2017-02-08 18:43:21  main:187                Starting SpikeDetekt version 0.3.0 on <DatRawReader /mnt/packrat/userdirs/david/zpool1/DT6/20170207_2268um_1476um_170207_232846/20170207_2268um_1476um_170207_232846.dat>
2017-02-08 18:43:21  main:188                Parameters: 
{'__doc__': 'Contain default parameters.',
 'canonical_pcs': None,
 'chunk_overlap': 300,
 'chunk_size': 20000,
 'connected_component_join_size': 1,
 'detect_spikes': 'negative',
 'diagnostics_path': None,
 'excerpt_size': 20000,
 'experiment_name': '/mnt/packrat/userdirs/david/zpool1/DT6/20170207_2268um_1476um_170207_232846/5/20170207_2268um_1476um_170207_232846_sh5',
 'extract_s_after': 16,
 'extract_s_before': 16,
 'features_contiguous': True,
 'filter_butter_order': 3,
 'filter_high': 9500.0,
 'filter_low': 500.0,
 'nbits': 16,
 'nchannels': 96,
 'nexcerpts': 60,
 'nfeatures_per_channel': 6,
 'pca_nwaveforms_max': 20000,
 'prb_file': '5.prb',
 'raw_data_files': ['/mnt/packrat/userdirs/david/zpool1/DT6/20170207_2268um_1476um_170207_232846/20170207_2268um_1476um_170207_232846.dat'],
 'sample_rate': 20000.0,
 'save_high': False,
 'save_low': False,
 'save_raw': False,
 'threshold_strong_std_factor': 4.5,
 'threshold_weak_std_factor': 2.0,
 'use_single_threshold': False,
 'voltage_gain': 10.0,
 'waveforms_nsamples': 32,
 'weight_power': 2}
2017-02-08 18:43:38  main:200                Threshold: DoubleThreshold(strong=array([ 252.70047018,  262.68575525,  267.18116844,  254.74043991,
        262.93502992,  257.81565088,  255.1921133 ,  259.2429552 ,
        260.77795267,  275.55461525,  278.82301708,  277.30357048,
        271.40719657,  281.19887305,  279.59584755,  270.44887864,
        290.60262724,  295.33368234,  290.96611256,  267.47062896,
        275.83379492,  277.36236068,  274.3715736 ,  273.9857133 ,
        261.61737846,  250.5402136 ,  265.00640834,  272.44361248,
        256.32034888,  243.03022119,  275.15113419,  281.35342698,
        208.19647706,  217.57979334,  220.15066185,  209.60501188,
        222.22049905,  250.39014715,  248.66626562,  155.0992036 ,
        210.72361593,  222.79030815,  224.85152973,  238.98915572,
        244.12037418,  210.05672227,  202.32036484,  224.85816786,
        209.09923103,  203.56981203,  228.52672775,  224.37597134,
        241.89437587,  236.26021962,  251.96674939,  249.05296791,
        229.33494528,  239.75229642,  227.09398379,  224.8803643 ,
        253.39640622,  233.40164181,  267.94844511,  274.40857145,
        150.99599681,  184.71964801,  276.50850709,  258.4072985 ,
        243.36664114,  238.86525386,  252.79024588,  258.4067713 ,
        259.96085407,  257.83239781,  231.42158361,  233.16776385,
        233.36158867,  223.80892283,  214.3575507 ,  223.62491663,
        269.79060406,  269.22510953,  269.42728791,  257.48870505,
        271.92055647,  271.79106535,  269.25657596,  275.81064098,
        266.25848886,  264.64238803,  222.76531914,  242.3411503 ,
        254.74760001,  242.63172715,  249.47194063,  253.5364941 ]), weak=array([ 112.31132008,  116.74922456,  118.74718597,  113.21797329,
        116.8600133 ,  114.58473373,  113.41871702,  115.2190912 ,
        115.9013123 ,  122.46871789,  123.92134093,  123.24603132,
        120.6254207 ,  124.97727691,  124.26482114,  120.19950162,
        129.15672322,  131.25941437,  129.31827225,  118.87583509,
        122.59279774,  123.2721603 ,  121.9429216 ,  121.77142813,
        116.27439043,  111.35120605,  117.78062593,  121.08604999,
        113.92015506,  108.01343164,  122.28939297,  125.04596755,
         92.53176758,   96.70213037,   97.8447386 ,   93.15778306,
         98.76466625,  111.28450984,  110.51834028,   68.93297938,
         93.65494041,   99.01791473,   99.93401321,  106.21740254,
        108.49794408,   93.35854323,   89.92016215,   99.9369635 ,
         92.93299157,   90.47547202,  101.56743456,   99.72265393,
        107.5086115 ,  105.00454205,  111.98522195,  110.69020796,
        101.92664235,  106.55657618,  100.93065946,   99.94682858,
        112.62062499,  103.73406303,  119.08819782,  121.95936509,
         67.10933192,   82.09762134,  122.89266982,  114.84768822,
        108.16295162,  106.16233505,  112.35122039,  114.84745391,
        115.53815737,  114.59217681,  102.85403716,  103.63011726,
        103.71626163,   99.47063237,   95.27002253,   99.38885183,
        119.90693514,  119.65560424,  119.74546129,  114.43942447,
        120.85358065,  120.79602904,  119.66958932,  122.5825071 ,
        118.33710616,  117.61883912,   99.00680851,  107.70717791,
        113.22115556,  107.83632318,  110.87641806,  112.68288627]))
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2017-02-08 18:44:09  progressbar:97          1% complete, 30s elapsed, 25m 21s remaining. 632 spikes found.
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2017-02-08 18:44:42  progressbar:97          3% complete, 1m 2s elapsed, 26m 7s remaining. 2392 spikes found.
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2017-02-08 18:46:43  progressbar:97          9% complete, 3m 4s elapsed, 27m 50s remaining. 3575 spikes found.
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2017-02-08 18:47:13  progressbar:97          11% complete, 3m 34s elapsed, 28m 39s remaining. 3698 spikes found.
2017-02-08 18:47:13  main:222                Processing chunk <Chunk (9278700/83743200), recording 0>...
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2017-02-08 18:47:43  progressbar:97          12% complete, 4m 4s elapsed, 28m 57s remaining. 3841 spikes found.
2017-02-08 18:47:43  main:222                Processing chunk <Chunk (10322800/83743200), recording 0>...
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2017-02-08 18:48:13  progressbar:97          13% complete, 4m 34s elapsed, 29m 1s remaining. 4027 spikes found.
2017-02-08 18:48:13  main:222                Processing chunk <Chunk (11406300/83743200), recording 0>...
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2017-02-08 18:48:44  progressbar:97          14% complete, 5m 5s elapsed, 28m 57s remaining. 4311 spikes found.
2017-02-08 18:48:44  main:222                Processing chunk <Chunk (12509500/83743200), recording 0>...
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2017-02-08 18:49:15  progressbar:97          16% complete, 5m 35s elapsed, 29m 5s remaining. 4813 spikes found.
2017-02-08 18:49:15  main:222                Processing chunk <Chunk (13494500/83743200), recording 0>...
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2017-02-08 18:49:45  progressbar:97          17% complete, 6m 5s elapsed, 29m 13s remaining. 5070 spikes found.
2017-02-08 18:49:45  main:222                Processing chunk <Chunk (14440100/83743200), recording 0>...
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2017-02-08 18:50:15  progressbar:97          18% complete, 6m 35s elapsed, 28m 57s remaining. 5313 spikes found.
2017-02-08 18:50:15  main:222                Processing chunk <Chunk (15543300/83743200), recording 0>...
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2017-02-08 18:50:45  progressbar:97          19% complete, 7m 6s elapsed, 29m 0s remaining. 5529 spikes found.
2017-02-08 18:50:45  main:222                Processing chunk <Chunk (16488900/83743200), recording 0>...
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2017-02-08 18:52:17  progressbar:97          23% complete, 8m 37s elapsed, 28m 34s remaining. 6186 spikes found.
2017-02-08 18:52:17  main:222                Processing chunk <Chunk (19424200/83743200), recording 0>...
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2017-02-08 18:52:49  progressbar:97          24% complete, 9m 8s elapsed, 27m 44s remaining. 6657 spikes found.
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2017-02-08 18:53:20  progressbar:97          26% complete, 9m 39s elapsed, 26m 47s remaining. 6922 spikes found.
2017-02-08 18:53:20  main:222                Processing chunk <Chunk (22201900/83743200), recording 0>...
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2017-02-08 18:53:52  progressbar:97          27% complete, 10m 11s elapsed, 26m 27s remaining. 7201 spikes found.
2017-02-08 18:53:52  main:222                Processing chunk <Chunk (23285400/83743200), recording 0>...
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2017-02-08 18:54:20  progressbar:97          29% complete, 10m 41s elapsed, 25m 31s remaining. 7539 spikes found.
2017-02-08 18:54:20  main:222                Processing chunk <Chunk (24723500/83743200), recording 0>...
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2017-02-08 18:59:53  progressbar:97          50% complete, 16m 14s elapsed, 16m 11s remaining. 11287 spikes found.
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2017-02-08 19:00:54  progressbar:97          52% complete, 17m 15s elapsed, 15m 29s remaining. 12096 spikes found.
2017-02-08 19:00:54  main:222                Processing chunk <Chunk (44128000/83743200), recording 0>...
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2017-02-08 19:01:24  progressbar:97          53% complete, 17m 45s elapsed, 15m 19s remaining. 12956 spikes found.
2017-02-08 19:01:24  main:222                Processing chunk <Chunk (44955400/83743200), recording 0>...
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2017-02-08 19:01:54  progressbar:97          54% complete, 18m 15s elapsed, 15m 6s remaining. 13440 spikes found.
2017-02-08 19:01:54  main:222                Processing chunk <Chunk (45822200/83743200), recording 0>...
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2017-02-08 19:02:25  progressbar:97          55% complete, 18m 46s elapsed, 14m 56s remaining. 14049 spikes found.
2017-02-08 19:02:25  main:222                Processing chunk <Chunk (46629900/83743200), recording 0>...
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2017-02-08 19:02:56  progressbar:97          56% complete, 19m 16s elapsed, 14m 44s remaining. 14912 spikes found.
2017-02-08 19:02:56  main:222                Processing chunk <Chunk (47457300/83743200), recording 0>...
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2017-02-08 19:03:26  progressbar:97          57% complete, 19m 47s elapsed, 14m 39s remaining. 15929 spikes found.
2017-02-08 19:03:26  main:222                Processing chunk <Chunk (48107400/83743200), recording 0>...
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2017-02-08 19:03:56  progressbar:97          58% complete, 20m 17s elapsed, 14m 32s remaining. 16658 spikes found.
2017-02-08 19:03:56  main:222                Processing chunk <Chunk (48796900/83743200), recording 0>...
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2017-02-08 19:04:27  progressbar:97          59% complete, 20m 48s elapsed, 14m 23s remaining. 17063 spikes found.
2017-02-08 19:04:27  main:222                Processing chunk <Chunk (49506100/83743200), recording 0>...
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2017-02-08 19:04:58  progressbar:97          60% complete, 21m 18s elapsed, 14m 11s remaining. 17680 spikes found.
2017-02-08 19:04:58  main:222                Processing chunk <Chunk (50274400/83743200), recording 0>...
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2017-02-08 19:05:28  progressbar:97          60% complete, 21m 49s elapsed, 14m 3s remaining. 18611 spikes found.
2017-02-08 19:05:28  main:222                Processing chunk <Chunk (50944200/83743200), recording 0>...
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2017-02-08 19:05:59  progressbar:97          61% complete, 22m 19s elapsed, 13m 54s remaining. 19506 spikes found.
2017-02-08 19:05:59  main:222                Processing chunk <Chunk (51594300/83743200), recording 0>...
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2017-02-08 19:06:29  main:222                Processing chunk <Chunk (52421700/83743200), recording 0>...
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2017-02-08 19:06:59  main:222                Processing chunk <Chunk (53505200/83743200), recording 0>...
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2017-02-08 19:07:29  progressbar:97          65% complete, 23m 50s elapsed, 12m 47s remaining. 23003 spikes found.
2017-02-08 19:07:29  main:222                Processing chunk <Chunk (54490200/83743200), recording 0>...
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2017-02-08 19:08:00  progressbar:97          66% complete, 24m 20s elapsed, 12m 16s remaining. 23786 spikes found.
2017-02-08 19:08:00  main:222                Processing chunk <Chunk (55672200/83743200), recording 0>...
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2017-02-08 19:08:30  progressbar:97          67% complete, 24m 51s elapsed, 11m 45s remaining. 24680 spikes found.
2017-02-08 19:08:30  main:222                Processing chunk <Chunk (56854200/83743200), recording 0>...
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2017-02-08 19:09:01  progressbar:97          68% complete, 25m 21s elapsed, 11m 26s remaining. 25914 spikes found.
2017-02-08 19:09:01  main:222                Processing chunk <Chunk (57721000/83743200), recording 0>...
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2017-02-08 19:09:31  progressbar:97          70% complete, 25m 52s elapsed, 10m 58s remaining. 27018 spikes found.
2017-02-08 19:09:31  main:222                Processing chunk <Chunk (58804500/83743200), recording 0>...
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2017-02-08 19:10:01  progressbar:97          71% complete, 26m 22s elapsed, 10m 41s remaining. 27843 spikes found.
2017-02-08 19:10:01  main:222                Processing chunk <Chunk (59572800/83743200), recording 0>...
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2017-02-08 19:10:31  progressbar:97          71% complete, 26m 52s elapsed, 10m 29s remaining. 28658 spikes found.
2017-02-08 19:10:31  main:222                Processing chunk <Chunk (60242600/83743200), recording 0>...
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2017-02-08 19:11:02  progressbar:97          72% complete, 27m 23s elapsed, 10m 12s remaining. 29133 spikes found.
2017-02-08 19:11:02  main:222                Processing chunk <Chunk (61010900/83743200), recording 0>...
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2017-02-08 19:11:33  progressbar:97          73% complete, 27m 53s elapsed, 9m 58s remaining. 29712 spikes found.
2017-02-08 19:11:33  main:222                Processing chunk <Chunk (61700400/83743200), recording 0>...
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2017-02-08 19:12:03  progressbar:97          74% complete, 28m 24s elapsed, 9m 38s remaining. 30148 spikes found.
2017-02-08 19:12:03  main:222                Processing chunk <Chunk (62527800/83743200), recording 0>...
2017-02-08 19:12:03  main:222                Processing chunk <Chunk (62547500/83743200), recording 0>...
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2017-02-08 19:12:33  progressbar:97          75% complete, 28m 54s elapsed, 9m 15s remaining. 30290 spikes found.
2017-02-08 19:12:33  main:222                Processing chunk <Chunk (63434000/83743200), recording 0>...
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2017-02-08 19:13:03  progressbar:97          76% complete, 29m 24s elapsed, 8m 54s remaining. 30392 spikes found.
2017-02-08 19:13:03  main:222                Processing chunk <Chunk (64261400/83743200), recording 0>...
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2017-02-08 19:13:33  progressbar:97          77% complete, 29m 54s elapsed, 8m 39s remaining. 30829 spikes found.
2017-02-08 19:13:33  main:222                Processing chunk <Chunk (64950900/83743200), recording 0>...
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2017-02-08 19:16:05  progressbar:97          83% complete, 32m 26s elapsed, 6m 36s remaining. 33718 spikes found.
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2017-02-08 19:16:35  progressbar:97          84% complete, 32m 56s elapsed, 6m 13s remaining. 34414 spikes found.
2017-02-08 19:16:35  main:222                Processing chunk <Chunk (70427500/83743200), recording 0>...
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2017-02-08 19:17:06  progressbar:97          85% complete, 33m 27s elapsed, 5m 53s remaining. 35129 spikes found.
2017-02-08 19:17:06  main:222                Processing chunk <Chunk (71195800/83743200), recording 0>...
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2017-02-08 19:17:36  progressbar:97          86% complete, 33m 57s elapsed, 5m 30s remaining. 35629 spikes found.
2017-02-08 19:17:36  main:222                Processing chunk <Chunk (72042900/83743200), recording 0>...
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2017-02-08 19:18:06  progressbar:97          87% complete, 34m 27s elapsed, 5m 3s remaining. 35792 spikes found.
2017-02-08 19:18:06  main:222                Processing chunk <Chunk (73008200/83743200), recording 0>...
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2017-02-08 19:18:36  progressbar:97          88% complete, 34m 57s elapsed, 4m 42s remaining. 36670 spikes found.
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2017-02-08 19:19:38  progressbar:97          90% complete, 35m 59s elapsed, 3m 57s remaining. 37962 spikes found.
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2017-02-08 19:20:08  progressbar:97          90% complete, 36m 29s elapsed, 3m 36s remaining. 38674 spikes found.
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2017-02-08 19:20:38  progressbar:97          91% complete, 36m 59s elapsed, 3m 17s remaining. 39591 spikes found.
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2017-02-08 19:21:09  progressbar:97          92% complete, 37m 30s elapsed, 2m 56s remaining. 40467 spikes found.
2017-02-08 19:21:09  main:222                Processing chunk <Chunk (77657400/83743200), recording 0>...
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2017-02-08 19:21:39  progressbar:97          93% complete, 38m 0s elapsed, 2m 37s remaining. 41643 spikes found.
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2017-02-08 19:24:10  progressbar:97          99% complete, 40m 31s elapsed, 8s remaining. 45542 spikes found.
2017-02-08 19:24:10  main:222                Processing chunk <Chunk (83449200/83743200), recording 0>...
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2017-02-08 19:24:19  progressbar:97          100% complete, 40m 40s elapsed, 0s remaining. 45635 spikes found.