2017-05-29 16:31:17  main:187                Starting SpikeDetekt version 0.3.0 on <DatRawReader /mnt/packrat/userdirs/david/zpool1/DT9/20170530_1656um_1144um_170529_154105/20170530_1656um_1144um_170529_154105.dat>
2017-05-29 16:31:17  main:188                Parameters: 
{'__doc__': 'Contain default parameters.',
 'canonical_pcs': None,
 'chunk_overlap': 300,
 'chunk_size': 20000,
 'connected_component_join_size': 1,
 'detect_spikes': 'negative',
 'diagnostics_path': None,
 'excerpt_size': 20000,
 'experiment_name': '/mnt/packrat/userdirs/david/zpool1/DT9/20170530_1656um_1144um_170529_154105/1/20170530_1656um_1144um_170529_154105_sh1',
 'extract_s_after': 16,
 'extract_s_before': 16,
 'features_contiguous': True,
 'filter_butter_order': 3,
 'filter_high': 9500.0,
 'filter_low': 600.0,
 'nbits': 16,
 'nchannels': 96,
 'nexcerpts': 60,
 'nfeatures_per_channel': 5,
 'pca_nwaveforms_max': 20000,
 'prb_file': '1.prb',
 'raw_data_files': ['/mnt/packrat/userdirs/david/zpool1/DT9/20170530_1656um_1144um_170529_154105/20170530_1656um_1144um_170529_154105.dat'],
 'sample_rate': 20000.0,
 'save_high': False,
 'save_low': False,
 'save_raw': False,
 'threshold_strong_std_factor': 5.0,
 'threshold_weak_std_factor': 2.5,
 'use_single_threshold': False,
 'voltage_gain': 10.0,
 'waveforms_nsamples': 32,
 'weight_power': 2}
2017-05-29 16:31:34  main:200                Threshold: DoubleThreshold(strong=array([ 494.88513949,  531.0265386 ,  555.40279259,  235.23839519,
        548.48457148,  576.12400822,  563.56007788,  392.69000144,
        400.01983018,  394.48121612,  393.2308285 ,  397.74154722,
        394.83622918,  390.40007075,  518.06875279,  564.61345396,
        400.94377485,  401.57883254,  394.15195811,  379.96134684,
        383.43796589,  379.46081557,  377.99276736,  371.51248944,
        383.5094751 ,  406.58189395,  404.54789123,  400.69196075,
        376.91429974,  413.15205704,  409.97075562,  395.87075846,
        338.17447916,  351.78756879,  346.48488292,  346.70986654,
        341.43591737,  347.83157973,  348.22688089,  334.1891016 ,
        335.54854794,  346.88715775,  353.66424769,  342.62455148,
        353.54834032,  348.04054805,  332.07936038,  332.27305777,
        307.78563774,  324.56445128,  326.74303019,  325.23393235,
        323.79159208,  321.67125759,  263.91635759,  274.67434438,
        278.92106345,  334.38912416,  308.51474984,  305.63225894,
        291.633239  ,  323.85934653,  272.99537972,  271.59367819,
        325.19652041,  327.04540662,  338.09977119,  329.43589629,
        345.7735082 ,  344.92928911,  327.07276052,  311.37583118,
        317.15240453,  315.78795939,  327.26458366,  312.10569474,
        315.74107938,  315.21089011,  316.06301996,  325.86545399,
        329.10955022,  323.93007497,  330.51770443,  338.47255282,
        329.72469582,  332.58282165,  325.76177897,  329.55297636,
        326.96777884,  329.28803705,  336.21129952,  336.73977167,
        327.01918091,  335.19538386,  312.42486929,  324.99462558]), weak=array([ 247.44256975,  265.5132693 ,  277.7013963 ,  117.6191976 ,
        274.24228574,  288.06200411,  281.78003894,  196.34500072,
        200.00991509,  197.24060806,  196.61541425,  198.87077361,
        197.41811459,  195.20003538,  259.03437639,  282.30672698,
        200.47188743,  200.78941627,  197.07597906,  189.98067342,
        191.71898294,  189.73040778,  188.99638368,  185.75624472,
        191.75473755,  203.29094697,  202.27394562,  200.34598038,
        188.45714987,  206.57602852,  204.98537781,  197.93537923,
        169.08723958,  175.8937844 ,  173.24244146,  173.35493327,
        170.71795868,  173.91578986,  174.11344045,  167.0945508 ,
        167.77427397,  173.44357887,  176.83212384,  171.31227574,
        176.77417016,  174.02027403,  166.03968019,  166.13652889,
        153.89281887,  162.28222564,  163.3715151 ,  162.61696617,
        161.89579604,  160.83562879,  131.9581788 ,  137.33717219,
        139.46053172,  167.19456208,  154.25737492,  152.81612947,
        145.8166195 ,  161.92967327,  136.49768986,  135.7968391 ,
        162.59826021,  163.52270331,  169.04988559,  164.71794814,
        172.8867541 ,  172.46464456,  163.53638026,  155.68791559,
        158.57620227,  157.89397969,  163.63229183,  156.05284737,
        157.87053969,  157.60544505,  158.03150998,  162.93272699,
        164.55477511,  161.96503748,  165.25885222,  169.23627641,
        164.86234791,  166.29141083,  162.88088949,  164.77648818,
        163.48388942,  164.64401852,  168.10564976,  168.36988584,
        163.50959045,  167.59769193,  156.21243465,  162.49731279]))
2017-05-29 16:31:34  main:222                Processing chunk <Chunk (0/41328720), recording 0>...
2017-05-29 16:31:35  progressbar:97          0% complete, 0s elapsed. 41 spikes found.
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2017-05-29 16:32:05  progressbar:97          3% complete, 30s elapsed, 13m 1s remaining. 4213 spikes found.
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2017-05-29 16:32:36  progressbar:97          5% complete, 1m 1s elapsed, 16m 7s remaining. 10365 spikes found.
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2017-05-29 16:34:38  progressbar:97          15% complete, 3m 3s elapsed, 16m 32s remaining. 34476 spikes found.
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2017-05-29 16:35:08  progressbar:97          19% complete, 3m 33s elapsed, 14m 41s remaining. 39002 spikes found.
2017-05-29 16:35:08  main:222                Processing chunk <Chunk (8057300/41328720), recording 0>...
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2017-05-29 16:35:39  progressbar:97          22% complete, 4m 4s elapsed, 14m 15s remaining. 43412 spikes found.
2017-05-29 16:35:39  main:222                Processing chunk <Chunk (9180200/41328720), recording 0>...
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2017-05-29 16:36:09  progressbar:97          23% complete, 4m 34s elapsed, 14m 29s remaining. 46959 spikes found.
2017-05-29 16:36:09  main:222                Processing chunk <Chunk (9909100/41328720), recording 0>...
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2017-05-29 16:36:39  progressbar:97          25% complete, 5m 4s elapsed, 14m 39s remaining. 50342 spikes found.
2017-05-29 16:36:39  main:222                Processing chunk <Chunk (10638000/41328720), recording 0>...
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2017-05-29 16:37:09  progressbar:97          27% complete, 5m 34s elapsed, 14m 40s remaining. 53859 spikes found.
2017-05-29 16:37:09  main:222                Processing chunk <Chunk (11386600/41328720), recording 0>...
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2017-05-29 16:37:40  progressbar:97          29% complete, 6m 5s elapsed, 14m 36s remaining. 57439 spikes found.
2017-05-29 16:37:40  main:222                Processing chunk <Chunk (12154900/41328720), recording 0>...
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2017-05-29 16:38:10  progressbar:97          31% complete, 6m 35s elapsed, 14m 19s remaining. 60994 spikes found.
2017-05-29 16:38:10  main:222                Processing chunk <Chunk (13021700/41328720), recording 0>...
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2017-05-29 16:38:41  progressbar:97          33% complete, 7m 6s elapsed, 14m 11s remaining. 64683 spikes found.
2017-05-29 16:38:41  main:222                Processing chunk <Chunk (13790000/41328720), recording 0>...
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2017-05-29 16:39:11  progressbar:97          35% complete, 7m 36s elapsed, 13m 58s remaining. 68175 spikes found.
2017-05-29 16:39:11  main:222                Processing chunk <Chunk (14578000/41328720), recording 0>...
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2017-05-29 16:39:42  progressbar:97          37% complete, 8m 7s elapsed, 13m 47s remaining. 71639 spikes found.
2017-05-29 16:39:42  main:222                Processing chunk <Chunk (15306900/41328720), recording 0>...
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2017-05-29 16:40:12  progressbar:97          38% complete, 8m 37s elapsed, 13m 32s remaining. 75189 spikes found.
2017-05-29 16:40:12  main:222                Processing chunk <Chunk (16075200/41328720), recording 0>...
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2017-05-29 16:40:42  progressbar:97          40% complete, 9m 8s elapsed, 13m 11s remaining. 78883 spikes found.
2017-05-29 16:40:42  main:222                Processing chunk <Chunk (16902600/41328720), recording 0>...
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2017-05-29 16:41:13  progressbar:97          42% complete, 9m 38s elapsed, 12m 50s remaining. 82269 spikes found.
2017-05-29 16:41:13  main:222                Processing chunk <Chunk (17730000/41328720), recording 0>...
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2017-05-29 16:41:44  progressbar:97          44% complete, 10m 9s elapsed, 12m 30s remaining. 85818 spikes found.
2017-05-29 16:41:44  main:222                Processing chunk <Chunk (18518000/41328720), recording 0>...
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2017-05-29 16:42:15  progressbar:97          46% complete, 10m 40s elapsed, 12m 7s remaining. 89152 spikes found.
2017-05-29 16:42:15  main:222                Processing chunk <Chunk (19345400/41328720), recording 0>...
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2017-05-29 16:42:46  progressbar:97          48% complete, 11m 11s elapsed, 11m 46s remaining. 92508 spikes found.
2017-05-29 16:42:46  main:222                Processing chunk <Chunk (20133400/41328720), recording 0>...
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2017-05-29 16:43:16  progressbar:97          50% complete, 11m 41s elapsed, 11m 30s remaining. 95660 spikes found.
2017-05-29 16:43:16  main:222                Processing chunk <Chunk (20822900/41328720), recording 0>...
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2017-05-29 16:43:46  progressbar:97          52% complete, 12m 11s elapsed, 11m 12s remaining. 98728 spikes found.
2017-05-29 16:43:46  main:222                Processing chunk <Chunk (21532100/41328720), recording 0>...
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2017-05-29 16:44:47  progressbar:97          56% complete, 13m 12s elapsed, 10m 21s remaining. 104725 spikes found.
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2017-05-29 16:45:18  progressbar:97          57% complete, 13m 43s elapsed, 10m 0s remaining. 107797 spikes found.
2017-05-29 16:45:18  main:222                Processing chunk <Chunk (23896100/41328720), recording 0>...
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2017-05-29 16:45:48  progressbar:97          59% complete, 14m 13s elapsed, 9m 39s remaining. 110993 spikes found.
2017-05-29 16:45:48  main:222                Processing chunk <Chunk (24625000/41328720), recording 0>...
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2017-05-29 16:46:19  progressbar:97          61% complete, 14m 44s elapsed, 9m 18s remaining. 114052 spikes found.
2017-05-29 16:46:19  main:222                Processing chunk <Chunk (25334200/41328720), recording 0>...
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2017-05-29 16:46:50  progressbar:97          63% complete, 15m 15s elapsed, 8m 57s remaining. 117061 spikes found.
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2017-05-29 16:48:21  progressbar:97          68% complete, 16m 46s elapsed, 7m 45s remaining. 126631 spikes found.
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2017-05-29 16:48:52  progressbar:97          70% complete, 17m 17s elapsed, 7m 5s remaining. 130946 spikes found.
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2017-05-29 16:49:52  progressbar:97          75% complete, 18m 17s elapsed, 6m 5s remaining. 138262 spikes found.
2017-05-29 16:49:52  main:222                Processing chunk <Chunk (31007800/41328720), recording 0>...
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2017-05-29 16:50:23  progressbar:97          76% complete, 18m 48s elapsed, 5m 38s remaining. 141676 spikes found.
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2017-05-29 16:50:53  progressbar:97          78% complete, 19m 18s elapsed, 5m 10s remaining. 145265 spikes found.
2017-05-29 16:50:53  main:222                Processing chunk <Chunk (32603500/41328720), recording 0>...
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2017-05-29 16:51:23  progressbar:97          81% complete, 19m 48s elapsed, 4m 37s remaining. 149151 spikes found.
2017-05-29 16:51:23  main:222                Processing chunk <Chunk (33509700/41328720), recording 0>...
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2017-05-29 16:51:54  progressbar:97          83% complete, 20m 19s elapsed, 4m 5s remaining. 152884 spikes found.
2017-05-29 16:51:54  main:222                Processing chunk <Chunk (34396200/41328720), recording 0>...
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2017-05-29 16:53:55  progressbar:97          92% complete, 22m 20s elapsed, 1m 52s remaining. 169476 spikes found.
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2017-05-29 16:54:55  progressbar:97          96% complete, 23m 21s elapsed, 46s remaining. 178082 spikes found.
2017-05-29 16:54:55  main:222                Processing chunk <Chunk (39991000/41328720), recording 0>...
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2017-05-29 16:55:26  progressbar:97          99% complete, 23m 51s elapsed, 9s remaining. 182263 spikes found.
2017-05-29 16:55:26  main:222                Processing chunk <Chunk (41054800/41328720), recording 0>...
2017-05-29 16:55:26  main:222                Processing chunk <Chunk (41074500/41328720), recording 0>...
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2017-05-29 16:55:33  progressbar:97          100% complete, 23m 58s elapsed, 0s remaining. 183132 spikes found.