2017-03-15 20:35:29  main:187                Starting SpikeDetekt version 0.3.0 on <DatRawReader /mnt/packrat/userdirs/david/zpool1/DT7/20170315_288um_0um_170315_191240/20170315_288um_0um_170315_191240.dat>
2017-03-15 20:35:29  main:188                Parameters: 
{'__doc__': 'Contain default parameters.',
 'canonical_pcs': None,
 'chunk_overlap': 300,
 'chunk_size': 20000,
 'connected_component_join_size': 1,
 'detect_spikes': 'negative',
 'diagnostics_path': None,
 'excerpt_size': 20000,
 'experiment_name': '/mnt/packrat/userdirs/david/zpool1/DT7/20170315_288um_0um_170315_191240/3/20170315_288um_0um_170315_191240_sh3',
 'extract_s_after': 16,
 'extract_s_before': 16,
 'features_contiguous': True,
 'filter_butter_order': 3,
 'filter_high': 9500.0,
 'filter_low': 500.0,
 'nbits': 16,
 'nchannels': 128,
 'nexcerpts': 60,
 'nfeatures_per_channel': 6,
 'pca_nwaveforms_max': 20000,
 'prb_file': '3.prb',
 'raw_data_files': ['/mnt/packrat/userdirs/david/zpool1/DT7/20170315_288um_0um_170315_191240/20170315_288um_0um_170315_191240.dat'],
 'sample_rate': 20000.0,
 'save_high': False,
 'save_low': False,
 'save_raw': False,
 'threshold_strong_std_factor': 4.5,
 'threshold_weak_std_factor': 2.0,
 'use_single_threshold': False,
 'voltage_gain': 10.0,
 'waveforms_nsamples': 32,
 'weight_power': 2}
2017-03-15 20:36:04  main:200                Threshold: DoubleThreshold(strong=array([ 260.19027208,  280.57709046,  284.92992215,  299.98878688,
        266.36745986,  295.72638777,  289.74369657,  288.0252028 ,
        270.87591463,  272.76269645,  250.06032539,  265.49335231,
        276.23971016,  281.06205648,  279.72441947,  261.92849693,
        294.20399224,  289.42454531,  327.39248562,  320.57226721,
        275.70253725,  305.09813051,  290.76954541,  288.44539539,
        304.05628972,  332.23094572,  290.96059306,  295.56164663,
        283.24344331,  281.03608046,  293.59431479,  284.57228502,
        295.12074165,  291.85917304,  286.25232047,  279.90306668,
        283.44057971,  279.93639838,  289.52839794,  289.3689343 ,
        281.87256043,  275.37205146,  286.27767916,  281.58429953,
        309.67084879,  296.66151001,  296.43569449,  293.31985497,
        280.31730004,  272.35539217,  278.51869074,  282.94440557,
        269.90578303,  262.54774456,  270.70707189,  266.49312338,
        268.34142784,  324.29131185,  261.29667188,  281.38528712,
        264.18558775,  287.72489819,  273.72582362,  270.73164271,
        288.35214284,  292.80936651,  291.19398691,  286.79351939,
        286.74079066,  276.52388413,  293.39954024,  286.97840383,
        292.28475059,  289.60452975,  292.1941121 ,  287.40854887,
        297.44286137,  275.90700195,  283.26971643,  293.04213624,
        278.42016625,  293.25578885,  301.35537614,  296.34296756,
        294.07244581,  288.88456648,  294.09271301,  296.48864024,
        291.99652901,  281.72484564,  300.83386145,  296.48499765,
        286.17184308,  284.72885963,  309.91958483,  303.76007399,
        300.61406703,  307.53872395,  287.08586552,  349.0508923 ,
        285.27910479,  365.48035734,  293.90530596,  433.85382922,
        447.45495715,  433.44251012,  421.18531195,  421.19294196,
        440.91626992,  383.24303653,  373.86751434,  388.3927173 ,
        304.67948731,  286.3891655 ,  359.55607103,  326.19317042,
        424.19247644,  435.91437584,  405.8448671 ,  391.86866863,
        406.26927337,  445.61198811,  369.23221372,  380.38660246,
        360.94207143,  284.35624734,  300.82667097,  304.33722303]), weak=array([ 115.64012093,  124.70092909,  126.63552095,  133.32834972,
        118.38553772,  131.43395012,  128.77497625,  128.01120124,
        120.38929539,  121.22786509,  111.13792239,  117.99704547,
        122.77320451,  124.91646955,  124.32196421,  116.4126653 ,
        130.75732988,  128.63313125,  145.50777139,  142.47656321,
        122.534461  ,  135.59916912,  129.23090907,  128.19795351,
        135.13612876,  147.6581981 ,  129.31581914,  131.36073183,
        125.8859748 ,  124.90492465,  130.48636213,  126.47657112,
        131.16477407,  129.71518802,  127.22325354,  124.40136297,
        125.97359098,  124.41617706,  128.67928798,  128.60841524,
        125.27669352,  122.38757843,  127.23452407,  125.14857757,
        137.63148835,  131.84956001,  131.74919755,  130.36437999,
        124.58546668,  121.04684097,  123.78608478,  125.75306914,
        119.95812579,  116.68788647,  120.31425417,  118.44138817,
        119.26285682,  144.12947193,  116.13185417,  125.06012761,
        117.41581678,  127.87773253,  121.65592161,  120.32517454,
        128.15650793,  130.13749623,  129.41954974,  127.4637864 ,
        127.4403514 ,  122.89950406,  130.39979566,  127.54595726,
        129.90433359,  128.71312433,  129.86404982,  127.73713283,
        132.19682728,  122.6253342 ,  125.89765175,  130.24094944,
        123.74229611,  130.33590616,  133.93572273,  131.70798558,
        130.6988648 ,  128.39314066,  130.70787245,  131.77272899,
        129.77623511,  125.21104251,  133.70393842,  131.77111007,
        127.18748581,  126.54615983,  137.7420377 ,  135.00447733,
        133.60625201,  136.68387731,  127.59371801,  155.13372991,
        126.79071324,  162.43571437,  130.62458043,  192.8239241 ,
        198.86886984,  192.64111561,  187.19347198,  187.19686309,
        195.96278663,  170.33023846,  166.16333971,  172.61898547,
        135.41310547,  127.28407356,  159.80269824,  144.97474241,
        188.52998953,  193.7397226 ,  180.37549649,  174.16385272,
        180.5641215 ,  198.04977249,  164.1032061 ,  169.0607122 ,
        160.41869841,  126.38055437,  133.70074265,  135.26098801]))
2017-03-15 20:36:04  main:222                Processing chunk <Chunk (0/42895440), recording 0>...
2017-03-15 20:36:05  progressbar:97          0% complete, 0s elapsed. 5 spikes found.
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2017-03-15 20:36:35  progressbar:97          2% complete, 30s elapsed, 23m 17s remaining. 727 spikes found.
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2017-03-15 20:37:06  progressbar:97          3% complete, 1m 1s elapsed, 26m 3s remaining. 1926 spikes found.
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2017-03-15 20:37:36  progressbar:97          5% complete, 1m 31s elapsed, 28m 26s remaining. 2928 spikes found.
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2017-03-15 20:38:07  progressbar:97          7% complete, 2m 2s elapsed, 26m 44s remaining. 3886 spikes found.
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2017-03-15 20:39:07  progressbar:97          10% complete, 3m 2s elapsed, 25m 32s remaining. 5781 spikes found.
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2017-03-15 20:39:37  progressbar:97          12% complete, 3m 32s elapsed, 24m 39s remaining. 6522 spikes found.
2017-03-15 20:39:37  main:222                Processing chunk <Chunk (5397800/42895440), recording 0>...
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2017-03-15 20:40:07  progressbar:97          14% complete, 4m 3s elapsed, 23m 20s remaining. 7165 spikes found.
2017-03-15 20:40:07  main:222                Processing chunk <Chunk (6343400/42895440), recording 0>...
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2017-03-15 20:40:38  progressbar:97          17% complete, 4m 33s elapsed, 22m 10s remaining. 7838 spikes found.
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2017-03-15 20:41:08  progressbar:97          19% complete, 5m 4s elapsed, 21m 12s remaining. 8403 spikes found.
2017-03-15 20:41:08  main:222                Processing chunk <Chunk (8274000/42895440), recording 0>...
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2017-03-15 20:41:39  progressbar:97          21% complete, 5m 34s elapsed, 20m 46s remaining. 9405 spikes found.
2017-03-15 20:41:39  main:222                Processing chunk <Chunk (9081700/42895440), recording 0>...
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2017-03-15 20:42:10  progressbar:97          22% complete, 6m 5s elapsed, 20m 52s remaining. 10535 spikes found.
2017-03-15 20:42:10  main:222                Processing chunk <Chunk (9692400/42895440), recording 0>...
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2017-03-15 20:42:40  progressbar:97          24% complete, 6m 35s elapsed, 20m 39s remaining. 11611 spikes found.
2017-03-15 20:42:40  main:222                Processing chunk <Chunk (10381900/42895440), recording 0>...
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2017-03-15 20:43:10  progressbar:97          25% complete, 7m 5s elapsed, 20m 27s remaining. 12657 spikes found.
2017-03-15 20:43:10  main:222                Processing chunk <Chunk (11051700/42895440), recording 0>...
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2017-03-15 20:43:41  progressbar:97          27% complete, 7m 36s elapsed, 20m 5s remaining. 13573 spikes found.
2017-03-15 20:43:41  main:222                Processing chunk <Chunk (11780600/42895440), recording 0>...
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2017-03-15 20:44:11  progressbar:97          29% complete, 8m 6s elapsed, 19m 39s remaining. 14547 spikes found.
2017-03-15 20:44:11  main:222                Processing chunk <Chunk (12529200/42895440), recording 0>...
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2017-03-15 20:44:42  progressbar:97          30% complete, 8m 37s elapsed, 19m 14s remaining. 15672 spikes found.
2017-03-15 20:44:42  main:222                Processing chunk <Chunk (13277800/42895440), recording 0>...
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2017-03-15 20:45:12  progressbar:97          32% complete, 9m 7s elapsed, 18m 40s remaining. 16657 spikes found.
2017-03-15 20:45:12  main:222                Processing chunk <Chunk (14085500/42895440), recording 0>...
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2017-03-15 20:45:43  progressbar:97          34% complete, 9m 38s elapsed, 18m 20s remaining. 17866 spikes found.
2017-03-15 20:45:43  main:222                Processing chunk <Chunk (14775000/42895440), recording 0>...
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2017-03-15 20:46:13  progressbar:97          36% complete, 10m 8s elapsed, 17m 59s remaining. 19030 spikes found.
2017-03-15 20:46:13  main:222                Processing chunk <Chunk (15464500/42895440), recording 0>...
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2017-03-15 20:46:43  progressbar:97          37% complete, 10m 38s elapsed, 17m 39s remaining. 20135 spikes found.
2017-03-15 20:46:43  main:222                Processing chunk <Chunk (16134300/42895440), recording 0>...
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2017-03-15 20:47:13  progressbar:97          39% complete, 11m 8s elapsed, 17m 20s remaining. 21168 spikes found.
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2017-03-15 20:47:44  progressbar:97          40% complete, 11m 39s elapsed, 16m 53s remaining. 22250 spikes found.
2017-03-15 20:47:44  main:222                Processing chunk <Chunk (17513300/42895440), recording 0>...
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2017-03-15 20:48:14  progressbar:97          42% complete, 12m 9s elapsed, 16m 28s remaining. 23241 spikes found.
2017-03-15 20:48:14  main:222                Processing chunk <Chunk (18222500/42895440), recording 0>...
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2017-03-15 20:48:45  progressbar:97          44% complete, 12m 40s elapsed, 16m 2s remaining. 24253 spikes found.
2017-03-15 20:48:45  main:222                Processing chunk <Chunk (18931700/42895440), recording 0>...
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2017-03-15 20:49:15  progressbar:97          45% complete, 13m 10s elapsed, 15m 39s remaining. 25181 spikes found.
2017-03-15 20:49:15  main:222                Processing chunk <Chunk (19601500/42895440), recording 0>...
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2017-03-15 20:49:45  progressbar:97          47% complete, 13m 40s elapsed, 15m 10s remaining. 26157 spikes found.
2017-03-15 20:49:45  main:222                Processing chunk <Chunk (20330400/42895440), recording 0>...
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2017-03-15 20:50:15  progressbar:97          49% complete, 14m 11s elapsed, 14m 31s remaining. 27209 spikes found.
2017-03-15 20:50:15  main:222                Processing chunk <Chunk (21197200/42895440), recording 0>...
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2017-03-15 20:50:46  progressbar:97          51% complete, 14m 41s elapsed, 14m 2s remaining. 28287 spikes found.
2017-03-15 20:50:46  main:222                Processing chunk <Chunk (21926100/42895440), recording 0>...
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2017-03-15 20:51:16  progressbar:97          52% complete, 15m 11s elapsed, 13m 39s remaining. 29292 spikes found.
2017-03-15 20:51:16  main:222                Processing chunk <Chunk (22595900/42895440), recording 0>...
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2017-03-15 20:51:46  progressbar:97          54% complete, 15m 41s elapsed, 13m 10s remaining. 30216 spikes found.
2017-03-15 20:51:46  main:222                Processing chunk <Chunk (23324800/42895440), recording 0>...
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2017-03-15 20:52:17  progressbar:97          56% complete, 16m 12s elapsed, 12m 42s remaining. 31113 spikes found.
2017-03-15 20:52:17  main:222                Processing chunk <Chunk (24034000/42895440), recording 0>...
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2017-03-15 20:52:47  progressbar:97          57% complete, 16m 42s elapsed, 12m 15s remaining. 32002 spikes found.
2017-03-15 20:52:47  main:222                Processing chunk <Chunk (24743200/42895440), recording 0>...
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2017-03-15 20:53:17  progressbar:97          59% complete, 17m 12s elapsed, 11m 44s remaining. 32979 spikes found.
2017-03-15 20:53:17  main:222                Processing chunk <Chunk (25491800/42895440), recording 0>...
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2017-03-15 20:53:47  progressbar:97          61% complete, 17m 43s elapsed, 11m 13s remaining. 33919 spikes found.
2017-03-15 20:53:47  main:222                Processing chunk <Chunk (26260100/42895440), recording 0>...
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2017-03-15 20:54:18  progressbar:97          63% complete, 18m 13s elapsed, 10m 42s remaining. 34927 spikes found.
2017-03-15 20:54:18  main:222                Processing chunk <Chunk (27028400/42895440), recording 0>...
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2017-03-15 20:54:49  progressbar:97          64% complete, 18m 44s elapsed, 10m 11s remaining. 35932 spikes found.
2017-03-15 20:54:49  main:222                Processing chunk <Chunk (27777000/42895440), recording 0>...
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2017-03-15 20:55:19  progressbar:97          66% complete, 19m 14s elapsed, 9m 41s remaining. 36947 spikes found.
2017-03-15 20:55:19  main:222                Processing chunk <Chunk (28525600/42895440), recording 0>...
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2017-03-15 20:55:50  progressbar:97          68% complete, 19m 45s elapsed, 9m 10s remaining. 37990 spikes found.
2017-03-15 20:55:50  main:222                Processing chunk <Chunk (29293900/42895440), recording 0>...
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2017-03-15 20:56:20  progressbar:97          70% complete, 20m 15s elapsed, 8m 40s remaining. 38978 spikes found.
2017-03-15 20:56:20  main:222                Processing chunk <Chunk (30042500/42895440), recording 0>...
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2017-03-15 20:56:50  progressbar:97          71% complete, 20m 46s elapsed, 8m 6s remaining. 40048 spikes found.
2017-03-15 20:56:50  main:222                Processing chunk <Chunk (30850200/42895440), recording 0>...
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2017-03-15 20:57:21  progressbar:97          73% complete, 21m 16s elapsed, 7m 35s remaining. 41047 spikes found.
2017-03-15 20:57:21  main:222                Processing chunk <Chunk (31618500/42895440), recording 0>...
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2017-03-15 20:57:51  progressbar:97          75% complete, 21m 46s elapsed, 7m 1s remaining. 42031 spikes found.
2017-03-15 20:57:51  main:222                Processing chunk <Chunk (32426200/42895440), recording 0>...
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2017-03-15 20:58:21  progressbar:97          77% complete, 22m 17s elapsed, 6m 28s remaining. 43024 spikes found.
2017-03-15 20:58:21  main:222                Processing chunk <Chunk (33233900/42895440), recording 0>...
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2017-03-15 20:58:51  progressbar:97          79% complete, 22m 47s elapsed, 5m 53s remaining. 44214 spikes found.
2017-03-15 20:58:51  main:222                Processing chunk <Chunk (34081000/42895440), recording 0>...
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2017-03-15 20:59:22  progressbar:97          81% complete, 23m 17s elapsed, 5m 20s remaining. 45417 spikes found.
2017-03-15 20:59:22  main:222                Processing chunk <Chunk (34888700/42895440), recording 0>...
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2017-03-15 20:59:52  progressbar:97          83% complete, 23m 48s elapsed, 4m 48s remaining. 46573 spikes found.
2017-03-15 20:59:52  main:222                Processing chunk <Chunk (35676700/42895440), recording 0>...
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2017-03-15 21:00:23  progressbar:97          85% complete, 24m 18s elapsed, 4m 16s remaining. 47758 spikes found.
2017-03-15 21:00:23  main:222                Processing chunk <Chunk (36484400/42895440), recording 0>...
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2017-03-15 21:00:53  progressbar:97          86% complete, 24m 49s elapsed, 3m 49s remaining. 48718 spikes found.
2017-03-15 21:00:53  main:222                Processing chunk <Chunk (37173900/42895440), recording 0>...
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2017-03-15 21:01:24  progressbar:97          88% complete, 25m 19s elapsed, 3m 19s remaining. 49745 spikes found.
2017-03-15 21:01:24  main:222                Processing chunk <Chunk (37922500/42895440), recording 0>...
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2017-03-15 21:01:55  progressbar:97          90% complete, 25m 50s elapsed, 2m 49s remaining. 50978 spikes found.
2017-03-15 21:01:55  main:222                Processing chunk <Chunk (38671100/42895440), recording 0>...
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2017-03-15 21:02:25  progressbar:97          91% complete, 26m 20s elapsed, 2m 19s remaining. 52189 spikes found.
2017-03-15 21:02:25  main:222                Processing chunk <Chunk (39419700/42895440), recording 0>...
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2017-03-15 21:02:56  progressbar:97          93% complete, 26m 51s elapsed, 1m 47s remaining. 53385 spikes found.
2017-03-15 21:02:56  main:222                Processing chunk <Chunk (40207700/42895440), recording 0>...
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2017-03-15 21:03:26  progressbar:97          95% complete, 27m 21s elapsed, 1m 15s remaining. 54500 spikes found.
2017-03-15 21:03:26  main:222                Processing chunk <Chunk (41015400/42895440), recording 0>...
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2017-03-15 21:03:57  progressbar:97          97% complete, 27m 52s elapsed, 44s remaining. 55628 spikes found.
2017-03-15 21:03:57  main:222                Processing chunk <Chunk (41783700/42895440), recording 0>...
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2017-03-15 21:04:27  progressbar:97          99% complete, 28m 22s elapsed, 11s remaining. 56659 spikes found.
2017-03-15 21:04:27  main:222                Processing chunk <Chunk (42611100/42895440), recording 0>...
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2017-03-15 21:04:38  progressbar:97          100% complete, 28m 33s elapsed, 0s remaining. 57006 spikes found.