2017-05-30 06:18:16  main:187                Starting SpikeDetekt version 0.3.0 on <DatRawReader /mnt/packrat/userdirs/david/zpool1/DT9/20170525_900um_936um_170525_150124/20170525_900um_936um_170525_150124.dat>
2017-05-30 06:18:16  main:188                Parameters: 
{'__doc__': 'Contain default parameters.',
 'canonical_pcs': None,
 'chunk_overlap': 300,
 'chunk_size': 20000,
 'connected_component_join_size': 1,
 'detect_spikes': 'negative',
 'diagnostics_path': None,
 'excerpt_size': 20000,
 'experiment_name': '/mnt/packrat/userdirs/david/zpool1/DT9/20170525_900um_936um_170525_150124/5/20170525_900um_936um_170525_150124_sh5',
 'extract_s_after': 16,
 'extract_s_before': 16,
 'features_contiguous': True,
 'filter_butter_order': 3,
 'filter_high': 9500.0,
 'filter_low': 600.0,
 'nbits': 16,
 'nchannels': 96,
 'nexcerpts': 60,
 'nfeatures_per_channel': 6,
 'pca_nwaveforms_max': 20000,
 'prb_file': '5.prb',
 'raw_data_files': ['/mnt/packrat/userdirs/david/zpool1/DT9/20170525_900um_936um_170525_150124/20170525_900um_936um_170525_150124.dat'],
 'sample_rate': 20000.0,
 'save_high': False,
 'save_low': False,
 'save_raw': False,
 'threshold_strong_std_factor': 4.5,
 'threshold_weak_std_factor': 2.0,
 'use_single_threshold': False,
 'voltage_gain': 10.0,
 'waveforms_nsamples': 32,
 'weight_power': 2}
2017-05-30 06:18:51  main:200                Threshold: DoubleThreshold(strong=array([ 292.88499156,  304.09357775,  317.7097731 ,  155.22094229,
        299.4712243 ,  307.79612975,  304.84975125,  301.38405124,
        301.29887758,  301.55111999,  301.75742301,  315.72179077,
        305.45817574,  319.70013836,  305.41988653,  309.29167855,
        294.08658203,  290.19427331,  287.93442134,  285.63455499,
        283.02062439,  284.1549173 ,  271.97360669,  275.64318029,
        286.40914964,  296.58385799,  298.16258903,  291.74306795,
        289.90923597,  300.09333258,  302.53002471,  294.83005219,
        285.19300762,  278.60678893,  277.1425438 ,  284.68655434,
        282.94198111,  283.80357444,  280.48166331,  294.8297283 ,
        245.5462831 ,  241.5016578 ,  254.18981571,  262.59251287,
        271.93825572,  253.50013489,  247.65703134,  251.75049264,
        260.61787994,  275.21515561,  256.49722134,  271.98496771,
        255.13702364,  256.39971861,  257.60820952,  227.18305482,
        273.72986832,  252.19790505,  274.03258383,  266.10346395,
        269.27751498,  269.33897   ,  262.12949524,  279.53989188,
        278.5421821 ,  268.08923135,  269.17538449,  262.75139224,
        256.10735057,  250.72900687,  255.06479014,  259.29930123,
        264.09292249,  266.73669355,  259.02715461,  255.84344101,
        260.89905641,  265.2175779 ,  253.61287405,  256.07513776,
        232.38524409,  224.84335262,  243.35479317,  234.78621148,
        220.35517147,  253.69475919,  209.01622835,  213.40073146,
        271.74318434,  277.46110537,  260.53523254,  266.81458008,
        263.62422302,  256.5495267 ,  263.26562518,  264.63460535]), weak=array([ 130.17110736,  135.15270122,  141.2043436 ,   68.98708546,
        133.09832191,  136.79827989,  135.48877833,  133.94846722,
        133.91061226,  134.02272   ,  134.11441023,  140.3207959 ,
        135.75918922,  142.08895038,  135.74217179,  137.46296824,
        130.70514757,  128.97523258,  127.97085393,  126.94869111,
        125.78694417,  126.29107436,  120.87715853,  122.50808013,
        127.29295539,  131.815048  ,  132.51670623,  129.66358575,
        128.84854932,  133.37481448,  134.45778876,  131.03557875,
        126.75244783,  123.82523952,  123.17446391,  126.52735748,
        125.75199161,  126.13492197,  124.65851703,  131.0354348 ,
        109.13168138,  107.33407013,  112.97325143,  116.7077835 ,
        120.86144698,  112.66672662,  110.06979171,  111.88910784,
        115.83016886,  122.31784694,  113.99876504,  120.88220787,
        113.39423273,  113.95543049,  114.49253756,  100.97024659,
        121.65771925,  112.0879578 ,  121.79225948,  118.2682062 ,
        119.67889554,  119.70620889,  116.50199789,  124.23995195,
        123.79652538,  119.15076949,  119.63350422,  116.77839655,
        113.82548914,  111.43511416,  113.36212895,  115.24413388,
        117.37463222,  118.54964158,  115.12317983,  113.70819601,
        115.95513618,  117.87447907,  112.71683291,  113.81117234,
        103.28233071,   99.93037894,  108.15768585,  104.34942733,
         97.93563176,  112.75322631,   92.89610149,   94.84476954,
        120.7747486 ,  123.31604683,  115.79343668,  118.58425781,
        117.16632134,  114.02201186,  117.00694452,  117.61538015]))
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2017-05-30 06:26:25  progressbar:97          13% complete, 7m 33s elapsed, 47m 15s remaining. 2823 spikes found.
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2017-05-30 06:27:56  progressbar:97          16% complete, 9m 4s elapsed, 47m 29s remaining. 2966 spikes found.
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2017-05-30 06:28:26  progressbar:97          16% complete, 9m 34s elapsed, 47m 34s remaining. 3155 spikes found.
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2017-05-30 06:28:56  progressbar:97          17% complete, 10m 5s elapsed, 47m 27s remaining. 3244 spikes found.
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2017-05-30 06:35:00  progressbar:97          28% complete, 16m 8s elapsed, 40m 40s remaining. 4701 spikes found.
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2017-05-30 06:35:30  progressbar:97          29% complete, 16m 38s elapsed, 40m 30s remaining. 4814 spikes found.
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2017-05-30 06:36:01  progressbar:97          29% complete, 17m 9s elapsed, 40m 27s remaining. 4869 spikes found.
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2017-05-30 06:37:01  progressbar:97          31% complete, 18m 9s elapsed, 40m 4s remaining. 5121 spikes found.
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2017-05-30 06:38:02  progressbar:97          32% complete, 19m 11s elapsed, 39m 36s remaining. 5637 spikes found.
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2017-05-30 06:38:33  progressbar:97          33% complete, 19m 41s elapsed, 39m 21s remaining. 5820 spikes found.
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2017-05-30 06:39:04  progressbar:97          34% complete, 20m 12s elapsed, 39m 11s remaining. 6372 spikes found.
2017-05-30 06:39:04  main:222                Processing chunk <Chunk (48816600/143507520), recording 0>...
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2017-05-30 06:39:34  progressbar:97          34% complete, 20m 42s elapsed, 39m 0s remaining. 6714 spikes found.
2017-05-30 06:39:34  main:222                Processing chunk <Chunk (49762200/143507520), recording 0>...
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2017-05-30 06:40:04  progressbar:97          35% complete, 21m 12s elapsed, 38m 39s remaining. 6776 spikes found.
2017-05-30 06:40:04  main:222                Processing chunk <Chunk (50845700/143507520), recording 0>...
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2017-05-30 06:40:35  progressbar:97          36% complete, 21m 43s elapsed, 38m 27s remaining. 6876 spikes found.
2017-05-30 06:40:35  main:222                Processing chunk <Chunk (51811000/143507520), recording 0>...
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2017-05-30 06:42:06  progressbar:97          38% complete, 23m 14s elapsed, 37m 53s remaining. 7551 spikes found.
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2017-05-30 06:42:36  progressbar:97          38% complete, 23m 44s elapsed, 37m 39s remaining. 7831 spikes found.
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2017-05-30 06:43:07  progressbar:97          39% complete, 24m 15s elapsed, 37m 31s remaining. 8061 spikes found.
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2017-05-30 06:46:09  progressbar:97          43% complete, 27m 17s elapsed, 35m 40s remaining. 9092 spikes found.
2017-05-30 06:46:09  main:222                Processing chunk <Chunk (62192900/143507520), recording 0>...
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2017-05-30 06:46:39  progressbar:97          44% complete, 27m 47s elapsed, 35m 18s remaining. 9120 spikes found.
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2017-05-30 06:47:09  progressbar:97          44% complete, 28m 17s elapsed, 34m 55s remaining. 9156 spikes found.
2017-05-30 06:47:09  main:222                Processing chunk <Chunk (64222000/143507520), recording 0>...
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2017-05-30 06:47:39  progressbar:97          45% complete, 28m 48s elapsed, 34m 37s remaining. 9212 spikes found.
2017-05-30 06:47:39  main:222                Processing chunk <Chunk (65167600/143507520), recording 0>...
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2017-05-30 06:49:41  progressbar:97          48% complete, 30m 49s elapsed, 33m 17s remaining. 9553 spikes found.
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2017-05-30 06:50:11  progressbar:97          48% complete, 31m 20s elapsed, 32m 49s remaining. 9610 spikes found.
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2017-05-30 06:50:41  progressbar:97          49% complete, 31m 50s elapsed, 32m 28s remaining. 9653 spikes found.
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2017-05-30 06:51:12  progressbar:97          50% complete, 32m 20s elapsed, 32m 5s remaining. 9668 spikes found.
2017-05-30 06:51:12  main:222                Processing chunk <Chunk (72042900/143507520), recording 0>...
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2017-05-30 06:51:42  progressbar:97          50% complete, 32m 50s elapsed, 31m 45s remaining. 9911 spikes found.
2017-05-30 06:51:42  main:222                Processing chunk <Chunk (72968800/143507520), recording 0>...
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2017-05-30 06:52:13  progressbar:97          51% complete, 33m 21s elapsed, 31m 18s remaining. 10061 spikes found.
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2017-05-30 06:53:13  progressbar:97          52% complete, 34m 22s elapsed, 30m 33s remaining. 10113 spikes found.
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2017-05-30 06:53:44  progressbar:97          53% complete, 34m 52s elapsed, 30m 1s remaining. 10126 spikes found.
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2017-05-30 06:54:14  progressbar:97          54% complete, 35m 22s elapsed, 29m 33s remaining. 10195 spikes found.
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2017-05-30 06:59:16  progressbar:97          61% complete, 40m 25s elapsed, 25m 44s remaining. 11858 spikes found.
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2017-05-30 06:59:46  progressbar:97          61% complete, 40m 55s elapsed, 25m 16s remaining. 12038 spikes found.
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2017-05-30 07:00:17  progressbar:97          62% complete, 41m 25s elapsed, 24m 41s remaining. 12079 spikes found.
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2017-05-30 07:00:47  progressbar:97          63% complete, 41m 55s elapsed, 24m 17s remaining. 12179 spikes found.
2017-05-30 07:00:47  main:222                Processing chunk <Chunk (90856400/143507520), recording 0>...
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2017-05-30 07:01:17  progressbar:97          64% complete, 42m 25s elapsed, 23m 50s remaining. 12276 spikes found.
2017-05-30 07:01:17  main:222                Processing chunk <Chunk (91880800/143507520), recording 0>...
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2017-05-30 07:01:47  progressbar:97          64% complete, 42m 56s elapsed, 23m 22s remaining. 12564 spikes found.
2017-05-30 07:01:47  main:222                Processing chunk <Chunk (92924900/143507520), recording 0>...
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2017-05-30 07:02:18  progressbar:97          65% complete, 43m 26s elapsed, 22m 56s remaining. 12694 spikes found.
2017-05-30 07:02:18  main:222                Processing chunk <Chunk (93909900/143507520), recording 0>...
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2017-05-30 07:02:48  progressbar:97          66% complete, 43m 57s elapsed, 22m 33s remaining. 13475 spikes found.
2017-05-30 07:02:48  main:222                Processing chunk <Chunk (94835800/143507520), recording 0>...
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2017-05-30 07:03:19  progressbar:97          66% complete, 44m 27s elapsed, 22m 5s remaining. 13674 spikes found.
2017-05-30 07:03:19  main:222                Processing chunk <Chunk (95879900/143507520), recording 0>...
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2017-05-30 07:03:49  progressbar:97          67% complete, 44m 57s elapsed, 21m 39s remaining. 14262 spikes found.
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2017-05-30 07:04:19  progressbar:97          68% complete, 45m 28s elapsed, 21m 14s remaining. 14412 spikes found.
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2017-05-30 07:04:50  progressbar:97          68% complete, 45m 58s elapsed, 20m 50s remaining. 14964 spikes found.
2017-05-30 07:04:50  main:222                Processing chunk <Chunk (98756100/143507520), recording 0>...
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2017-05-30 07:05:20  progressbar:97          69% complete, 46m 29s elapsed, 20m 26s remaining. 15243 spikes found.
2017-05-30 07:05:20  main:222                Processing chunk <Chunk (99682000/143507520), recording 0>...
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2017-05-30 07:05:51  progressbar:97          70% complete, 47m 0s elapsed, 20m 5s remaining. 16244 spikes found.
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2017-05-30 07:06:22  progressbar:97          70% complete, 47m 30s elapsed, 19m 57s remaining. 18222 spikes found.
2017-05-30 07:06:22  main:222                Processing chunk <Chunk (101061000/143507520), recording 0>...
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2017-05-30 07:06:52  progressbar:97          70% complete, 48m 0s elapsed, 19m 46s remaining. 20079 spikes found.
2017-05-30 07:06:52  main:222                Processing chunk <Chunk (101652000/143507520), recording 0>...
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2017-05-30 07:07:22  progressbar:97          71% complete, 48m 31s elapsed, 19m 35s remaining. 22128 spikes found.
2017-05-30 07:07:22  main:222                Processing chunk <Chunk (102223300/143507520), recording 0>...
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2017-05-30 07:07:53  progressbar:97          71% complete, 49m 1s elapsed, 19m 23s remaining. 23535 spikes found.
2017-05-30 07:07:53  main:222                Processing chunk <Chunk (102834000/143507520), recording 0>...
2017-05-30 07:07:54  main:222                Processing chunk <Chunk (102853700/143507520), recording 0>...
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2017-05-30 07:08:24  progressbar:97          72% complete, 49m 32s elapsed, 19m 8s remaining. 25141 spikes found.
2017-05-30 07:08:24  main:222                Processing chunk <Chunk (103523500/143507520), recording 0>...
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2017-05-30 07:08:55  progressbar:97          72% complete, 50m 3s elapsed, 18m 54s remaining. 27084 spikes found.
2017-05-30 07:08:55  main:222                Processing chunk <Chunk (104153900/143507520), recording 0>...
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2017-05-30 07:09:26  progressbar:97          72% complete, 50m 34s elapsed, 18m 44s remaining. 29173 spikes found.
2017-05-30 07:09:26  main:222                Processing chunk <Chunk (104705500/143507520), recording 0>...
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2017-05-30 07:09:56  progressbar:97          73% complete, 51m 4s elapsed, 18m 28s remaining. 30758 spikes found.
2017-05-30 07:09:56  main:222                Processing chunk <Chunk (105375300/143507520), recording 0>...
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2017-05-30 07:10:27  progressbar:97          73% complete, 51m 35s elapsed, 18m 14s remaining. 32536 spikes found.
2017-05-30 07:10:27  main:222                Processing chunk <Chunk (106025400/143507520), recording 0>...
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2017-05-30 07:10:58  progressbar:97          74% complete, 52m 6s elapsed, 17m 58s remaining. 34562 spikes found.
2017-05-30 07:10:58  main:222                Processing chunk <Chunk (106695200/143507520), recording 0>...
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2017-05-30 07:11:28  progressbar:97          74% complete, 52m 37s elapsed, 17m 40s remaining. 36043 spikes found.
2017-05-30 07:11:28  main:222                Processing chunk <Chunk (107424100/143507520), recording 0>...
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2017-05-30 07:11:59  progressbar:97          75% complete, 53m 7s elapsed, 17m 23s remaining. 38038 spikes found.
2017-05-30 07:11:59  main:222                Processing chunk <Chunk (108113600/143507520), recording 0>...
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2017-05-30 07:12:30  progressbar:97          75% complete, 53m 39s elapsed, 17m 2s remaining. 38933 spikes found.
2017-05-30 07:12:30  main:222                Processing chunk <Chunk (108901600/143507520), recording 0>...
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2017-05-30 07:13:02  progressbar:97          76% complete, 54m 10s elapsed, 16m 45s remaining. 40677 spikes found.
2017-05-30 07:13:02  main:222                Processing chunk <Chunk (109591100/143507520), recording 0>...
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2017-05-30 07:13:33  progressbar:97          76% complete, 54m 41s elapsed, 16m 26s remaining. 42263 spikes found.
2017-05-30 07:13:33  main:222                Processing chunk <Chunk (110339700/143507520), recording 0>...
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2017-05-30 07:14:03  progressbar:97          77% complete, 55m 12s elapsed, 16m 11s remaining. 44465 spikes found.
2017-05-30 07:14:03  main:222                Processing chunk <Chunk (110970100/143507520), recording 0>...
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2017-05-30 07:14:34  progressbar:97          77% complete, 55m 42s elapsed, 15m 59s remaining. 46336 spikes found.
2017-05-30 07:14:34  main:222                Processing chunk <Chunk (111502000/143507520), recording 0>...
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2017-05-30 07:15:04  progressbar:97          78% complete, 56m 12s elapsed, 15m 41s remaining. 47678 spikes found.
2017-05-30 07:15:04  main:222                Processing chunk <Chunk (112191500/143507520), recording 0>...
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2017-05-30 07:15:36  progressbar:97          78% complete, 56m 44s elapsed, 15m 23s remaining. 49904 spikes found.
2017-05-30 07:15:36  main:222                Processing chunk <Chunk (112881000/143507520), recording 0>...
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2017-05-30 07:16:06  progressbar:97          79% complete, 57m 14s elapsed, 15m 9s remaining. 52008 spikes found.
2017-05-30 07:16:06  main:222                Processing chunk <Chunk (113452300/143507520), recording 0>...
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2017-05-30 07:16:36  progressbar:97          79% complete, 57m 45s elapsed, 14m 51s remaining. 54414 spikes found.
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2017-05-30 07:17:07  progressbar:97          79% complete, 58m 16s elapsed, 14m 37s remaining. 56483 spikes found.
2017-05-30 07:17:07  main:222                Processing chunk <Chunk (114713100/143507520), recording 0>...
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2017-05-30 07:17:38  progressbar:97          80% complete, 58m 46s elapsed, 14m 19s remaining. 58768 spikes found.
2017-05-30 07:17:38  main:222                Processing chunk <Chunk (115382900/143507520), recording 0>...
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2017-05-30 07:18:09  progressbar:97          80% complete, 59m 17s elapsed, 14m 2s remaining. 60873 spikes found.
2017-05-30 07:18:09  main:222                Processing chunk <Chunk (116033000/143507520), recording 0>...
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2017-05-30 07:18:40  progressbar:97          81% complete, 59m 48s elapsed, 13m 42s remaining. 63127 spikes found.
2017-05-30 07:18:40  main:222                Processing chunk <Chunk (116742200/143507520), recording 0>...
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2017-05-30 07:19:10  progressbar:97          81% complete, 1h 0m 18s elapsed, 13m 21s remaining. 64962 spikes found.
2017-05-30 07:19:10  main:222                Processing chunk <Chunk (117490800/143507520), recording 0>...
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2017-05-30 07:19:41  progressbar:97          82% complete, 1h 0m 49s elapsed, 13m 3s remaining. 67079 spikes found.
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2017-05-30 07:20:12  progressbar:97          82% complete, 1h 1m 20s elapsed, 12m 45s remaining. 69108 spikes found.
2017-05-30 07:20:12  main:222                Processing chunk <Chunk (118791000/143507520), recording 0>...
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2017-05-30 07:20:42  progressbar:97          83% complete, 1h 1m 50s elapsed, 12m 22s remaining. 71004 spikes found.
2017-05-30 07:20:42  main:222                Processing chunk <Chunk (119579000/143507520), recording 0>...
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2017-05-30 07:21:12  progressbar:97          83% complete, 1h 2m 20s elapsed, 11m 56s remaining. 72332 spikes found.
2017-05-30 07:21:12  main:222                Processing chunk <Chunk (120426100/143507520), recording 0>...
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2017-05-30 07:21:43  progressbar:97          84% complete, 1h 2m 51s elapsed, 11m 30s remaining. 74242 spikes found.
2017-05-30 07:21:43  main:222                Processing chunk <Chunk (121292900/143507520), recording 0>...
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2017-05-30 07:22:13  progressbar:97          84% complete, 1h 3m 22s elapsed, 11m 11s remaining. 76248 spikes found.
2017-05-30 07:22:13  main:222                Processing chunk <Chunk (121962700/143507520), recording 0>...
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2017-05-30 07:22:43  progressbar:97          85% complete, 1h 3m 52s elapsed, 10m 51s remaining. 78107 spikes found.
2017-05-30 07:22:43  main:222                Processing chunk <Chunk (122652200/143507520), recording 0>...
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2017-05-30 07:23:14  progressbar:97          85% complete, 1h 4m 23s elapsed, 10m 30s remaining. 80094 spikes found.
2017-05-30 07:23:14  main:222                Processing chunk <Chunk (123381100/143507520), recording 0>...
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2017-05-30 07:23:45  progressbar:97          86% complete, 1h 4m 53s elapsed, 10m 9s remaining. 82081 spikes found.
2017-05-30 07:23:45  main:222                Processing chunk <Chunk (124090300/143507520), recording 0>...
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2017-05-30 07:24:16  progressbar:97          86% complete, 1h 5m 24s elapsed, 9m 50s remaining. 84129 spikes found.
2017-05-30 07:24:16  main:222                Processing chunk <Chunk (124740400/143507520), recording 0>...
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2017-05-30 07:24:46  progressbar:97          87% complete, 1h 5m 55s elapsed, 9m 27s remaining. 86111 spikes found.
2017-05-30 07:24:46  main:222                Processing chunk <Chunk (125508700/143507520), recording 0>...
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2017-05-30 07:25:17  progressbar:97          87% complete, 1h 6m 25s elapsed, 9m 5s remaining. 87985 spikes found.
2017-05-30 07:25:17  main:222                Processing chunk <Chunk (126217900/143507520), recording 0>...
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2017-05-30 07:25:48  progressbar:97          88% complete, 1h 6m 56s elapsed, 8m 45s remaining. 90152 spikes found.
2017-05-30 07:25:48  main:222                Processing chunk <Chunk (126907400/143507520), recording 0>...
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2017-05-30 07:26:18  progressbar:97          88% complete, 1h 7m 26s elapsed, 8m 21s remaining. 91816 spikes found.
2017-05-30 07:26:18  main:222                Processing chunk <Chunk (127675700/143507520), recording 0>...
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2017-05-30 07:26:48  progressbar:97          89% complete, 1h 7m 56s elapsed, 8m 2s remaining. 94131 spikes found.
2017-05-30 07:26:48  main:222                Processing chunk <Chunk (128325800/143507520), recording 0>...
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2017-05-30 07:27:18  progressbar:97          89% complete, 1h 8m 27s elapsed, 7m 44s remaining. 96118 spikes found.
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2017-05-30 07:27:49  progressbar:97          90% complete, 1h 8m 57s elapsed, 7m 24s remaining. 98211 spikes found.
2017-05-30 07:27:49  main:222                Processing chunk <Chunk (129586600/143507520), recording 0>...
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2017-05-30 07:28:19  progressbar:97          90% complete, 1h 9m 27s elapsed, 7m 3s remaining. 100341 spikes found.
2017-05-30 07:28:19  main:222                Processing chunk <Chunk (130276100/143507520), recording 0>...
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2017-05-30 07:33:22  progressbar:97          98% complete, 1h 14m 31s elapsed, 1m 0s remaining. 111606 spikes found.
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2017-05-30 07:33:53  progressbar:97          99% complete, 1h 15m 1s elapsed, 18s remaining. 111705 spikes found.
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2017-05-30 07:34:04  progressbar:97          100% complete, 1h 15m 12s elapsed, 0s remaining. 111767 spikes found.