2017-05-31 12:30:09  main:187                Starting SpikeDetekt version 0.3.0 on <DatRawReader /mnt/packrat/userdirs/david/zpool1/DT9/20170515_612um_360um_170515_184034/20170515_612um_360um_170515_184034.dat>
2017-05-31 12:30:09  main:188                Parameters: 
{'__doc__': 'Contain default parameters.',
 'canonical_pcs': None,
 'chunk_overlap': 300,
 'chunk_size': 20000,
 'connected_component_join_size': 1,
 'detect_spikes': 'negative',
 'diagnostics_path': None,
 'excerpt_size': 20000,
 'experiment_name': '/mnt/packrat/userdirs/david/zpool1/DT9/20170515_612um_360um_170515_184034/4/20170515_612um_360um_170515_184034_sh4',
 'extract_s_after': 16,
 'extract_s_before': 16,
 'features_contiguous': True,
 'filter_butter_order': 3,
 'filter_high': 9500.0,
 'filter_low': 600.0,
 'nbits': 16,
 'nchannels': 96,
 'nexcerpts': 60,
 'nfeatures_per_channel': 6,
 'pca_nwaveforms_max': 20000,
 'prb_file': '4.prb',
 'raw_data_files': ['/mnt/packrat/userdirs/david/zpool1/DT9/20170515_612um_360um_170515_184034/20170515_612um_360um_170515_184034.dat'],
 'sample_rate': 20000.0,
 'save_high': False,
 'save_low': False,
 'save_raw': False,
 'threshold_strong_std_factor': 4.5,
 'threshold_weak_std_factor': 2.0,
 'use_single_threshold': False,
 'voltage_gain': 10.0,
 'waveforms_nsamples': 32,
 'weight_power': 2}
2017-05-31 12:30:35  main:200                Threshold: DoubleThreshold(strong=array([ 325.02612753,  328.32729026,  345.11345208,  158.88754274,
        338.01765908,  339.52442411,  336.3290653 ,  324.65817105,
        336.95269167,  330.26624362,  324.34145794,  332.67980451,
        324.87429531,  321.0653838 ,  339.5953158 ,  339.25459097,
        318.98570756,  312.29927112,  308.47095104,  299.65231503,
        307.7817555 ,  298.11468488,  315.97445838,  308.85431954,
        302.6766745 ,  321.92264907,  335.60534009,  322.38471878,
        313.63860481,  317.04597086,  310.07663905,  310.78251267,
        267.25764252,  273.23273709,  270.46801587,  283.96000255,
        291.63808459,  276.45797467,  276.30568468,  277.8829401 ,
        276.67107479,  272.7920803 ,  273.31924551,  287.98868418,
        278.86107091,  276.04559545,  290.68684771,  286.64069583,
        264.80858348,  282.25776954,  271.04387639,  275.00381164,
        259.51693022,  269.13446258,  208.82998249,  208.71301529,
        210.3554189 ,  260.81530671,  217.28390971,  221.05032899,
        219.14093631,  269.4313277 ,  219.17962512,  220.46687562,
        280.822312  ,  275.68497325,  278.59284171,  263.5132275 ,
        280.54904247,  269.54572593,  277.33607242,  256.69960896,
        275.07287943,  271.97967558,  266.53637633,  256.94866957,
        261.68693825,  267.67862246,  262.30735924,  267.23929205,
        250.6691122 ,  243.3821321 ,  283.97086039,  272.51712619,
        281.7787668 ,  283.61324955,  275.04710358,  284.26443593,
        270.91481568,  274.92170778,  282.5813284 ,  279.66446172,
        277.79955332,  281.7697491 ,  274.73712412,  278.46435233]), weak=array([ 144.45605668,  145.92324011,  153.38375648,   70.61668566,
        150.2300707 ,  150.89974405,  149.47958458,  144.29252047,
        149.75675185,  146.78499716,  144.15175908,  147.85769089,
        144.38857569,  142.69572613,  150.93125147,  150.77981821,
        141.77142558,  138.79967606,  137.09820046,  133.17880668,
        136.79189133,  132.4954155 ,  140.43309261,  137.26858646,
        134.52296645,  143.07673292,  149.15792893,  143.28209723,
        139.39493547,  140.90932038,  137.81183958,  138.12556119,
        118.78117445,  121.43677204,  120.20800705,  126.20444558,
        129.61692648,  122.87021096,  122.80252652,  123.50352893,
        122.96492213,  121.24092458,  121.47522023,  127.99497075,
        123.93825374,  122.68693131,  129.19415454,  127.39586481,
        117.69270377,  125.44789757,  120.46394506,  122.22391629,
        115.34085788,  119.6153167 ,   92.81332555,   92.76134013,
         93.49129729,  115.91791409,   96.57062654,   98.24459066,
         97.3959717 ,  119.74725676,   97.41316672,   97.98527805,
        124.80991644,  122.52665478,  123.81904076,  117.11699   ,
        124.68846332,  119.79810042,  123.26047663,  114.08871509,
        122.25461308,  120.87985581,  118.4606117 ,  114.1994087 ,
        116.30530589,  118.96827665,  116.58104855,  118.77301869,
        111.40849431,  108.16983649,  126.20927129,  121.11872275,
        125.23500747,  126.05033314,  122.24315715,  126.3397493 ,
        120.40658475,  122.18742568,  125.59170151,  124.29531632,
        123.46646814,  125.2309996 ,  122.1053885 ,  123.76193437]))
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2017-05-31 12:30:35  progressbar:97          0% complete, 0s elapsed. 4 spikes found.
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2017-05-31 12:31:05  progressbar:97          2% complete, 30s elapsed, 19m 6s remaining. 1383 spikes found.
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2017-05-31 12:31:36  progressbar:97          3% complete, 1m 0s elapsed, 24m 22s remaining. 4095 spikes found.
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2017-05-31 12:33:06  progressbar:97          9% complete, 2m 31s elapsed, 23m 9s remaining. 7915 spikes found.
2017-05-31 12:33:06  main:222                Processing chunk <Chunk (8175500/83288880), recording 0>...
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2017-05-31 12:33:37  progressbar:97          11% complete, 3m 1s elapsed, 23m 16s remaining. 10077 spikes found.
2017-05-31 12:33:37  main:222                Processing chunk <Chunk (9593900/83288880), recording 0>...
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2017-05-31 12:34:07  progressbar:97          12% complete, 3m 32s elapsed, 25m 14s remaining. 14318 spikes found.
2017-05-31 12:34:07  main:222                Processing chunk <Chunk (10244000/83288880), recording 0>...
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2017-05-31 12:34:38  progressbar:97          13% complete, 4m 2s elapsed, 26m 39s remaining. 17953 spikes found.
2017-05-31 12:34:38  main:222                Processing chunk <Chunk (10972900/83288880), recording 0>...
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2017-05-31 12:35:08  progressbar:97          13% complete, 4m 32s elapsed, 28m 2s remaining. 21424 spikes found.
2017-05-31 12:35:08  main:222                Processing chunk <Chunk (11623000/83288880), recording 0>...
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2017-05-31 12:35:39  progressbar:97          14% complete, 5m 3s elapsed, 28m 59s remaining. 25241 spikes found.
2017-05-31 12:35:39  main:222                Processing chunk <Chunk (12391300/83288880), recording 0>...
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2017-05-31 12:36:40  progressbar:97          17% complete, 6m 4s elapsed, 28m 18s remaining. 28612 spikes found.
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2017-05-31 12:37:10  progressbar:97          18% complete, 6m 34s elapsed, 28m 25s remaining. 31163 spikes found.
2017-05-31 12:37:10  main:222                Processing chunk <Chunk (15661500/83288880), recording 0>...
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2017-05-31 12:37:41  progressbar:97          19% complete, 7m 5s elapsed, 28m 38s remaining. 34245 spikes found.
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2017-05-31 12:38:11  progressbar:97          20% complete, 7m 35s elapsed, 28m 45s remaining. 38665 spikes found.
2017-05-31 12:38:11  main:222                Processing chunk <Chunk (17395100/83288880), recording 0>...
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2017-05-31 12:38:41  progressbar:97          22% complete, 8m 6s elapsed, 28m 39s remaining. 42867 spikes found.
2017-05-31 12:38:41  main:222                Processing chunk <Chunk (18360400/83288880), recording 0>...
2017-05-31 12:38:42  main:222                Processing chunk <Chunk (18380100/83288880), recording 0>...
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2017-05-31 12:38:49  main:222                Processing chunk <Chunk (18577100/83288880), recording 0>...
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2017-05-31 12:39:00  main:222                Processing chunk <Chunk (18892300/83288880), recording 0>...
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2017-05-31 12:39:10  main:222                Processing chunk <Chunk (19187800/83288880), recording 0>...
2017-05-31 12:39:12  progressbar:97          23% complete, 8m 36s elapsed, 28m 43s remaining. 46833 spikes found.
2017-05-31 12:39:12  main:222                Processing chunk <Chunk (19207500/83288880), recording 0>...
2017-05-31 12:39:13  main:222                Processing chunk <Chunk (19227200/83288880), recording 0>...
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2017-05-31 12:39:22  main:222                Processing chunk <Chunk (19463600/83288880), recording 0>...
2017-05-31 12:39:23  main:222                Processing chunk <Chunk (19483300/83288880), recording 0>...
2017-05-31 12:39:23  main:222                Processing chunk <Chunk (19503000/83288880), recording 0>...
2017-05-31 12:39:23  main:222                Processing chunk <Chunk (19522700/83288880), recording 0>...
2017-05-31 12:39:24  main:222                Processing chunk <Chunk (19542400/83288880), recording 0>...
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2017-05-31 12:39:41  main:222                Processing chunk <Chunk (20054600/83288880), recording 0>...
2017-05-31 12:39:42  progressbar:97          24% complete, 9m 6s elapsed, 28m 41s remaining. 50221 spikes found.
2017-05-31 12:39:42  main:222                Processing chunk <Chunk (20074300/83288880), recording 0>...
2017-05-31 12:39:42  main:222                Processing chunk <Chunk (20094000/83288880), recording 0>...
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2017-05-31 12:39:53  main:222                Processing chunk <Chunk (20350100/83288880), recording 0>...
2017-05-31 12:39:54  main:222                Processing chunk <Chunk (20369800/83288880), recording 0>...
2017-05-31 12:39:55  main:222                Processing chunk <Chunk (20389500/83288880), recording 0>...
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2017-05-31 12:40:00  main:222                Processing chunk <Chunk (20527400/83288880), recording 0>...
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2017-05-31 12:40:09  main:222                Processing chunk <Chunk (20803200/83288880), recording 0>...
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2017-05-31 12:40:10  main:222                Processing chunk <Chunk (20842600/83288880), recording 0>...
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2017-05-31 12:40:12  main:222                Processing chunk <Chunk (20882000/83288880), recording 0>...
2017-05-31 12:40:13  progressbar:97          25% complete, 9m 37s elapsed, 28m 43s remaining. 54790 spikes found.
2017-05-31 12:40:13  main:222                Processing chunk <Chunk (20901700/83288880), recording 0>...
2017-05-31 12:40:14  main:222                Processing chunk <Chunk (20921400/83288880), recording 0>...
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2017-05-31 12:40:24  main:222                Processing chunk <Chunk (21256300/83288880), recording 0>...
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2017-05-31 12:40:39  main:222                Processing chunk <Chunk (21650300/83288880), recording 0>...
2017-05-31 12:40:40  main:222                Processing chunk <Chunk (21670000/83288880), recording 0>...
2017-05-31 12:40:42  main:222                Processing chunk <Chunk (21689700/83288880), recording 0>...
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2017-05-31 12:40:43  progressbar:97          26% complete, 10m 8s elapsed, 28m 42s remaining. 58950 spikes found.
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2017-05-31 12:41:13  progressbar:97          27% complete, 10m 38s elapsed, 28m 45s remaining. 62478 spikes found.
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2017-05-31 12:41:44  progressbar:97          28% complete, 11m 8s elapsed, 27m 26s remaining. 63119 spikes found.
2017-05-31 12:41:44  main:222                Processing chunk <Chunk (24053700/83288880), recording 0>...
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2017-05-31 12:42:14  progressbar:97          30% complete, 11m 38s elapsed, 26m 3s remaining. 63915 spikes found.
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2017-05-31 12:43:15  progressbar:97          34% complete, 12m 40s elapsed, 24m 22s remaining. 68478 spikes found.
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2017-05-31 12:43:46  progressbar:97          35% complete, 13m 11s elapsed, 24m 7s remaining. 71475 spikes found.
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2017-05-31 12:44:17  progressbar:97          36% complete, 13m 42s elapsed, 24m 9s remaining. 75527 spikes found.
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2017-05-31 12:44:47  progressbar:97          37% complete, 14m 12s elapsed, 24m 2s remaining. 79157 spikes found.
2017-05-31 12:44:47  main:222                Processing chunk <Chunk (30929000/83288880), recording 0>...
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2017-05-31 12:45:18  progressbar:97          38% complete, 14m 42s elapsed, 23m 51s remaining. 82743 spikes found.
2017-05-31 12:45:18  main:222                Processing chunk <Chunk (31776100/83288880), recording 0>...
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2017-05-31 12:45:48  progressbar:97          39% complete, 15m 13s elapsed, 23m 46s remaining. 86615 spikes found.
2017-05-31 12:45:48  main:222                Processing chunk <Chunk (32505000/83288880), recording 0>...
2017-05-31 12:45:49  main:222                Processing chunk <Chunk (32524700/83288880), recording 0>...
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2017-05-31 12:46:18  progressbar:97          39% complete, 15m 43s elapsed, 23m 40s remaining. 90347 spikes found.
2017-05-31 12:46:18  main:222                Processing chunk <Chunk (33233900/83288880), recording 0>...
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2017-05-31 12:46:49  progressbar:97          40% complete, 16m 13s elapsed, 23m 35s remaining. 93013 spikes found.
2017-05-31 12:46:49  main:222                Processing chunk <Chunk (33943100/83288880), recording 0>...
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2017-05-31 12:47:19  progressbar:97          41% complete, 16m 43s elapsed, 23m 31s remaining. 95944 spikes found.
2017-05-31 12:47:19  main:222                Processing chunk <Chunk (34612900/83288880), recording 0>...
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2017-05-31 12:47:49  progressbar:97          42% complete, 17m 14s elapsed, 23m 23s remaining. 99393 spikes found.
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2017-05-31 12:48:50  progressbar:97          45% complete, 18m 15s elapsed, 22m 18s remaining. 106590 spikes found.
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2017-05-31 12:51:54  progressbar:97          54% complete, 21m 18s elapsed, 18m 7s remaining. 117853 spikes found.
2017-05-31 12:51:54  main:222                Processing chunk <Chunk (45014500/83288880), recording 0>...
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2017-05-31 12:52:24  progressbar:97          54% complete, 21m 48s elapsed, 17m 55s remaining. 120398 spikes found.
2017-05-31 12:52:24  main:222                Processing chunk <Chunk (45723700/83288880), recording 0>...
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2017-05-31 12:52:54  progressbar:97          55% complete, 22m 19s elapsed, 17m 50s remaining. 123395 spikes found.
2017-05-31 12:52:54  main:222                Processing chunk <Chunk (46295000/83288880), recording 0>...
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2017-05-31 12:53:25  progressbar:97          56% complete, 22m 49s elapsed, 17m 39s remaining. 126103 spikes found.
2017-05-31 12:53:25  main:222                Processing chunk <Chunk (46964800/83288880), recording 0>...
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2017-05-31 12:53:55  progressbar:97          57% complete, 23m 20s elapsed, 17m 30s remaining. 128941 spikes found.
2017-05-31 12:53:55  main:222                Processing chunk <Chunk (47575500/83288880), recording 0>...
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2017-05-31 12:54:25  progressbar:97          57% complete, 23m 50s elapsed, 17m 19s remaining. 131524 spikes found.
2017-05-31 12:54:25  main:222                Processing chunk <Chunk (48225600/83288880), recording 0>...
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2017-05-31 12:54:55  progressbar:97          58% complete, 24m 20s elapsed, 17m 8s remaining. 134274 spikes found.
2017-05-31 12:54:55  main:222                Processing chunk <Chunk (48875700/83288880), recording 0>...
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2017-05-31 12:55:57  progressbar:97          60% complete, 25m 21s elapsed, 16m 37s remaining. 140012 spikes found.
2017-05-31 12:55:57  main:222                Processing chunk <Chunk (50313800/83288880), recording 0>...
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2017-05-31 12:56:27  progressbar:97          61% complete, 25m 52s elapsed, 16m 19s remaining. 143651 spikes found.
2017-05-31 12:56:27  main:222                Processing chunk <Chunk (51062400/83288880), recording 0>...
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2017-05-31 12:56:57  progressbar:97          62% complete, 26m 22s elapsed, 15m 54s remaining. 146884 spikes found.
2017-05-31 12:56:57  main:222                Processing chunk <Chunk (51948900/83288880), recording 0>...
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2017-05-31 12:57:27  progressbar:97          63% complete, 26m 52s elapsed, 15m 32s remaining. 150010 spikes found.
2017-05-31 12:57:27  main:222                Processing chunk <Chunk (52776300/83288880), recording 0>...
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2017-05-31 12:58:58  progressbar:97          66% complete, 28m 22s elapsed, 14m 20s remaining. 157079 spikes found.
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2017-05-31 12:59:28  progressbar:97          68% complete, 28m 52s elapsed, 13m 34s remaining. 157529 spikes found.
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2017-05-31 12:59:58  progressbar:97          69% complete, 29m 23s elapsed, 13m 2s remaining. 159391 spikes found.
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2017-05-31 13:02:00  progressbar:97          72% complete, 31m 24s elapsed, 11m 39s remaining. 170784 spikes found.
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2017-05-31 13:02:30  progressbar:97          74% complete, 31m 55s elapsed, 10m 55s remaining. 171201 spikes found.
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2017-05-31 13:03:00  progressbar:97          75% complete, 32m 25s elapsed, 10m 26s remaining. 173023 spikes found.
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2017-05-31 13:03:31  progressbar:97          76% complete, 32m 55s elapsed, 9m 55s remaining. 174788 spikes found.
2017-05-31 13:03:31  main:222                Processing chunk <Chunk (63985600/83288880), recording 0>...
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2017-05-31 13:04:01  progressbar:97          77% complete, 33m 25s elapsed, 9m 36s remaining. 177655 spikes found.
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2017-05-31 13:04:32  progressbar:97          78% complete, 33m 56s elapsed, 9m 20s remaining. 180806 spikes found.
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2017-05-31 13:05:02  progressbar:97          79% complete, 34m 26s elapsed, 9m 0s remaining. 183262 spikes found.
2017-05-31 13:05:02  main:222                Processing chunk <Chunk (66034400/83288880), recording 0>...
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2017-05-31 13:05:32  progressbar:97          80% complete, 34m 57s elapsed, 8m 35s remaining. 185748 spikes found.
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2017-05-31 13:06:02  progressbar:97          81% complete, 35m 27s elapsed, 8m 11s remaining. 187943 spikes found.
2017-05-31 13:06:02  main:222                Processing chunk <Chunk (67649800/83288880), recording 0>...
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2017-05-31 13:06:33  progressbar:97          82% complete, 35m 57s elapsed, 7m 52s remaining. 191117 spikes found.
2017-05-31 13:06:33  main:222                Processing chunk <Chunk (68319600/83288880), recording 0>...
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2017-05-31 13:07:03  progressbar:97          82% complete, 36m 28s elapsed, 7m 29s remaining. 193858 spikes found.
2017-05-31 13:07:03  main:222                Processing chunk <Chunk (69107600/83288880), recording 0>...
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2017-05-31 13:07:34  progressbar:97          83% complete, 36m 58s elapsed, 7m 3s remaining. 196555 spikes found.
2017-05-31 13:07:34  main:222                Processing chunk <Chunk (69935000/83288880), recording 0>...
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2017-05-31 13:08:04  progressbar:97          84% complete, 37m 28s elapsed, 6m 40s remaining. 199207 spikes found.
2017-05-31 13:08:04  main:222                Processing chunk <Chunk (70703300/83288880), recording 0>...
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2017-05-31 13:09:05  progressbar:97          86% complete, 38m 30s elapsed, 5m 46s remaining. 204295 spikes found.
2017-05-31 13:09:05  main:222                Processing chunk <Chunk (72436900/83288880), recording 0>...
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2017-05-31 13:09:36  progressbar:97          87% complete, 39m 1s elapsed, 5m 25s remaining. 207625 spikes found.
2017-05-31 13:09:36  main:222                Processing chunk <Chunk (73126400/83288880), recording 0>...
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2017-05-31 13:10:07  progressbar:97          88% complete, 39m 31s elapsed, 5m 3s remaining. 210673 spikes found.
2017-05-31 13:10:07  main:222                Processing chunk <Chunk (73835600/83288880), recording 0>...
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2017-05-31 13:10:38  progressbar:97          89% complete, 40m 2s elapsed, 4m 47s remaining. 214584 spikes found.
2017-05-31 13:10:38  main:222                Processing chunk <Chunk (74387200/83288880), recording 0>...
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2017-05-31 13:11:08  progressbar:97          89% complete, 40m 32s elapsed, 4m 31s remaining. 217842 spikes found.
2017-05-31 13:11:08  main:222                Processing chunk <Chunk (74938800/83288880), recording 0>...
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2017-05-31 13:11:38  progressbar:97          90% complete, 41m 3s elapsed, 4m 12s remaining. 221391 spikes found.
2017-05-31 13:11:38  main:222                Processing chunk <Chunk (75549500/83288880), recording 0>...
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2017-05-31 13:12:10  progressbar:97          91% complete, 41m 34s elapsed, 3m 50s remaining. 224793 spikes found.
2017-05-31 13:12:10  main:222                Processing chunk <Chunk (76239000/83288880), recording 0>...
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2017-05-31 13:12:40  progressbar:97          92% complete, 42m 5s elapsed, 3m 32s remaining. 228425 spikes found.
2017-05-31 13:12:40  main:222                Processing chunk <Chunk (76830000/83288880), recording 0>...
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2017-05-31 13:13:11  progressbar:97          92% complete, 42m 36s elapsed, 3m 13s remaining. 231971 spikes found.
2017-05-31 13:13:11  main:222                Processing chunk <Chunk (77440700/83288880), recording 0>...
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2017-05-31 13:13:41  progressbar:97          93% complete, 43m 6s elapsed, 2m 54s remaining. 235078 spikes found.
2017-05-31 13:13:41  main:222                Processing chunk <Chunk (78012000/83288880), recording 0>...
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2017-05-31 13:14:12  progressbar:97          94% complete, 43m 36s elapsed, 2m 37s remaining. 238182 spikes found.
2017-05-31 13:14:12  main:222                Processing chunk <Chunk (78563600/83288880), recording 0>...
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2017-05-31 13:14:43  progressbar:97          95% complete, 44m 7s elapsed, 2m 18s remaining. 241536 spikes found.
2017-05-31 13:14:43  main:222                Processing chunk <Chunk (79154600/83288880), recording 0>...
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2017-05-31 13:15:14  progressbar:97          95% complete, 44m 39s elapsed, 1m 59s remaining. 244724 spikes found.
2017-05-31 13:15:14  main:222                Processing chunk <Chunk (79745600/83288880), recording 0>...
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2017-05-31 13:15:45  progressbar:97          96% complete, 45m 9s elapsed, 1m 39s remaining. 247920 spikes found.
2017-05-31 13:15:45  main:222                Processing chunk <Chunk (80336600/83288880), recording 0>...
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2017-05-31 13:16:16  progressbar:97          97% complete, 45m 40s elapsed, 1m 19s remaining. 251325 spikes found.
2017-05-31 13:16:16  main:222                Processing chunk <Chunk (80927600/83288880), recording 0>...
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2017-05-31 13:16:46  progressbar:97          97% complete, 46m 11s elapsed, 58s remaining. 254322 spikes found.
2017-05-31 13:16:46  main:222                Processing chunk <Chunk (81558000/83288880), recording 0>...
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2017-05-31 13:17:17  progressbar:97          98% complete, 46m 41s elapsed, 32s remaining. 257175 spikes found.
2017-05-31 13:17:17  main:222                Processing chunk <Chunk (82346000/83288880), recording 0>...
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2017-05-31 13:17:43  progressbar:97          100% complete, 47m 7s elapsed, 0s remaining. 258615 spikes found.