2017-03-07 23:01:05  main:187                Starting SpikeDetekt version 0.3.0 on <DatRawReader /mnt/packrat/userdirs/david/zpool1/DT6/20170301_2546um_1368um_170301_185440/20170301_2546um_1368um_170301_185440.dat>
2017-03-07 23:01:05  main:188                Parameters: 
{'__doc__': 'Contain default parameters.',
 'canonical_pcs': None,
 'chunk_overlap': 300,
 'chunk_size': 20000,
 'connected_component_join_size': 1,
 'detect_spikes': 'negative',
 'diagnostics_path': None,
 'excerpt_size': 20000,
 'experiment_name': '/mnt/packrat/userdirs/david/zpool1/DT6/20170301_2546um_1368um_170301_185440/3/20170301_2546um_1368um_170301_185440_sh3',
 'extract_s_after': 16,
 'extract_s_before': 16,
 'features_contiguous': True,
 'filter_butter_order': 3,
 'filter_high': 9500.0,
 'filter_low': 500.0,
 'nbits': 16,
 'nchannels': 96,
 'nexcerpts': 60,
 'nfeatures_per_channel': 6,
 'pca_nwaveforms_max': 20000,
 'prb_file': '3.prb',
 'raw_data_files': ['/mnt/packrat/userdirs/david/zpool1/DT6/20170301_2546um_1368um_170301_185440/20170301_2546um_1368um_170301_185440.dat'],
 'sample_rate': 20000.0,
 'save_high': False,
 'save_low': False,
 'save_raw': False,
 'threshold_strong_std_factor': 4.5,
 'threshold_weak_std_factor': 2.0,
 'use_single_threshold': False,
 'voltage_gain': 10.0,
 'waveforms_nsamples': 32,
 'weight_power': 2}
2017-03-07 23:01:28  main:200                Threshold: DoubleThreshold(strong=array([ 260.85008589,  275.41643955,  280.73150526,  259.97706024,
        281.80220963,  275.88829286,  269.35379907,  260.46893625,
        273.47436834,  290.71709766,  292.16178854,  298.90567523,
        276.03591853,  297.81385605,  295.59683934,  292.89956566,
        299.48199692,  309.26855142,  304.24078167,  299.6957828 ,
        272.77425922,  267.79938691,  298.05226883,  289.9644833 ,
        278.2904554 ,  278.97953772,  274.00261485,  280.11581663,
        280.78142224,  273.47057236,  288.13022133,  288.83197062,
        254.29022897,  272.46797825,  276.47243752,  262.43550952,
        300.25154187,  288.71618652,  204.04636012,  174.79031836,
        185.81809835,  199.87814978,  205.41593536,  209.02964149,
        256.69439641,  254.95149228,  243.70085081,  278.037141  ,
        237.97654364,  245.43031224,  253.21098384,  248.59841053,
        262.97271938,  260.92992209,  272.99714051,  266.87840296,
        270.25861372,  267.14944833,  277.06173801,  276.25178847,
        284.15608832,  283.27930274,  286.57788648,  283.36566734,
        151.59111093,  160.60584353,  208.55132498,  290.57119425,
        192.47574374,  201.5518092 ,  214.02142099,  285.30753877,
        209.05658933,  229.58144559,  241.29946716,  237.50110083,
        250.08793293,  260.73349511,  256.8074756 ,  250.86833535,
        283.43979462,  274.74450345,  290.20464381,  292.66960407,
        294.88882667,  294.29777175,  284.29106764,  298.13738626,
        281.19912997,  285.21651257,  266.95913688,  276.05224826,
        279.22611639,  288.98303151,  106.19436429,  274.52338595]), weak=array([ 115.93337151,  122.40730647,  124.76955789,  115.54536011,
        125.2454265 ,  122.61701905,  119.71279958,  115.76397167,
        121.54416371,  129.20759896,  129.8496838 ,  132.84696677,
        122.68263046,  132.3617138 ,  131.37637304,  130.17758474,
        133.10310974,  137.45268952,  135.21812519,  133.19812569,
        121.2330041 ,  119.02194974,  132.46767504,  128.87310369,
        123.68464684,  123.99090565,  121.77893993,  124.4959185 ,
        124.79174322,  121.5424766 ,  128.05787615,  128.36976472,
        113.01787954,  121.09687922,  122.8766389 ,  116.63800423,
        133.44512972,  128.31830512,   90.68727117,   77.68458594,
         82.58582149,   88.83473323,   91.29597127,   92.90206288,
        114.0863984 ,  113.31177435,  108.31148925,  123.57206267,
        105.76735273,  109.08013877,  112.53821504,  110.48818246,
        116.87676417,  115.96885426,  121.33206245,  118.61262354,
        120.11493943,  118.73308815,  123.13855023,  122.77857265,
        126.29159481,  125.90191233,  127.36794955,  125.9402966 ,
         67.37382708,   71.3803749 ,   92.68947777,  129.142753  ,
         85.54477499,   89.57858187,   95.12063155,  126.80335056,
         92.9140397 ,  102.03619804,  107.24420763,  105.55604481,
        111.15019241,  115.88155338,  114.13665582,  111.49703793,
        125.97324205,  122.1086682 ,  128.97984169,  130.07537959,
        131.06170074,  130.79900967,  126.35158562,  132.50550501,
        124.9773911 ,  126.76289448,  118.64850528,  122.68988812,
        124.10049618,  128.43690289,   47.19749524,  122.01039376]))
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2017-03-07 23:02:29  progressbar:97          4% complete, 1m 1s elapsed, 23m 14s remaining. 3692 spikes found.
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2017-03-07 23:05:31  progressbar:97          14% complete, 4m 3s elapsed, 24m 36s remaining. 15071 spikes found.
2017-03-07 23:05:31  main:222                Processing chunk <Chunk (8293700/58619520), recording 0>...
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2017-03-07 23:06:02  progressbar:97          15% complete, 4m 34s elapsed, 25m 5s remaining. 17120 spikes found.
2017-03-07 23:06:02  main:222                Processing chunk <Chunk (9042300/58619520), recording 0>...
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2017-03-07 23:06:32  progressbar:97          16% complete, 5m 4s elapsed, 25m 53s remaining. 18922 spikes found.
2017-03-07 23:06:32  main:222                Processing chunk <Chunk (9613600/58619520), recording 0>...
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2017-03-07 23:07:03  progressbar:97          18% complete, 5m 35s elapsed, 25m 25s remaining. 19484 spikes found.
2017-03-07 23:07:03  main:222                Processing chunk <Chunk (10559200/58619520), recording 0>...
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2017-03-07 23:07:33  progressbar:97          19% complete, 6m 5s elapsed, 25m 14s remaining. 20485 spikes found.
2017-03-07 23:07:33  main:222                Processing chunk <Chunk (11386600/58619520), recording 0>...
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2017-03-07 23:08:03  progressbar:97          20% complete, 6m 35s elapsed, 25m 8s remaining. 21891 spikes found.
2017-03-07 23:08:03  main:222                Processing chunk <Chunk (12174600/58619520), recording 0>...
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2017-03-07 23:08:33  progressbar:97          22% complete, 7m 5s elapsed, 25m 4s remaining. 23253 spikes found.
2017-03-07 23:08:33  main:222                Processing chunk <Chunk (12923200/58619520), recording 0>...
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2017-03-07 23:09:04  progressbar:97          23% complete, 7m 36s elapsed, 25m 8s remaining. 25030 spikes found.
2017-03-07 23:09:04  main:222                Processing chunk <Chunk (13612700/58619520), recording 0>...
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2017-03-07 23:09:34  progressbar:97          24% complete, 8m 6s elapsed, 25m 8s remaining. 26823 spikes found.
2017-03-07 23:09:34  main:222                Processing chunk <Chunk (14302200/58619520), recording 0>...
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2017-03-07 23:10:05  progressbar:97          25% complete, 8m 36s elapsed, 25m 9s remaining. 28516 spikes found.
2017-03-07 23:10:05  main:222                Processing chunk <Chunk (14952300/58619520), recording 0>...
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2017-03-07 23:10:35  progressbar:97          26% complete, 9m 7s elapsed, 25m 9s remaining. 30430 spikes found.
2017-03-07 23:10:35  main:222                Processing chunk <Chunk (15602400/58619520), recording 0>...
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2017-03-07 23:11:06  progressbar:97          27% complete, 9m 38s elapsed, 25m 7s remaining. 32358 spikes found.
2017-03-07 23:11:06  main:222                Processing chunk <Chunk (16252500/58619520), recording 0>...
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2017-03-07 23:11:36  progressbar:97          28% complete, 10m 8s elapsed, 24m 57s remaining. 34196 spikes found.
2017-03-07 23:11:36  main:222                Processing chunk <Chunk (16942000/58619520), recording 0>...
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2017-03-07 23:12:07  progressbar:97          30% complete, 10m 39s elapsed, 24m 46s remaining. 36056 spikes found.
2017-03-07 23:12:07  main:222                Processing chunk <Chunk (17631500/58619520), recording 0>...
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2017-03-07 23:12:38  progressbar:97          31% complete, 11m 10s elapsed, 24m 36s remaining. 38224 spikes found.
2017-03-07 23:12:38  main:222                Processing chunk <Chunk (18301300/58619520), recording 0>...
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2017-03-07 23:13:08  progressbar:97          32% complete, 11m 40s elapsed, 24m 21s remaining. 40106 spikes found.
2017-03-07 23:13:08  main:222                Processing chunk <Chunk (18990800/58619520), recording 0>...
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2017-03-07 23:13:38  progressbar:97          33% complete, 12m 10s elapsed, 24m 5s remaining. 41983 spikes found.
2017-03-07 23:13:38  main:222                Processing chunk <Chunk (19680300/58619520), recording 0>...
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2017-03-07 23:14:09  progressbar:97          34% complete, 12m 40s elapsed, 23m 44s remaining. 43739 spikes found.
2017-03-07 23:14:09  main:222                Processing chunk <Chunk (20409200/58619520), recording 0>...
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2017-03-07 23:14:39  progressbar:97          35% complete, 13m 11s elapsed, 23m 33s remaining. 45724 spikes found.
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2017-03-07 23:15:10  progressbar:97          37% complete, 13m 42s elapsed, 23m 16s remaining. 47491 spikes found.
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2017-03-07 23:15:40  progressbar:97          38% complete, 14m 12s elapsed, 23m 0s remaining. 49323 spikes found.
2017-03-07 23:15:40  main:222                Processing chunk <Chunk (22379200/58619520), recording 0>...
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2017-03-07 23:16:11  progressbar:97          39% complete, 14m 42s elapsed, 22m 38s remaining. 50809 spikes found.
2017-03-07 23:16:11  main:222                Processing chunk <Chunk (23088400/58619520), recording 0>...
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2017-03-07 23:16:41  progressbar:97          40% complete, 15m 12s elapsed, 22m 1s remaining. 51482 spikes found.
2017-03-07 23:16:41  main:222                Processing chunk <Chunk (23955200/58619520), recording 0>...
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2017-03-07 23:17:11  progressbar:97          42% complete, 15m 43s elapsed, 21m 24s remaining. 52301 spikes found.
2017-03-07 23:17:11  main:222                Processing chunk <Chunk (24822000/58619520), recording 0>...
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2017-03-07 23:17:41  progressbar:97          43% complete, 16m 13s elapsed, 20m 42s remaining. 52849 spikes found.
2017-03-07 23:17:41  main:222                Processing chunk <Chunk (25747900/58619520), recording 0>...
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2017-03-07 23:19:12  progressbar:97          48% complete, 17m 44s elapsed, 18m 54s remaining. 55317 spikes found.
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2017-03-07 23:19:42  progressbar:97          50% complete, 18m 14s elapsed, 18m 13s remaining. 56060 spikes found.
2017-03-07 23:19:42  main:222                Processing chunk <Chunk (29313600/58619520), recording 0>...
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2017-03-07 23:20:13  progressbar:97          51% complete, 18m 44s elapsed, 17m 41s remaining. 57109 spikes found.
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2017-03-07 23:23:14  progressbar:97          60% complete, 21m 46s elapsed, 14m 15s remaining. 62991 spikes found.
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2017-03-07 23:23:44  progressbar:97          61% complete, 22m 16s elapsed, 13m 53s remaining. 64656 spikes found.
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2017-03-07 23:24:15  progressbar:97          62% complete, 22m 47s elapsed, 13m 34s remaining. 66326 spikes found.
2017-03-07 23:24:15  main:222                Processing chunk <Chunk (36740500/58619520), recording 0>...
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2017-03-07 23:24:45  progressbar:97          63% complete, 23m 17s elapsed, 13m 14s remaining. 68138 spikes found.
2017-03-07 23:24:45  main:222                Processing chunk <Chunk (37370900/58619520), recording 0>...
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2017-03-07 23:25:16  progressbar:97          64% complete, 23m 48s elapsed, 12m 53s remaining. 69665 spikes found.
2017-03-07 23:25:16  main:222                Processing chunk <Chunk (38021000/58619520), recording 0>...
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2017-03-07 23:25:46  progressbar:97          66% complete, 24m 18s elapsed, 12m 29s remaining. 71053 spikes found.
2017-03-07 23:25:46  main:222                Processing chunk <Chunk (38710500/58619520), recording 0>...
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2017-03-07 23:26:16  progressbar:97          67% complete, 24m 48s elapsed, 12m 3s remaining. 72448 spikes found.
2017-03-07 23:26:16  main:222                Processing chunk <Chunk (39439400/58619520), recording 0>...
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2017-03-07 23:27:17  progressbar:97          69% complete, 25m 49s elapsed, 11m 11s remaining. 76486 spikes found.
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2017-03-07 23:27:47  progressbar:97          71% complete, 26m 19s elapsed, 10m 44s remaining. 78489 spikes found.
2017-03-07 23:27:47  main:222                Processing chunk <Chunk (41626100/58619520), recording 0>...
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2017-03-07 23:28:17  progressbar:97          72% complete, 26m 49s elapsed, 10m 18s remaining. 80526 spikes found.
2017-03-07 23:28:17  main:222                Processing chunk <Chunk (42355000/58619520), recording 0>...
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2017-03-07 23:28:47  progressbar:97          73% complete, 27m 19s elapsed, 9m 47s remaining. 82065 spikes found.
2017-03-07 23:28:47  main:222                Processing chunk <Chunk (43162700/58619520), recording 0>...
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2017-03-07 23:33:20  progressbar:97          86% complete, 31m 52s elapsed, 4m 48s remaining. 95370 spikes found.
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2017-03-07 23:33:50  progressbar:97          88% complete, 32m 22s elapsed, 4m 13s remaining. 97282 spikes found.
2017-03-07 23:33:50  main:222                Processing chunk <Chunk (51850400/58619520), recording 0>...
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2017-03-07 23:34:21  progressbar:97          90% complete, 32m 53s elapsed, 3m 27s remaining. 97959 spikes found.
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2017-03-07 23:37:25  progressbar:97          98% complete, 35m 57s elapsed, 29s remaining. 109003 spikes found.
2017-03-07 23:37:25  main:222                Processing chunk <Chunk (57819500/58619520), recording 0>...
2017-03-07 23:37:26  main:222                Processing chunk <Chunk (57839200/58619520), recording 0>...
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2017-03-07 23:37:28  main:222                Processing chunk <Chunk (57878600/58619520), recording 0>...
2017-03-07 23:37:29  main:222                Processing chunk <Chunk (57898300/58619520), recording 0>...
2017-03-07 23:37:30  main:222                Processing chunk <Chunk (57918000/58619520), recording 0>...
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2017-03-07 23:37:36  main:222                Processing chunk <Chunk (58036200/58619520), recording 0>...
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2017-03-07 23:37:39  main:222                Processing chunk <Chunk (58075600/58619520), recording 0>...
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2017-03-07 23:37:55  progressbar:97          99% complete, 36m 27s elapsed, 7s remaining. 110740 spikes found.
2017-03-07 23:37:55  main:222                Processing chunk <Chunk (58410500/58619520), recording 0>...
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2017-03-07 23:38:06  progressbar:97          100% complete, 36m 38s elapsed, 0s remaining. 111460 spikes found.