22:06:26  progressbar:97          74% complete, 30m 58s elapsed, 10m 23s remaining. 61332 spikes found.
2017-01-18 22:06:26  main:222                Processing chunk <Chunk (59119700/78942960), recording 0>...
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2017-01-18 22:06:57  progressbar:97          75% complete, 31m 29s elapsed, 10m 0s remaining. 62784 spikes found.
2017-01-18 22:06:57  main:222                Processing chunk <Chunk (59907700/78942960), recording 0>...
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2017-01-18 22:07:28  progressbar:97          76% complete, 32m 0s elapsed, 9m 37s remaining. 64001 spikes found.
2017-01-18 22:07:28  main:222                Processing chunk <Chunk (60695700/78942960), recording 0>...
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2017-01-18 22:10:31  progressbar:97          82% complete, 35m 3s elapsed, 7m 38s remaining. 72510 spikes found.
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2017-01-18 22:11:02  progressbar:97          83% complete, 35m 34s elapsed, 7m 14s remaining. 73557 spikes found.
2017-01-18 22:11:02  main:222                Processing chunk <Chunk (65581300/78942960), recording 0>...
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2017-01-18 22:11:32  progressbar:97          84% complete, 36m 4s elapsed, 6m 39s remaining. 73906 spikes found.
2017-01-18 22:11:32  main:222                Processing chunk <Chunk (66645100/78942960), recording 0>...
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2017-01-18 22:12:03  progressbar:97          84% complete, 36m 35s elapsed, 6m 29s remaining. 75867 spikes found.
2017-01-18 22:12:03  main:222                Processing chunk <Chunk (67058800/78942960), recording 0>...
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2017-01-18 22:12:33  progressbar:97          85% complete, 37m 6s elapsed, 6m 19s remaining. 76273 spikes found.
2017-01-18 22:12:33  main:222                Processing chunk <Chunk (67433100/78942960), recording 0>...
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2017-01-18 22:13:04  progressbar:97          85% complete, 37m 36s elapsed, 6m 12s remaining. 76886 spikes found.
2017-01-18 22:13:04  main:222                Processing chunk <Chunk (67768000/78942960), recording 0>...
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2017-01-18 22:13:35  progressbar:97          86% complete, 38m 7s elapsed, 6m 0s remaining. 77492 spikes found.
2017-01-18 22:13:35  main:222                Processing chunk <Chunk (68201400/78942960), recording 0>...
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2017-01-18 22:14:05  progressbar:97          86% complete, 38m 37s elapsed, 5m 51s remaining. 78422 spikes found.
2017-01-18 22:14:05  main:222                Processing chunk <Chunk (68536300/78942960), recording 0>...
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2017-01-18 22:14:37  progressbar:97          87% complete, 39m 9s elapsed, 5m 46s remaining. 79253 spikes found.
2017-01-18 22:14:37  main:222                Processing chunk <Chunk (68792400/78942960), recording 0>...
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2017-01-18 22:15:09  progressbar:97          87% complete, 39m 41s elapsed, 5m 38s remaining. 80344 spikes found.
2017-01-18 22:15:09  main:222                Processing chunk <Chunk (69127300/78942960), recording 0>...
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2017-01-18 22:15:40  progressbar:97          88% complete, 40m 12s elapsed, 5m 20s remaining. 80879 spikes found.
2017-01-18 22:15:40  main:222                Processing chunk <Chunk (69678900/78942960), recording 0>...
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2017-01-18 22:16:13  progressbar:97          88% complete, 40m 45s elapsed, 5m 7s remaining. 82040 spikes found.
2017-01-18 22:16:13  main:222                Processing chunk <Chunk (70112300/78942960), recording 0>...
2017-01-18 22:16:15  main:222                Processing chunk <Chunk (70132000/78942960), recording 0>...
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2017-01-18 22:16:43  progressbar:97          89% complete, 41m 15s elapsed, 4m 56s remaining. 82988 spikes found.
2017-01-18 22:16:43  main:222                Processing chunk <Chunk (70486600/78942960), recording 0>...
2017-01-18 22:16:43  main:222                Processing chunk <Chunk (70506300/78942960), recording 0>...
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2017-01-18 22:17:14  progressbar:97          89% complete, 41m 46s elapsed, 4m 41s remaining. 83473 spikes found.
2017-01-18 22:17:14  main:222                Processing chunk <Chunk (70979100/78942960), recording 0>...
2017-01-18 22:17:17  main:222                Processing chunk <Chunk (70998800/78942960), recording 0>...
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2017-01-18 22:17:45  progressbar:97          90% complete, 42m 17s elapsed, 4m 32s remaining. 84389 spikes found.
2017-01-18 22:17:45  main:222                Processing chunk <Chunk (71274600/78942960), recording 0>...
2017-01-18 22:17:46  main:222                Processing chunk <Chunk (71294300/78942960), recording 0>...
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2017-01-18 22:18:15  progressbar:97          90% complete, 42m 48s elapsed, 4m 24s remaining. 85499 spikes found.
2017-01-18 22:18:15  main:222                Processing chunk <Chunk (71570100/78942960), recording 0>...
2017-01-18 22:18:16  main:222                Processing chunk <Chunk (71589800/78942960), recording 0>...
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2017-01-18 22:18:48  progressbar:97          91% complete, 43m 20s elapsed, 4m 10s remaining. 86339 spikes found.
2017-01-18 22:18:48  main:222                Processing chunk <Chunk (72003500/78942960), recording 0>...
2017-01-18 22:18:51  main:222                Processing chunk <Chunk (72023200/78942960), recording 0>...
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2017-01-18 22:19:20  progressbar:97          91% complete, 43m 52s elapsed, 4m 1s remaining. 87421 spikes found.
2017-01-18 22:19:20  main:222                Processing chunk <Chunk (72318700/78942960), recording 0>...
2017-01-18 22:19:22  main:222                Processing chunk <Chunk (72338400/78942960), recording 0>...
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2017-01-18 22:19:25  main:222                Processing chunk <Chunk (72417200/78942960), recording 0>...
2017-01-18 22:19:26  main:222                Processing chunk <Chunk (72436900/78942960), recording 0>...
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2017-01-18 22:19:46  main:222                Processing chunk <Chunk (72673300/78942960), recording 0>...
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2017-01-18 22:19:50  progressbar:97          92% complete, 44m 22s elapsed, 3m 47s remaining. 88214 spikes found.
2017-01-18 22:19:50  main:222                Processing chunk <Chunk (72732400/78942960), recording 0>...
2017-01-18 22:19:53  main:222                Processing chunk <Chunk (72752100/78942960), recording 0>...
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2017-01-18 22:20:16  main:222                Processing chunk <Chunk (73008200/78942960), recording 0>...
2017-01-18 22:20:19  main:222                Processing chunk <Chunk (73027900/78942960), recording 0>...
2017-01-18 22:20:21  progressbar:97          92% complete, 44m 53s elapsed, 3m 37s remaining. 89271 spikes found.
2017-01-18 22:20:21  main:222                Processing chunk <Chunk (73047600/78942960), recording 0>...
2017-01-18 22:20:22  main:222                Processing chunk <Chunk (73067300/78942960), recording 0>...
2017-01-18 22:20:24  main:222                Processing chunk <Chunk (73087000/78942960), recording 0>...
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2017-01-18 22:20:27  main:222                Processing chunk <Chunk (73146100/78942960), recording 0>...
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2017-01-18 22:20:30  main:222                Processing chunk <Chunk (73244600/78942960), recording 0>...
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2017-01-18 22:20:42  main:222                Processing chunk <Chunk (73402200/78942960), recording 0>...
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2017-01-18 22:20:48  main:222                Processing chunk <Chunk (73500700/78942960), recording 0>...
2017-01-18 22:20:50  main:222                Processing chunk <Chunk (73520400/78942960), recording 0>...
2017-01-18 22:20:53  progressbar:97          93% complete, 45m 25s elapsed, 3m 20s remaining. 89974 spikes found.
2017-01-18 22:20:53  main:222                Processing chunk <Chunk (73540100/78942960), recording 0>...
2017-01-18 22:20:55  main:222                Processing chunk <Chunk (73559800/78942960), recording 0>...
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2017-01-18 22:21:05  main:222                Processing chunk <Chunk (73717400/78942960), recording 0>...
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2017-01-18 22:21:25  progressbar:97          93% complete, 45m 58s elapsed, 3m 2s remaining. 90749 spikes found.
2017-01-18 22:21:25  main:222                Processing chunk <Chunk (74032600/78942960), recording 0>...
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2017-01-18 22:21:56  progressbar:97          94% complete, 46m 28s elapsed, 2m 49s remaining. 91897 spikes found.
2017-01-18 22:21:56  main:222                Processing chunk <Chunk (74406900/78942960), recording 0>...
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2017-01-18 22:22:27  progressbar:97          94% complete, 46m 59s elapsed, 2m 36s remaining. 92944 spikes found.
2017-01-18 22:22:27  main:222                Processing chunk <Chunk (74781200/78942960), recording 0>...
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2017-01-18 22:22:57  progressbar:97          95% complete, 47m 29s elapsed, 2m 19s remaining. 93684 spikes found.
2017-01-18 22:22:57  main:222                Processing chunk <Chunk (75254000/78942960), recording 0>...
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2017-01-18 22:23:28  progressbar:97          96% complete, 48m 0s elapsed, 1m 59s remaining. 94255 spikes found.
2017-01-18 22:23:28  main:222                Processing chunk <Chunk (75805600/78942960), recording 0>...
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2017-01-18 22:24:01  progressbar:97          96% complete, 48m 33s elapsed, 1m 48s remaining. 95575 spikes found.
2017-01-18 22:24:01  main:222                Processing chunk <Chunk (76101100/78942960), recording 0>...
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2017-01-18 22:24:33  progressbar:97          97% complete, 49m 5s elapsed, 1m 30s remaining. 96421 spikes found.
2017-01-18 22:24:33  main:222                Processing chunk <Chunk (76593600/78942960), recording 0>...
2017-01-18 22:24:33  main:222                Processing chunk <Chunk (76613300/78942960), recording 0>...
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2017-01-18 22:25:03  progressbar:97          97% complete, 49m 35s elapsed, 1m 14s remaining. 97172 spikes found.
2017-01-18 22:25:03  main:222                Processing chunk <Chunk (77027000/78942960), recording 0>...
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2017-01-18 22:25:33  main:222                Processing chunk <Chunk (77401300/78942960), recording 0>...
2017-01-18 22:25:33  progressbar:97          98% complete, 50m 6s elapsed, 59s remaining. 97956 spikes found.
2017-01-18 22:25:33  main:222                Processing chunk <Chunk (77421000/78942960), recording 0>...
2017-01-18 22:25:34  main:222                Processing chunk <Chunk (77440700/78942960), recording 0>...
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2017-01-18 22:26:04  progressbar:97          98% complete, 50m 36s elapsed, 40s remaining. 98523 spikes found.
2017-01-18 22:26:04  main:222                Processing chunk <Chunk (77913500/78942960), recording 0>...
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2017-01-18 22:26:35  progressbar:97          99% complete, 51m 7s elapsed, 12s remaining. 98737 spikes found.
2017-01-18 22:26:35  main:222                Processing chunk <Chunk (78622700/78942960), recording 0>...
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2017-01-18 22:26:49  progressbar:97          100% complete, 51m 21s elapsed, 0s remaining. 98786 spikes found.