2017-05-25 09:45:56  main:187                Starting SpikeDetekt version 0.3.0 on <DatRawReader /mnt/packrat/userdirs/david/zpool1/DT9/20170522_900um_936um_170522_151132/20170522_900um_936um_170522_151132.dat>
2017-05-25 09:45:56  main:188                Parameters: 
{'__doc__': 'Contain default parameters.',
 'canonical_pcs': None,
 'chunk_overlap': 300,
 'chunk_size': 20000,
 'connected_component_join_size': 1,
 'detect_spikes': 'negative',
 'diagnostics_path': None,
 'excerpt_size': 20000,
 'experiment_name': '/mnt/packrat/userdirs/david/zpool1/DT9/20170522_900um_936um_170522_151132/8/20170522_900um_936um_170522_151132_sh8',
 'extract_s_after': 16,
 'extract_s_before': 16,
 'features_contiguous': True,
 'filter_butter_order': 3,
 'filter_high': 9500.0,
 'filter_low': 600.0,
 'nbits': 16,
 'nchannels': 96,
 'nexcerpts': 60,
 'nfeatures_per_channel': 6,
 'pca_nwaveforms_max': 20000,
 'prb_file': '8.prb',
 'raw_data_files': ['/mnt/packrat/userdirs/david/zpool1/DT9/20170522_900um_936um_170522_151132/20170522_900um_936um_170522_151132.dat'],
 'sample_rate': 20000.0,
 'save_high': False,
 'save_low': False,
 'save_raw': False,
 'threshold_strong_std_factor': 4.5,
 'threshold_weak_std_factor': 2.0,
 'use_single_threshold': False,
 'voltage_gain': 10.0,
 'waveforms_nsamples': 32,
 'weight_power': 2}
2017-05-25 09:46:41  main:200                Threshold: DoubleThreshold(strong=array([ 314.11462418,  327.8224857 ,  330.05635286,  168.21665718,
        320.10846043,  328.15277595,  315.19487207,  321.8912068 ,
        327.68522583,  326.5835509 ,  330.23741774,  350.91743359,
        325.06846579,  326.467039  ,  311.85589556,  328.53732945,
        306.64317453,  310.08749359,  303.66862296,  311.36230702,
        297.13386999,  295.60901241,  297.29116125,  295.70696339,
        303.00718613,  310.05168991,  313.53157853,  314.74693515,
        303.12764303,  323.89328472,  314.94961971,  299.20789983,
        273.8819567 ,  288.80836748,  286.11135081,  298.06700589,
        300.07166341,  285.33627522,  283.19093034,  279.37086256,
        275.91586756,  263.8562697 ,  257.74809917,  256.14686083,
        263.95854789,  252.59037528,  268.15334953,  274.9059475 ,
        284.71280405,  300.30723605,  284.09199762,  291.99552277,
        275.0474266 ,  291.45711141,  227.05541186,  222.89813356,
        236.43453904,  298.06805992,  283.30520275,  281.33283859,
        264.38149504,  288.0526095 ,  240.17544836,  238.04166039,
        296.68615685,  286.13069114,  286.13593514,  275.86905022,
        278.3263923 ,  275.0675086 ,  276.26952486,  271.70009369,
        279.96735022,  281.1986893 ,  278.32490015,  270.76811166,
        276.43488508,  274.10143611,  272.86867791,  276.04961463,
        222.11427956,  238.07134739,  251.98184466,  231.36720176,
        240.01479704,  271.63104944,  225.60143714,  223.54829933,
        288.48238452,  290.60890892,  283.80835002,  289.67232643,
        282.81300472,  279.90831627,  288.17556596,  284.99397615]), weak=array([ 139.60649964,  145.69888253,  146.69171238,   74.76295875,
        142.27042686,  145.8456782 ,  140.08660981,  143.06275858,
        145.63787815,  145.14824484,  146.77218566,  155.96330382,
        144.47487368,  145.09646178,  138.60262025,  146.01659087,
        136.28585535,  137.81666382,  134.96383243,  138.38324757,
        132.05949777,  131.38178329,  132.129405  ,  131.42531706,
        134.6698605 ,  137.80075107,  139.34736823,  139.88752673,
        134.7233969 ,  143.95257098,  139.97760876,  132.98128881,
        121.72531409,  128.35927444,  127.16060036,  132.47422484,
        133.36518374,  126.81612232,  125.86263571,  124.1648278 ,
        122.62927447,  117.2694532 ,  114.55471074,  113.84304926,
        117.31491017,  112.26238901,  119.17926646,  122.18042111,
        126.53902402,  133.46988269,  126.26311005,  129.7757879 ,
        122.24330071,  129.53649396,  100.91351638,   99.06583714,
        105.08201735,  132.4746933 ,  125.91342345,  125.03681715,
        117.50288668,  128.023382  ,  106.74464371,  105.79629351,
        131.86051416,  127.16919606,  127.17152673,  122.60846676,
        123.7006188 ,  122.25222604,  122.78645549,  120.75559719,
        124.42993343,  124.97719525,  123.69995562,  120.34138296,
        122.85994892,  121.82286049,  121.27496796,  122.68871761,
         98.71745758,  105.80948773,  111.99193096,  102.82986745,
        106.67324313,  120.72491086,  100.2673054 ,   99.3547997 ,
        128.21439312,  129.15951507,  126.13704445,  128.74325619,
        125.69466876,  124.40369612,  128.07802932,  126.6639894 ]))
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2017-05-25 09:47:11  progressbar:97          0% complete, 30s elapsed, 54m 2s remaining. 394 spikes found.
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2017-05-25 09:47:42  progressbar:97          1% complete, 1m 0s elapsed, 54m 50s remaining. 1391 spikes found.
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2017-05-25 09:57:16  main:222                Processing chunk <Chunk (22398900/134804880), recording 0>...
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2017-05-25 09:58:16  progressbar:97          18% complete, 11m 35s elapsed, 51m 43s remaining. 25320 spikes found.
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2017-05-25 10:02:49  progressbar:97          25% complete, 16m 8s elapsed, 46m 27s remaining. 38295 spikes found.
2017-05-25 10:02:49  main:222                Processing chunk <Chunk (34750800/134804880), recording 0>...
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2017-05-25 10:03:19  progressbar:97          26% complete, 16m 38s elapsed, 46m 36s remaining. 41138 spikes found.
2017-05-25 10:03:19  main:222                Processing chunk <Chunk (35460000/134804880), recording 0>...
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2017-05-25 10:03:50  progressbar:97          26% complete, 17m 9s elapsed, 46m 40s remaining. 44136 spikes found.
2017-05-25 10:03:50  main:222                Processing chunk <Chunk (36228300/134804880), recording 0>...
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2017-05-25 10:04:20  progressbar:97          27% complete, 17m 39s elapsed, 46m 38s remaining. 46500 spikes found.
2017-05-25 10:04:20  main:222                Processing chunk <Chunk (37016300/134804880), recording 0>...
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2017-05-25 10:04:51  progressbar:97          27% complete, 18m 9s elapsed, 46m 48s remaining. 49259 spikes found.
2017-05-25 10:04:51  main:222                Processing chunk <Chunk (37686100/134804880), recording 0>...
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2017-05-25 10:05:21  progressbar:97          28% complete, 18m 39s elapsed, 46m 20s remaining. 50869 spikes found.
2017-05-25 10:05:21  main:222                Processing chunk <Chunk (38710500/134804880), recording 0>...
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2017-05-25 10:07:22  progressbar:97          31% complete, 20m 41s elapsed, 45m 1s remaining. 57226 spikes found.
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2017-05-25 10:07:52  progressbar:97          31% complete, 21m 11s elapsed, 45m 12s remaining. 59351 spikes found.
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2017-05-25 10:08:24  progressbar:97          32% complete, 21m 42s elapsed, 45m 9s remaining. 61517 spikes found.
2017-05-25 10:08:24  main:222                Processing chunk <Chunk (43773400/134804880), recording 0>...
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2017-05-25 10:08:54  progressbar:97          32% complete, 22m 12s elapsed, 45m 13s remaining. 63852 spikes found.
2017-05-25 10:08:54  main:222                Processing chunk <Chunk (44403800/134804880), recording 0>...
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2017-05-25 10:09:24  progressbar:97          33% complete, 22m 43s elapsed, 45m 21s remaining. 65824 spikes found.
2017-05-25 10:09:24  main:222                Processing chunk <Chunk (44994800/134804880), recording 0>...
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2017-05-25 10:09:55  progressbar:97          34% complete, 23m 14s elapsed, 45m 6s remaining. 67937 spikes found.
2017-05-25 10:09:55  main:222                Processing chunk <Chunk (45841900/134804880), recording 0>...
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2017-05-25 10:10:25  progressbar:97          34% complete, 23m 44s elapsed, 44m 39s remaining. 69555 spikes found.
2017-05-25 10:10:25  main:222                Processing chunk <Chunk (46787500/134804880), recording 0>...
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2017-05-25 10:10:55  progressbar:97          35% complete, 24m 14s elapsed, 44m 26s remaining. 71763 spikes found.
2017-05-25 10:10:55  main:222                Processing chunk <Chunk (47575500/134804880), recording 0>...
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2017-05-25 10:11:26  progressbar:97          35% complete, 24m 44s elapsed, 44m 25s remaining. 73689 spikes found.
2017-05-25 10:11:26  main:222                Processing chunk <Chunk (48225600/134804880), recording 0>...
2017-05-25 10:11:27  main:222                Processing chunk <Chunk (48245300/134804880), recording 0>...
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2017-05-25 10:11:56  progressbar:97          36% complete, 25m 15s elapsed, 44m 27s remaining. 76055 spikes found.
2017-05-25 10:11:56  main:222                Processing chunk <Chunk (48836300/134804880), recording 0>...
2017-05-25 10:11:57  main:222                Processing chunk <Chunk (48856000/134804880), recording 0>...
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2017-05-25 10:12:27  progressbar:97          36% complete, 25m 46s elapsed, 44m 19s remaining. 78098 spikes found.
2017-05-25 10:12:27  main:222                Processing chunk <Chunk (49565200/134804880), recording 0>...
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2017-05-25 10:12:57  progressbar:97          37% complete, 26m 16s elapsed, 44m 14s remaining. 80214 spikes found.
2017-05-25 10:12:57  main:222                Processing chunk <Chunk (50235000/134804880), recording 0>...
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2017-05-25 10:13:28  progressbar:97          37% complete, 26m 46s elapsed, 44m 11s remaining. 82286 spikes found.
2017-05-25 10:13:28  main:222                Processing chunk <Chunk (50865400/134804880), recording 0>...
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2017-05-25 10:14:00  progressbar:97          38% complete, 27m 19s elapsed, 44m 15s remaining. 84552 spikes found.
2017-05-25 10:14:00  main:222                Processing chunk <Chunk (51456400/134804880), recording 0>...
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2017-05-25 10:14:30  progressbar:97          38% complete, 27m 49s elapsed, 43m 48s remaining. 85675 spikes found.
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2017-05-25 10:15:01  progressbar:97          39% complete, 28m 20s elapsed, 43m 36s remaining. 87645 spikes found.
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2017-05-25 10:15:31  progressbar:97          39% complete, 28m 50s elapsed, 43m 25s remaining. 89990 spikes found.
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2017-05-25 10:16:02  progressbar:97          40% complete, 29m 21s elapsed, 43m 14s remaining. 92691 spikes found.
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2017-05-25 10:16:32  progressbar:97          40% complete, 29m 51s elapsed, 42m 59s remaining. 94959 spikes found.
2017-05-25 10:16:32  main:222                Processing chunk <Chunk (55258500/134804880), recording 0>...
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2017-05-25 10:17:03  progressbar:97          41% complete, 30m 22s elapsed, 42m 51s remaining. 97072 spikes found.
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2017-05-25 10:17:33  progressbar:97          41% complete, 30m 52s elapsed, 42m 44s remaining. 99084 spikes found.
2017-05-25 10:17:33  main:222                Processing chunk <Chunk (56539000/134804880), recording 0>...
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2017-05-25 10:18:04  progressbar:97          42% complete, 31m 23s elapsed, 42m 31s remaining. 101116 spikes found.
2017-05-25 10:18:04  main:222                Processing chunk <Chunk (57248200/134804880), recording 0>...
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2017-05-25 10:18:35  progressbar:97          42% complete, 31m 54s elapsed, 42m 24s remaining. 103037 spikes found.
2017-05-25 10:18:35  main:222                Processing chunk <Chunk (57878600/134804880), recording 0>...
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2017-05-25 10:19:05  progressbar:97          43% complete, 32m 24s elapsed, 42m 14s remaining. 105278 spikes found.
2017-05-25 10:19:05  main:222                Processing chunk <Chunk (58528700/134804880), recording 0>...
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2017-05-25 10:19:36  progressbar:97          43% complete, 32m 55s elapsed, 42m 1s remaining. 107160 spikes found.
2017-05-25 10:19:36  main:222                Processing chunk <Chunk (59218200/134804880), recording 0>...
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2017-05-25 10:20:07  progressbar:97          44% complete, 33m 25s elapsed, 41m 49s remaining. 109040 spikes found.
2017-05-25 10:20:07  main:222                Processing chunk <Chunk (59888000/134804880), recording 0>...
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2017-05-25 10:20:37  progressbar:97          44% complete, 33m 56s elapsed, 41m 33s remaining. 111184 spikes found.
2017-05-25 10:20:37  main:222                Processing chunk <Chunk (60597200/134804880), recording 0>...
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2017-05-25 10:22:38  progressbar:97          47% complete, 35m 57s elapsed, 39m 36s remaining. 117412 spikes found.
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2017-05-25 10:23:09  progressbar:97          48% complete, 36m 28s elapsed, 39m 18s remaining. 119176 spikes found.
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2017-05-25 10:24:40  progressbar:97          49% complete, 37m 59s elapsed, 38m 26s remaining. 124955 spikes found.
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2017-05-25 10:25:11  progressbar:97          50% complete, 38m 29s elapsed, 38m 4s remaining. 126853 spikes found.
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2017-05-25 10:25:41  progressbar:97          50% complete, 39m 0s elapsed, 37m 51s remaining. 128795 spikes found.
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2017-05-25 10:26:11  progressbar:97          51% complete, 39m 30s elapsed, 37m 28s remaining. 130730 spikes found.
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2017-05-25 10:26:42  progressbar:97          51% complete, 40m 0s elapsed, 37m 0s remaining. 132954 spikes found.
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2017-05-25 10:27:12  progressbar:97          52% complete, 40m 31s elapsed, 36m 43s remaining. 135193 spikes found.
2017-05-25 10:27:12  main:222                Processing chunk <Chunk (70723000/134804880), recording 0>...
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2017-05-25 10:27:42  progressbar:97          53% complete, 41m 1s elapsed, 36m 22s remaining. 136957 spikes found.
2017-05-25 10:27:42  main:222                Processing chunk <Chunk (71451900/134804880), recording 0>...
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2017-05-25 10:28:13  progressbar:97          53% complete, 41m 32s elapsed, 36m 4s remaining. 138818 spikes found.
2017-05-25 10:28:13  main:222                Processing chunk <Chunk (72141400/134804880), recording 0>...
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2017-05-25 10:28:44  progressbar:97          54% complete, 42m 2s elapsed, 35m 46s remaining. 140938 spikes found.
2017-05-25 10:28:44  main:222                Processing chunk <Chunk (72830900/134804880), recording 0>...
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2017-05-25 10:29:15  progressbar:97          54% complete, 42m 34s elapsed, 35m 23s remaining. 142751 spikes found.
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2017-05-25 10:29:46  progressbar:97          55% complete, 43m 5s elapsed, 35m 7s remaining. 144995 spikes found.
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2017-05-25 10:30:17  progressbar:97          55% complete, 43m 36s elapsed, 34m 48s remaining. 146937 spikes found.
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2017-05-25 10:30:48  progressbar:97          56% complete, 44m 6s elapsed, 34m 29s remaining. 148843 spikes found.
2017-05-25 10:30:48  main:222                Processing chunk <Chunk (75648000/134804880), recording 0>...
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2017-05-25 10:31:18  progressbar:97          56% complete, 44m 37s elapsed, 34m 4s remaining. 151243 spikes found.
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2017-05-25 10:31:49  progressbar:97          57% complete, 45m 8s elapsed, 33m 39s remaining. 153796 spikes found.
2017-05-25 10:31:49  main:222                Processing chunk <Chunk (77224000/134804880), recording 0>...
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2017-05-25 10:32:19  progressbar:97          57% complete, 45m 38s elapsed, 33m 6s remaining. 155695 spikes found.
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2017-05-25 10:32:49  progressbar:97          58% complete, 46m 8s elapsed, 32m 45s remaining. 157547 spikes found.
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2017-05-25 10:33:19  progressbar:97          59% complete, 46m 38s elapsed, 32m 23s remaining. 159556 spikes found.
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2017-05-25 10:33:50  progressbar:97          59% complete, 47m 9s elapsed, 32m 5s remaining. 161223 spikes found.
2017-05-25 10:33:50  main:222                Processing chunk <Chunk (80218400/134804880), recording 0>...
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2017-05-25 10:34:21  progressbar:97          60% complete, 47m 40s elapsed, 31m 43s remaining. 163441 spikes found.
2017-05-25 10:34:21  main:222                Processing chunk <Chunk (80947300/134804880), recording 0>...
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2017-05-25 10:34:52  progressbar:97          60% complete, 48m 11s elapsed, 31m 24s remaining. 165290 spikes found.
2017-05-25 10:34:52  main:222                Processing chunk <Chunk (81617100/134804880), recording 0>...
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2017-05-25 10:35:23  progressbar:97          61% complete, 48m 41s elapsed, 31m 0s remaining. 167249 spikes found.
2017-05-25 10:35:23  main:222                Processing chunk <Chunk (82365700/134804880), recording 0>...
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2017-05-25 10:35:53  progressbar:97          61% complete, 49m 12s elapsed, 30m 37s remaining. 168937 spikes found.
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2017-05-25 10:36:53  progressbar:97          62% complete, 50m 12s elapsed, 29m 47s remaining. 172913 spikes found.
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2017-05-25 10:37:24  progressbar:97          63% complete, 50m 42s elapsed, 29m 8s remaining. 174549 spikes found.
2017-05-25 10:37:24  main:222                Processing chunk <Chunk (85616200/134804880), recording 0>...
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2017-05-25 10:37:54  progressbar:97          64% complete, 51m 12s elapsed, 28m 41s remaining. 176425 spikes found.
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2017-05-25 10:38:24  progressbar:97          64% complete, 51m 42s elapsed, 28m 28s remaining. 178173 spikes found.
2017-05-25 10:38:24  main:222                Processing chunk <Chunk (86936100/134804880), recording 0>...
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2017-05-25 10:38:54  progressbar:97          64% complete, 52m 13s elapsed, 28m 14s remaining. 179913 spikes found.
2017-05-25 10:38:54  main:222                Processing chunk <Chunk (87487700/134804880), recording 0>...
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2017-05-25 10:39:25  progressbar:97          65% complete, 52m 44s elapsed, 27m 58s remaining. 181917 spikes found.
2017-05-25 10:39:25  main:222                Processing chunk <Chunk (88078700/134804880), recording 0>...
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2017-05-25 10:39:56  progressbar:97          65% complete, 53m 15s elapsed, 27m 44s remaining. 183780 spikes found.
2017-05-25 10:39:56  main:222                Processing chunk <Chunk (88630300/134804880), recording 0>...
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2017-05-25 10:40:26  progressbar:97          66% complete, 53m 45s elapsed, 27m 27s remaining. 185696 spikes found.
2017-05-25 10:40:26  main:222                Processing chunk <Chunk (89221300/134804880), recording 0>...
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2017-05-25 10:40:57  progressbar:97          66% complete, 54m 16s elapsed, 27m 9s remaining. 187696 spikes found.
2017-05-25 10:40:57  main:222                Processing chunk <Chunk (89851700/134804880), recording 0>...
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2017-05-25 10:41:27  progressbar:97          67% complete, 54m 46s elapsed, 26m 51s remaining. 189677 spikes found.
2017-05-25 10:41:27  main:222                Processing chunk <Chunk (90462400/134804880), recording 0>...
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2017-05-25 10:41:58  progressbar:97          67% complete, 55m 17s elapsed, 26m 30s remaining. 191455 spikes found.
2017-05-25 10:41:58  main:222                Processing chunk <Chunk (91112500/134804880), recording 0>...
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2017-05-25 10:44:30  progressbar:97          70% complete, 57m 49s elapsed, 24m 26s remaining. 199661 spikes found.
2017-05-25 10:44:30  main:222                Processing chunk <Chunk (94757000/134804880), recording 0>...
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2017-05-25 11:00:04  progressbar:97          100% complete, 1h 13m 23s elapsed, 0s remaining. 224340 spikes found.