2017-05-16 19:07:42  main:187                Starting SpikeDetekt version 0.3.0 on <DatRawReader /mnt/packrat/userdirs/david/zpool1/DT9/20170512_612um_360um_170512_144019/20170512_612um_360um_170512_144019.dat>
2017-05-16 19:07:42  main:188                Parameters: 
{'__doc__': 'Contain default parameters.',
 'canonical_pcs': None,
 'chunk_overlap': 300,
 'chunk_size': 20000,
 'connected_component_join_size': 1,
 'detect_spikes': 'negative',
 'diagnostics_path': None,
 'excerpt_size': 20000,
 'experiment_name': '/mnt/packrat/userdirs/david/zpool1/DT9/20170512_612um_360um_170512_144019/1/20170512_612um_360um_170512_144019_sh1',
 'extract_s_after': 16,
 'extract_s_before': 16,
 'features_contiguous': True,
 'filter_butter_order': 3,
 'filter_high': 9500.0,
 'filter_low': 600.0,
 'nbits': 16,
 'nchannels': 96,
 'nexcerpts': 60,
 'nfeatures_per_channel': 6,
 'pca_nwaveforms_max': 20000,
 'prb_file': '1.prb',
 'raw_data_files': ['/mnt/packrat/userdirs/david/zpool1/DT9/20170512_612um_360um_170512_144019/20170512_612um_360um_170512_144019.dat'],
 'sample_rate': 20000.0,
 'save_high': False,
 'save_low': False,
 'save_raw': False,
 'threshold_strong_std_factor': 4.5,
 'threshold_weak_std_factor': 2.0,
 'use_single_threshold': False,
 'voltage_gain': 10.0,
 'waveforms_nsamples': 32,
 'weight_power': 2}
2017-05-16 19:08:17  main:200                Threshold: DoubleThreshold(strong=array([ 323.12499853,  338.45762298,  329.63588161,  146.30486899,
        309.53858379,  316.858823  ,  311.70580381,  314.54890565,
        308.49060289,  314.31816861,  316.44586571,  330.77900866,
        315.6099388 ,  335.12651229,  332.94842012,  326.82253222,
        304.29325073,  307.50888421,  305.6458935 ,  295.70564314,
        312.4897969 ,  293.14567841,  298.6576629 ,  293.21038101,
        299.34937501,  293.13766049,  299.37313638,  295.9193365 ,
        307.54225937,  306.33627734,  306.63059435,  294.17142785,
        268.72388467,  278.80259137,  269.1709179 ,  280.81661124,
        286.26266596,  281.71289068,  280.73575226,  280.78994611,
        267.6911935 ,  253.91139967,  253.82457277,  262.43484417,
        274.4818382 ,  254.55183104,  275.03158506,  273.99647918,
        255.37771045,  268.22479597,  261.64281226,  269.19768253,
        260.29222753,  266.80665787,  212.55519649,  212.52310461,
        210.96348811,  266.84743406,  241.05669003,  229.24207295,
        215.80766419,  269.91549166,  217.24356973,  217.70261099,
        282.68292375,  269.44366279,  272.19860878,  266.73684246,
        273.61607087,  267.8229608 ,  270.87339827,  265.89039094,
        280.43527881,  262.51332804,  267.66173054,  254.72765016,
        265.48712399,  266.1620596 ,  256.74316548,  261.41326815,
        246.37161733,  278.07217671,  271.64029755,  234.8021859 ,
        224.56906722,  257.35558223,  223.25465306,  222.5901457 ,
        269.42975605,  266.06966848,  275.40996669,  281.8641217 ,
        276.87236404,  273.60520188,  271.01256427,  268.09017915]), weak=array([ 143.61111046,  150.42561021,  146.50483627,   65.02438622,
        137.57270391,  140.82614356,  138.53591281,  139.79951362,
        137.10693462,  139.69696383,  140.64260698,  147.01289274,
        140.27108391,  148.94511657,  147.97707561,  145.25445876,
        135.24144477,  136.6706152 ,  135.84261933,  131.42473029,
        138.88435418,  130.28696818,  132.73673907,  130.31572489,
        133.04416667,  130.28340466,  133.05472728,  131.51970511,
        136.68544861,  136.1494566 ,  136.28026416,  130.74285682,
        119.43283763,  123.91226283,  119.63151907,  124.80738277,
        127.22785154,  125.20572919,  124.77144545,  124.7955316 ,
        118.97386378,  112.84951096,  112.81092123,  116.63770852,
        121.99192809,  113.13414713,  122.23626003,  121.77621297,
        113.50120464,  119.21102043,  116.28569434,  119.64341446,
        115.68543446,  118.58073683,   94.46897622,   94.45471316,
         93.76155027,  118.59885958,  107.13630668,  101.88536576,
         95.91451742,  119.96244074,   96.55269766,   96.756716  ,
        125.636855  ,  119.75273902,  120.97715946,  118.54970776,
        121.60714261,  119.03242702,  120.38817701,  118.17350708,
        124.63790169,  116.67259024,  118.96076913,  113.21228896,
        117.99427733,  118.29424871,  114.10807355,  116.18367474,
        109.49849659,  123.58763409,  120.72902113,  104.35652707,
         99.80847432,  114.38025877,   99.22429025,   98.92895365,
        119.74655824,  118.25318599,  122.40442964,  125.27294298,
        123.05438402,  121.60231195,  120.45002856,  119.15119073]))
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2017-05-16 19:08:17  progressbar:97          0% complete, 0s elapsed. 66 spikes found.
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2017-05-16 19:08:47  progressbar:97          2% complete, 30s elapsed, 17m 37s remaining. 3490 spikes found.
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2017-05-16 19:09:18  progressbar:97          5% complete, 1m 0s elapsed, 17m 8s remaining. 6831 spikes found.
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2017-05-16 19:14:21  progressbar:97          33% complete, 6m 4s elapsed, 11m 59s remaining. 53913 spikes found.
2017-05-16 19:14:21  main:222                Processing chunk <Chunk (14085500/41886000), recording 0>...
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2017-05-16 19:14:51  progressbar:97          35% complete, 6m 34s elapsed, 11m 51s remaining. 58960 spikes found.
2017-05-16 19:14:51  main:222                Processing chunk <Chunk (14952300/41886000), recording 0>...
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2017-05-16 19:15:21  progressbar:97          37% complete, 7m 4s elapsed, 11m 52s remaining. 63872 spikes found.
2017-05-16 19:15:21  main:222                Processing chunk <Chunk (15641800/41886000), recording 0>...
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2017-05-16 19:15:52  progressbar:97          39% complete, 7m 35s elapsed, 11m 45s remaining. 69139 spikes found.
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2017-05-16 19:16:22  progressbar:97          41% complete, 8m 5s elapsed, 11m 22s remaining. 74267 spikes found.
2017-05-16 19:16:22  main:222                Processing chunk <Chunk (17414800/41886000), recording 0>...
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2017-05-16 19:16:53  progressbar:97          43% complete, 8m 36s elapsed, 11m 20s remaining. 79583 spikes found.
2017-05-16 19:16:53  main:222                Processing chunk <Chunk (18064900/41886000), recording 0>...
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2017-05-16 19:17:23  progressbar:97          44% complete, 9m 6s elapsed, 11m 17s remaining. 84788 spikes found.
2017-05-16 19:17:23  main:222                Processing chunk <Chunk (18695300/41886000), recording 0>...
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2017-05-16 19:17:53  progressbar:97          46% complete, 9m 36s elapsed, 11m 12s remaining. 89825 spikes found.
2017-05-16 19:17:53  main:222                Processing chunk <Chunk (19345400/41886000), recording 0>...
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2017-05-16 19:18:24  progressbar:97          47% complete, 10m 7s elapsed, 10m 59s remaining. 94589 spikes found.
2017-05-16 19:18:24  main:222                Processing chunk <Chunk (20074300/41886000), recording 0>...
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2017-05-16 19:18:54  progressbar:97          49% complete, 10m 37s elapsed, 10m 46s remaining. 99842 spikes found.
2017-05-16 19:18:54  main:222                Processing chunk <Chunk (20783500/41886000), recording 0>...
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2017-05-16 19:19:25  progressbar:97          51% complete, 11m 8s elapsed, 10m 34s remaining. 104885 spikes found.
2017-05-16 19:19:25  main:222                Processing chunk <Chunk (21492700/41886000), recording 0>...
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2017-05-16 19:19:56  progressbar:97          52% complete, 11m 39s elapsed, 10m 21s remaining. 110238 spikes found.
2017-05-16 19:19:56  main:222                Processing chunk <Chunk (22182200/41886000), recording 0>...
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2017-05-16 19:20:27  progressbar:97          54% complete, 12m 10s elapsed, 10m 3s remaining. 115154 spikes found.
2017-05-16 19:20:27  main:222                Processing chunk <Chunk (22930800/41886000), recording 0>...
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2017-05-16 19:20:57  progressbar:97          57% complete, 12m 40s elapsed, 9m 16s remaining. 119319 spikes found.
2017-05-16 19:20:57  main:222                Processing chunk <Chunk (24191600/41886000), recording 0>...
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2017-05-16 19:21:28  progressbar:97          60% complete, 13m 11s elapsed, 8m 43s remaining. 124351 spikes found.
2017-05-16 19:21:28  main:222                Processing chunk <Chunk (25216000/41886000), recording 0>...
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2017-05-16 19:22:59  progressbar:97          67% complete, 14m 42s elapsed, 7m 13s remaining. 138165 spikes found.
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2017-05-16 19:23:29  progressbar:97          69% complete, 15m 12s elapsed, 6m 37s remaining. 142344 spikes found.
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2017-05-16 19:23:59  progressbar:97          71% complete, 15m 42s elapsed, 6m 19s remaining. 146688 spikes found.
2017-05-16 19:23:59  main:222                Processing chunk <Chunk (29865200/41886000), recording 0>...
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2017-05-16 19:24:30  progressbar:97          72% complete, 16m 13s elapsed, 6m 4s remaining. 151278 spikes found.
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2017-05-16 19:25:01  progressbar:97          74% complete, 16m 44s elapsed, 5m 44s remaining. 155630 spikes found.
2017-05-16 19:25:01  main:222                Processing chunk <Chunk (31185100/41886000), recording 0>...
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2017-05-16 19:25:31  progressbar:97          76% complete, 17m 14s elapsed, 5m 21s remaining. 160274 spikes found.
2017-05-16 19:25:31  main:222                Processing chunk <Chunk (31953400/41886000), recording 0>...
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2017-05-16 19:26:03  progressbar:97          77% complete, 17m 46s elapsed, 5m 5s remaining. 164952 spikes found.
2017-05-16 19:26:03  main:222                Processing chunk <Chunk (32564100/41886000), recording 0>...
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2017-05-16 19:26:33  progressbar:97          79% complete, 18m 16s elapsed, 4m 47s remaining. 169373 spikes found.
2017-05-16 19:26:33  main:222                Processing chunk <Chunk (33174800/41886000), recording 0>...
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2017-05-16 19:27:04  progressbar:97          80% complete, 18m 47s elapsed, 4m 30s remaining. 173831 spikes found.
2017-05-16 19:27:04  main:222                Processing chunk <Chunk (33785500/41886000), recording 0>...
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2017-05-16 19:27:35  progressbar:97          82% complete, 19m 18s elapsed, 4m 12s remaining. 178506 spikes found.
2017-05-16 19:27:35  main:222                Processing chunk <Chunk (34396200/41886000), recording 0>...
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2017-05-16 19:28:05  progressbar:97          83% complete, 19m 48s elapsed, 3m 48s remaining. 182949 spikes found.
2017-05-16 19:28:05  main:222                Processing chunk <Chunk (35125100/41886000), recording 0>...
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2017-05-16 19:28:36  progressbar:97          85% complete, 20m 19s elapsed, 3m 29s remaining. 187439 spikes found.
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2017-05-16 19:29:06  progressbar:97          86% complete, 20m 49s elapsed, 3m 11s remaining. 191767 spikes found.
2017-05-16 19:29:06  main:222                Processing chunk <Chunk (36326800/41886000), recording 0>...
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2017-05-16 19:29:36  progressbar:97          88% complete, 21m 19s elapsed, 2m 48s remaining. 196091 spikes found.
2017-05-16 19:29:36  main:222                Processing chunk <Chunk (37016300/41886000), recording 0>...
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2017-05-16 19:30:07  progressbar:97          90% complete, 21m 50s elapsed, 2m 18s remaining. 200307 spikes found.
2017-05-16 19:30:07  main:222                Processing chunk <Chunk (37883100/41886000), recording 0>...
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2017-05-16 19:30:37  progressbar:97          92% complete, 22m 20s elapsed, 1m 44s remaining. 204360 spikes found.
2017-05-16 19:30:37  main:222                Processing chunk <Chunk (38868100/41886000), recording 0>...
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2017-05-16 19:31:08  progressbar:97          95% complete, 22m 51s elapsed, 1m 5s remaining. 208041 spikes found.
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2017-05-16 19:31:38  progressbar:97          98% complete, 23m 21s elapsed, 23s remaining. 211964 spikes found.
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2017-05-16 19:31:59  progressbar:97          100% complete, 23m 42s elapsed, 0s remaining. 215573 spikes found.