2017-05-17 08:04:29  main:187                Starting SpikeDetekt version 0.3.0 on <DatRawReader /mnt/packrat/userdirs/david/zpool1/DT9/20170516_612um_576um_170516_165149/20170516_612um_576um_170516_165149.dat>
2017-05-17 08:04:29  main:188                Parameters: 
{'__doc__': 'Contain default parameters.',
 'canonical_pcs': None,
 'chunk_overlap': 300,
 'chunk_size': 20000,
 'connected_component_join_size': 1,
 'detect_spikes': 'negative',
 'diagnostics_path': None,
 'excerpt_size': 20000,
 'experiment_name': '/mnt/packrat/userdirs/david/zpool1/DT9/20170516_612um_576um_170516_165149/3/20170516_612um_576um_170516_165149_sh3',
 'extract_s_after': 16,
 'extract_s_before': 16,
 'features_contiguous': True,
 'filter_butter_order': 3,
 'filter_high': 9500.0,
 'filter_low': 600.0,
 'nbits': 16,
 'nchannels': 96,
 'nexcerpts': 60,
 'nfeatures_per_channel': 6,
 'pca_nwaveforms_max': 20000,
 'prb_file': '3.prb',
 'raw_data_files': ['/mnt/packrat/userdirs/david/zpool1/DT9/20170516_612um_576um_170516_165149/20170516_612um_576um_170516_165149.dat'],
 'sample_rate': 20000.0,
 'save_high': False,
 'save_low': False,
 'save_raw': False,
 'threshold_strong_std_factor': 4.5,
 'threshold_weak_std_factor': 2.0,
 'use_single_threshold': False,
 'voltage_gain': 10.0,
 'waveforms_nsamples': 32,
 'weight_power': 2}
2017-05-17 08:05:23  main:200                Threshold: DoubleThreshold(strong=array([ 311.40320702,  318.20957565,  333.22842507,  153.65053948,
        322.07240296,  332.86692601,  330.35438666,  316.08285858,
        328.46319592,  320.81542001,  307.02192768,  324.11621506,
        317.33456082,  311.66165513,  331.46311301,  323.01654938,
        300.93612331,  300.06180848,  307.64233409,  283.74475788,
        294.94964507,  276.71416399,  304.08681154,  290.88652138,
        275.73400848,  295.71353017,  308.91399753,  316.91452301,
        294.57711681,  309.63059785,  295.08715747,  294.68312965,
        264.71350596,  276.10827864,  281.77135025,  288.6917419 ,
        284.53169168,  288.22575745,  286.4173525 ,  280.5611132 ,
        267.17578914,  253.71544097,  266.73353472,  282.91706426,
        281.33904375,  281.61045591,  272.03078188,  282.33774904,
        270.24847519,  280.00684584,  267.42266897,  273.95488631,
        255.89611995,  270.8048938 ,  229.38516149,  209.42075495,
        266.72811841,  264.35816223,  269.58016982,  273.15171767,
        273.80353669,  265.47932456,  225.19352578,  258.34808314,
        269.7475959 ,  276.85780235,  284.0476757 ,  266.21508579,
        279.39060488,  276.35506048,  275.16576124,  266.90092405,
        271.67787428,  269.03932758,  263.79390254,  263.99973171,
        262.7550742 ,  269.05176179,  271.0944021 ,  277.38047912,
        276.0635232 ,  282.73864968,  294.56872369,  269.75608325,
        277.80015604,  274.84682339,  280.92774412,  280.51145945,
        281.50360616,  281.79412539,  292.0707732 ,  285.53249234,
        287.50494676,  296.34301393,  272.7735515 ,  277.3172556 ]), weak=array([ 138.40142534,  141.42647807,  148.10152225,   68.28912866,
        143.1432902 ,  147.940856  ,  146.82417185,  140.48127048,
        145.98364263,  142.58463112,  136.45419008,  144.05165114,
        141.03758259,  138.51629117,  147.31693912,  143.56291083,
        133.74938814,  133.36080377,  136.72992626,  126.10878128,
        131.08873114,  122.98407289,  135.14969402,  129.28289839,
        122.54844821,  131.42823563,  137.29511001,  140.85089912,
        130.92316302,  137.61359905,  131.14984776,  130.97027985,
        117.65044709,  122.71479051,  125.23171122,  128.30744085,
        126.45852964,  128.10033664,  127.29660111,  124.69382809,
        118.74479517,  112.76241821,  118.54823765,  125.74091745,
        125.039575  ,  125.16020263,  120.90256972,  125.48344402,
        120.11043342,  124.44748704,  118.85451954,  121.75772725,
        113.73160887,  120.35773058,  101.94896066,   93.07589109,
        118.54583041,  117.49251655,  119.81340881,  121.40076341,
        121.69046075,  117.99081091,  100.08601146,  114.82137029,
        119.8878204 ,  123.04791216,  126.24341142,  118.31781591,
        124.17360217,  122.82447133,  122.29589389,  118.62263291,
        120.7457219 ,  119.57303448,  117.24173446,  117.33321409,
        116.78003298,  119.57856079,  120.48640094,  123.28021294,
        122.6948992 ,  125.66162208,  130.91943275,  119.89159256,
        123.46673602,  122.15414373,  124.85677516,  124.67175975,
        125.11271385,  125.24183351,  129.80923253,  126.90332993,
        127.77997634,  131.70800619,  121.23268956,  123.2521136 ]))
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2017-05-17 08:15:28  progressbar:97          31% complete, 10m 4s elapsed, 22m 23s remaining. 35420 spikes found.
2017-05-17 08:15:28  main:222                Processing chunk <Chunk (30338000/97788960), recording 0>...
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2017-05-17 08:15:58  progressbar:97          31% complete, 10m 34s elapsed, 22m 42s remaining. 38663 spikes found.
2017-05-17 08:15:58  main:222                Processing chunk <Chunk (31086600/97788960), recording 0>...
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2017-05-17 08:16:28  progressbar:97          32% complete, 11m 5s elapsed, 22m 52s remaining. 41895 spikes found.
2017-05-17 08:16:28  main:222                Processing chunk <Chunk (31914000/97788960), recording 0>...
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2017-05-17 08:16:59  progressbar:97          33% complete, 11m 35s elapsed, 23m 9s remaining. 45370 spikes found.
2017-05-17 08:16:59  main:222                Processing chunk <Chunk (32623200/97788960), recording 0>...
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2017-05-17 08:17:29  progressbar:97          34% complete, 12m 6s elapsed, 23m 26s remaining. 48958 spikes found.
2017-05-17 08:17:29  main:222                Processing chunk <Chunk (33293000/97788960), recording 0>...
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2017-05-17 08:18:00  progressbar:97          34% complete, 12m 36s elapsed, 23m 48s remaining. 52815 spikes found.
2017-05-17 08:18:00  main:222                Processing chunk <Chunk (33864300/97788960), recording 0>...
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2017-05-17 08:18:31  progressbar:97          35% complete, 13m 7s elapsed, 24m 3s remaining. 56580 spikes found.
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2017-05-17 08:23:04  progressbar:97          44% complete, 17m 40s elapsed, 21m 57s remaining. 81536 spikes found.
2017-05-17 08:23:04  main:222                Processing chunk <Chunk (43615800/97788960), recording 0>...
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2017-05-17 08:23:35  progressbar:97          45% complete, 18m 11s elapsed, 21m 53s remaining. 84794 spikes found.
2017-05-17 08:23:35  main:222                Processing chunk <Chunk (44384100/97788960), recording 0>...
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2017-05-17 08:24:05  progressbar:97          46% complete, 18m 41s elapsed, 21m 51s remaining. 88131 spikes found.
2017-05-17 08:24:05  main:222                Processing chunk <Chunk (45073600/97788960), recording 0>...
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2017-05-17 08:24:35  progressbar:97          46% complete, 19m 11s elapsed, 21m 42s remaining. 91417 spikes found.
2017-05-17 08:24:35  main:222                Processing chunk <Chunk (45881300/97788960), recording 0>...
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2017-05-17 08:25:05  progressbar:97          47% complete, 19m 41s elapsed, 21m 41s remaining. 95021 spikes found.
2017-05-17 08:25:05  main:222                Processing chunk <Chunk (46531400/97788960), recording 0>...
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2017-05-17 08:25:35  progressbar:97          48% complete, 20m 12s elapsed, 21m 36s remaining. 99047 spikes found.
2017-05-17 08:25:35  main:222                Processing chunk <Chunk (47260300/97788960), recording 0>...
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2017-05-17 08:26:06  progressbar:97          49% complete, 20m 43s elapsed, 21m 21s remaining. 103532 spikes found.
2017-05-17 08:26:06  main:222                Processing chunk <Chunk (48146800/97788960), recording 0>...
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2017-05-17 08:26:37  progressbar:97          50% complete, 21m 14s elapsed, 21m 11s remaining. 107730 spikes found.
2017-05-17 08:26:37  main:222                Processing chunk <Chunk (48934800/97788960), recording 0>...
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2017-05-17 08:27:08  progressbar:97          50% complete, 21m 44s elapsed, 21m 1s remaining. 112077 spikes found.
2017-05-17 08:27:08  main:222                Processing chunk <Chunk (49722800/97788960), recording 0>...
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2017-05-17 08:27:38  progressbar:97          51% complete, 22m 14s elapsed, 20m 51s remaining. 116084 spikes found.
2017-05-17 08:27:38  main:222                Processing chunk <Chunk (50471400/97788960), recording 0>...
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2017-05-17 08:28:08  progressbar:97          52% complete, 22m 44s elapsed, 20m 39s remaining. 119761 spikes found.
2017-05-17 08:28:08  main:222                Processing chunk <Chunk (51239700/97788960), recording 0>...
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2017-05-17 08:28:38  progressbar:97          53% complete, 23m 15s elapsed, 20m 32s remaining. 123823 spikes found.
2017-05-17 08:28:38  main:222                Processing chunk <Chunk (51929200/97788960), recording 0>...
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2017-05-17 08:29:08  progressbar:97          53% complete, 23m 45s elapsed, 20m 16s remaining. 127960 spikes found.
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2017-05-17 08:29:39  progressbar:97          55% complete, 24m 15s elapsed, 19m 50s remaining. 131341 spikes found.
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2017-05-17 08:30:09  progressbar:97          55% complete, 24m 45s elapsed, 19m 40s remaining. 135230 spikes found.
2017-05-17 08:30:09  main:222                Processing chunk <Chunk (54490200/97788960), recording 0>...
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2017-05-17 08:30:40  progressbar:97          56% complete, 25m 16s elapsed, 19m 27s remaining. 139193 spikes found.
2017-05-17 08:30:40  main:222                Processing chunk <Chunk (55258500/97788960), recording 0>...
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2017-05-17 08:31:11  progressbar:97          57% complete, 25m 47s elapsed, 19m 19s remaining. 142494 spikes found.
2017-05-17 08:31:11  main:222                Processing chunk <Chunk (55908600/97788960), recording 0>...
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2017-05-17 08:31:41  progressbar:97          57% complete, 26m 17s elapsed, 19m 6s remaining. 145647 spikes found.
2017-05-17 08:31:41  main:222                Processing chunk <Chunk (56637500/97788960), recording 0>...
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2017-05-17 08:32:12  progressbar:97          58% complete, 26m 48s elapsed, 18m 57s remaining. 149254 spikes found.
2017-05-17 08:32:12  main:222                Processing chunk <Chunk (57287600/97788960), recording 0>...
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2017-05-17 08:32:43  progressbar:97          59% complete, 27m 19s elapsed, 18m 40s remaining. 152839 spikes found.
2017-05-17 08:32:43  main:222                Processing chunk <Chunk (58095300/97788960), recording 0>...
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2017-05-17 08:33:13  progressbar:97          60% complete, 27m 50s elapsed, 18m 28s remaining. 156564 spikes found.
2017-05-17 08:33:13  main:222                Processing chunk <Chunk (58784800/97788960), recording 0>...
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2017-05-17 08:33:44  progressbar:97          60% complete, 28m 20s elapsed, 18m 11s remaining. 160033 spikes found.
2017-05-17 08:33:44  main:222                Processing chunk <Chunk (59553100/97788960), recording 0>...
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2017-05-17 08:34:15  progressbar:97          61% complete, 28m 51s elapsed, 17m 54s remaining. 163591 spikes found.
2017-05-17 08:34:15  main:222                Processing chunk <Chunk (60341100/97788960), recording 0>...
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2017-05-17 08:34:46  progressbar:97          62% complete, 29m 22s elapsed, 17m 36s remaining. 167040 spikes found.
2017-05-17 08:34:46  main:222                Processing chunk <Chunk (61129100/97788960), recording 0>...
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2017-05-17 08:35:16  progressbar:97          63% complete, 29m 52s elapsed, 17m 16s remaining. 170284 spikes found.
2017-05-17 08:35:16  main:222                Processing chunk <Chunk (61956500/97788960), recording 0>...
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2017-05-17 08:35:46  progressbar:97          64% complete, 30m 23s elapsed, 16m 58s remaining. 173751 spikes found.
2017-05-17 08:35:46  main:222                Processing chunk <Chunk (62744500/97788960), recording 0>...
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2017-05-17 08:36:16  progressbar:97          64% complete, 30m 53s elapsed, 16m 45s remaining. 177287 spikes found.
2017-05-17 08:36:16  main:222                Processing chunk <Chunk (63394600/97788960), recording 0>...
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2017-05-17 08:36:46  progressbar:97          65% complete, 31m 23s elapsed, 16m 29s remaining. 180655 spikes found.
2017-05-17 08:36:46  main:222                Processing chunk <Chunk (64103800/97788960), recording 0>...
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2017-05-17 08:37:18  progressbar:97          66% complete, 31m 55s elapsed, 16m 2s remaining. 183691 spikes found.
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2017-05-17 08:40:21  progressbar:97          72% complete, 34m 57s elapsed, 13m 0s remaining. 199964 spikes found.
2017-05-17 08:40:21  main:222                Processing chunk <Chunk (71274600/97788960), recording 0>...
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2017-05-17 08:40:51  progressbar:97          73% complete, 35m 28s elapsed, 12m 34s remaining. 203240 spikes found.
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2017-05-17 08:41:22  progressbar:97          74% complete, 35m 58s elapsed, 12m 8s remaining. 206455 spikes found.
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2017-05-17 08:42:23  progressbar:97          76% complete, 36m 59s elapsed, 11m 15s remaining. 212869 spikes found.
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2017-05-17 08:42:53  progressbar:97          77% complete, 37m 29s elapsed, 10m 55s remaining. 216537 spikes found.
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2017-05-17 08:43:23  progressbar:97          78% complete, 38m 0s elapsed, 10m 32s remaining. 219932 spikes found.
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2017-05-17 08:43:53  progressbar:97          79% complete, 38m 30s elapsed, 10m 13s remaining. 223545 spikes found.
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2017-05-17 08:44:24  progressbar:97          79% complete, 39m 0s elapsed, 9m 56s remaining. 227149 spikes found.
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2017-05-17 08:46:26  progressbar:97          82% complete, 41m 2s elapsed, 8m 39s remaining. 240164 spikes found.
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2017-05-17 08:46:56  progressbar:97          83% complete, 41m 32s elapsed, 8m 18s remaining. 243375 spikes found.
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2017-05-17 08:47:26  progressbar:97          84% complete, 42m 2s elapsed, 7m 53s remaining. 246277 spikes found.
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2017-05-17 08:55:02  progressbar:97          98% complete, 49m 39s elapsed, 43s remaining. 300774 spikes found.
2017-05-17 08:55:02  main:222                Processing chunk <Chunk (96372400/97788960), recording 0>...
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2017-05-17 08:55:33  progressbar:97          99% complete, 50m 9s elapsed, 16s remaining. 304273 spikes found.
2017-05-17 08:55:33  main:222                Processing chunk <Chunk (97258900/97788960), recording 0>...
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2017-05-17 08:55:48  progressbar:97          100% complete, 50m 24s elapsed, 0s remaining. 305705 spikes found.