2017-05-29 20:56:02  main:187                Starting SpikeDetekt version 0.3.0 on <DatRawReader /mnt/packrat/userdirs/david/zpool1/DT9/20170530_1656um_1144um_170529_154105/20170530_1656um_1144um_170529_154105.dat>
2017-05-29 20:56:02  main:188                Parameters: 
{'__doc__': 'Contain default parameters.',
 'canonical_pcs': None,
 'chunk_overlap': 300,
 'chunk_size': 20000,
 'connected_component_join_size': 1,
 'detect_spikes': 'negative',
 'diagnostics_path': None,
 'excerpt_size': 20000,
 'experiment_name': '/mnt/packrat/userdirs/david/zpool1/DT9/20170530_1656um_1144um_170529_154105/11/20170530_1656um_1144um_170529_154105_sh11',
 'extract_s_after': 16,
 'extract_s_before': 16,
 'features_contiguous': True,
 'filter_butter_order': 3,
 'filter_high': 9500.0,
 'filter_low': 600.0,
 'nbits': 16,
 'nchannels': 96,
 'nexcerpts': 60,
 'nfeatures_per_channel': 5,
 'pca_nwaveforms_max': 20000,
 'prb_file': '11.prb',
 'raw_data_files': ['/mnt/packrat/userdirs/david/zpool1/DT9/20170530_1656um_1144um_170529_154105/20170530_1656um_1144um_170529_154105.dat'],
 'sample_rate': 20000.0,
 'save_high': False,
 'save_low': False,
 'save_raw': False,
 'threshold_strong_std_factor': 5.0,
 'threshold_weak_std_factor': 2.5,
 'use_single_threshold': False,
 'voltage_gain': 10.0,
 'waveforms_nsamples': 32,
 'weight_power': 2}
2017-05-29 20:56:34  main:200                Threshold: DoubleThreshold(strong=array([ 494.88513949,  531.0265386 ,  555.40279259,  235.23839519,
        548.48457148,  576.12400822,  563.56007788,  392.69000144,
        400.01983018,  394.48121612,  393.2308285 ,  397.74154722,
        394.83622918,  390.40007075,  518.06875279,  564.61345396,
        400.94377485,  401.57883254,  394.15195811,  379.96134684,
        383.43796589,  379.46081557,  377.99276736,  371.51248944,
        383.5094751 ,  406.58189395,  404.54789123,  400.69196075,
        376.91429974,  413.15205704,  409.97075562,  395.87075846,
        338.17447916,  351.78756879,  346.48488292,  346.70986654,
        341.43591737,  347.83157973,  348.22688089,  334.1891016 ,
        335.54854794,  346.88715775,  353.66424769,  342.62455148,
        353.54834032,  348.04054805,  332.07936038,  332.27305777,
        307.78563774,  324.56445128,  326.74303019,  325.23393235,
        323.79159208,  321.67125759,  263.91635759,  274.67434438,
        278.92106345,  334.38912416,  308.51474984,  305.63225894,
        291.633239  ,  323.85934653,  272.99537972,  271.59367819,
        325.19652041,  327.04540662,  338.09977119,  329.43589629,
        345.7735082 ,  344.92928911,  327.07276052,  311.37583118,
        317.15240453,  315.78795939,  327.26458366,  312.10569474,
        315.74107938,  315.21089011,  316.06301996,  325.86545399,
        329.10955022,  323.93007497,  330.51770443,  338.47255282,
        329.72469582,  332.58282165,  325.76177897,  329.55297636,
        326.96777884,  329.28803705,  336.21129952,  336.73977167,
        327.01918091,  335.19538386,  312.42486929,  324.99462558]), weak=array([ 247.44256975,  265.5132693 ,  277.7013963 ,  117.6191976 ,
        274.24228574,  288.06200411,  281.78003894,  196.34500072,
        200.00991509,  197.24060806,  196.61541425,  198.87077361,
        197.41811459,  195.20003538,  259.03437639,  282.30672698,
        200.47188743,  200.78941627,  197.07597906,  189.98067342,
        191.71898294,  189.73040778,  188.99638368,  185.75624472,
        191.75473755,  203.29094697,  202.27394562,  200.34598038,
        188.45714987,  206.57602852,  204.98537781,  197.93537923,
        169.08723958,  175.8937844 ,  173.24244146,  173.35493327,
        170.71795868,  173.91578986,  174.11344045,  167.0945508 ,
        167.77427397,  173.44357887,  176.83212384,  171.31227574,
        176.77417016,  174.02027403,  166.03968019,  166.13652889,
        153.89281887,  162.28222564,  163.3715151 ,  162.61696617,
        161.89579604,  160.83562879,  131.9581788 ,  137.33717219,
        139.46053172,  167.19456208,  154.25737492,  152.81612947,
        145.8166195 ,  161.92967327,  136.49768986,  135.7968391 ,
        162.59826021,  163.52270331,  169.04988559,  164.71794814,
        172.8867541 ,  172.46464456,  163.53638026,  155.68791559,
        158.57620227,  157.89397969,  163.63229183,  156.05284737,
        157.87053969,  157.60544505,  158.03150998,  162.93272699,
        164.55477511,  161.96503748,  165.25885222,  169.23627641,
        164.86234791,  166.29141083,  162.88088949,  164.77648818,
        163.48388942,  164.64401852,  168.10564976,  168.36988584,
        163.50959045,  167.59769193,  156.21243465,  162.49731279]))
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2017-05-29 20:57:05  progressbar:97          3% complete, 30s elapsed, 15m 27s remaining. 241 spikes found.
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2017-05-29 20:57:36  progressbar:97          5% complete, 1m 1s elapsed, 17m 30s remaining. 934 spikes found.
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2017-05-29 20:59:07  progressbar:97          9% complete, 2m 32s elapsed, 23m 24s remaining. 4295 spikes found.
2017-05-29 20:59:07  main:222                Processing chunk <Chunk (4058200/41328720), recording 0>...
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2017-05-29 20:59:38  progressbar:97          11% complete, 3m 3s elapsed, 23m 7s remaining. 4457 spikes found.
2017-05-29 20:59:38  main:222                Processing chunk <Chunk (4826500/41328720), recording 0>...
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2017-05-29 21:00:09  progressbar:97          13% complete, 3m 34s elapsed, 23m 1s remaining. 4986 spikes found.
2017-05-29 21:00:09  main:222                Processing chunk <Chunk (5555400/41328720), recording 0>...
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2017-05-29 21:00:39  progressbar:97          14% complete, 4m 4s elapsed, 23m 25s remaining. 6027 spikes found.
2017-05-29 21:00:39  main:222                Processing chunk <Chunk (6126700/41328720), recording 0>...
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2017-05-29 21:01:09  progressbar:97          16% complete, 4m 34s elapsed, 22m 42s remaining. 6652 spikes found.
2017-05-29 21:01:09  main:222                Processing chunk <Chunk (6934400/41328720), recording 0>...
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2017-05-29 21:01:40  progressbar:97          18% complete, 5m 5s elapsed, 22m 9s remaining. 7064 spikes found.
2017-05-29 21:01:40  main:222                Processing chunk <Chunk (7722400/41328720), recording 0>...
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2017-05-29 21:02:11  progressbar:97          20% complete, 5m 36s elapsed, 21m 40s remaining. 7590 spikes found.
2017-05-29 21:02:11  main:222                Processing chunk <Chunk (8490700/41328720), recording 0>...
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2017-05-29 21:02:41  progressbar:97          21% complete, 6m 6s elapsed, 22m 6s remaining. 8650 spikes found.
2017-05-29 21:02:41  main:222                Processing chunk <Chunk (8943800/41328720), recording 0>...
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2017-05-29 21:03:12  progressbar:97          22% complete, 6m 37s elapsed, 22m 28s remaining. 9924 spikes found.
2017-05-29 21:03:12  main:222                Processing chunk <Chunk (9416600/41328720), recording 0>...
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2017-05-29 21:03:43  progressbar:97          23% complete, 7m 8s elapsed, 22m 49s remaining. 11207 spikes found.
2017-05-29 21:03:43  main:222                Processing chunk <Chunk (9850000/41328720), recording 0>...
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2017-05-29 21:04:14  progressbar:97          25% complete, 7m 39s elapsed, 22m 48s remaining. 12504 spikes found.
2017-05-29 21:04:14  main:222                Processing chunk <Chunk (10381900/41328720), recording 0>...
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2017-05-29 21:04:44  progressbar:97          26% complete, 8m 9s elapsed, 22m 40s remaining. 14000 spikes found.
2017-05-29 21:04:44  main:222                Processing chunk <Chunk (10933500/41328720), recording 0>...
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2017-05-29 21:05:15  progressbar:97          27% complete, 8m 40s elapsed, 22m 48s remaining. 15166 spikes found.
2017-05-29 21:05:15  main:222                Processing chunk <Chunk (11386600/41328720), recording 0>...
2017-05-29 21:05:16  main:222                Processing chunk <Chunk (11406300/41328720), recording 0>...
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2017-05-29 21:05:46  progressbar:97          28% complete, 9m 11s elapsed, 22m 51s remaining. 16356 spikes found.
2017-05-29 21:05:46  main:222                Processing chunk <Chunk (11859400/41328720), recording 0>...
2017-05-29 21:05:48  main:222                Processing chunk <Chunk (11879100/41328720), recording 0>...
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2017-05-29 21:06:17  progressbar:97          29% complete, 9m 42s elapsed, 22m 46s remaining. 17491 spikes found.
2017-05-29 21:06:17  main:222                Processing chunk <Chunk (12351900/41328720), recording 0>...
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2017-05-29 21:06:48  progressbar:97          31% complete, 10m 13s elapsed, 21m 49s remaining. 19012 spikes found.
2017-05-29 21:06:48  main:222                Processing chunk <Chunk (13179300/41328720), recording 0>...
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2017-05-29 21:07:19  progressbar:97          33% complete, 10m 44s elapsed, 21m 26s remaining. 20629 spikes found.
2017-05-29 21:07:19  main:222                Processing chunk <Chunk (13790000/41328720), recording 0>...
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2017-05-29 21:07:49  progressbar:97          35% complete, 11m 14s elapsed, 20m 48s remaining. 22289 spikes found.
2017-05-29 21:07:49  main:222                Processing chunk <Chunk (14499200/41328720), recording 0>...
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2017-05-29 21:08:20  progressbar:97          36% complete, 11m 45s elapsed, 20m 11s remaining. 23919 spikes found.
2017-05-29 21:08:20  main:222                Processing chunk <Chunk (15208400/41328720), recording 0>...
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2017-05-29 21:08:50  progressbar:97          38% complete, 12m 15s elapsed, 19m 37s remaining. 25616 spikes found.
2017-05-29 21:08:50  main:222                Processing chunk <Chunk (15897900/41328720), recording 0>...
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2017-05-29 21:09:21  progressbar:97          40% complete, 12m 46s elapsed, 18m 57s remaining. 27242 spikes found.
2017-05-29 21:09:21  main:222                Processing chunk <Chunk (16646500/41328720), recording 0>...
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2017-05-29 21:09:52  progressbar:97          42% complete, 13m 17s elapsed, 18m 7s remaining. 28723 spikes found.
2017-05-29 21:09:52  main:222                Processing chunk <Chunk (17493600/41328720), recording 0>...
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2017-05-29 21:10:23  progressbar:97          43% complete, 13m 48s elapsed, 17m 34s remaining. 30248 spikes found.
2017-05-29 21:10:23  main:222                Processing chunk <Chunk (18183100/41328720), recording 0>...
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2017-05-29 21:10:54  progressbar:97          46% complete, 14m 19s elapsed, 16m 45s remaining. 31726 spikes found.
2017-05-29 21:10:54  main:222                Processing chunk <Chunk (19049900/41328720), recording 0>...
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2017-05-29 21:11:24  progressbar:97          47% complete, 14m 49s elapsed, 16m 15s remaining. 33151 spikes found.
2017-05-29 21:11:24  main:222                Processing chunk <Chunk (19719700/41328720), recording 0>...
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2017-05-29 21:11:55  progressbar:97          49% complete, 15m 20s elapsed, 15m 50s remaining. 34367 spikes found.
2017-05-29 21:11:55  main:222                Processing chunk <Chunk (20330400/41328720), recording 0>...
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2017-05-29 21:12:25  progressbar:97          50% complete, 15m 50s elapsed, 15m 25s remaining. 35683 spikes found.
2017-05-29 21:12:25  main:222                Processing chunk <Chunk (20941100/41328720), recording 0>...
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2017-05-29 21:12:55  progressbar:97          52% complete, 16m 21s elapsed, 15m 0s remaining. 36838 spikes found.
2017-05-29 21:12:55  main:222                Processing chunk <Chunk (21551800/41328720), recording 0>...
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2017-05-29 21:13:26  progressbar:97          54% complete, 16m 51s elapsed, 14m 11s remaining. 37815 spikes found.
2017-05-29 21:13:26  main:222                Processing chunk <Chunk (22438300/41328720), recording 0>...
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2017-05-29 21:13:57  progressbar:97          55% complete, 17m 22s elapsed, 13m 40s remaining. 39015 spikes found.
2017-05-29 21:13:57  main:222                Processing chunk <Chunk (23127800/41328720), recording 0>...
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2017-05-29 21:14:27  progressbar:97          57% complete, 17m 52s elapsed, 13m 7s remaining. 40268 spikes found.
2017-05-29 21:14:27  main:222                Processing chunk <Chunk (23837000/41328720), recording 0>...
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2017-05-29 21:14:58  progressbar:97          59% complete, 18m 23s elapsed, 12m 31s remaining. 41537 spikes found.
2017-05-29 21:14:58  main:222                Processing chunk <Chunk (24585600/41328720), recording 0>...
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2017-05-29 21:15:28  progressbar:97          61% complete, 18m 53s elapsed, 12m 4s remaining. 42743 spikes found.
2017-05-29 21:15:28  main:222                Processing chunk <Chunk (25216000/41328720), recording 0>...
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2017-05-29 21:15:59  progressbar:97          62% complete, 19m 24s elapsed, 11m 36s remaining. 43892 spikes found.
2017-05-29 21:15:59  main:222                Processing chunk <Chunk (25866100/41328720), recording 0>...
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2017-05-29 21:16:30  progressbar:97          64% complete, 19m 55s elapsed, 11m 3s remaining. 45212 spikes found.
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2017-05-29 21:17:00  progressbar:97          66% complete, 20m 25s elapsed, 10m 21s remaining. 46639 spikes found.
2017-05-29 21:17:00  main:222                Processing chunk <Chunk (27422400/41328720), recording 0>...
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2017-05-29 21:17:30  progressbar:97          68% complete, 20m 55s elapsed, 9m 49s remaining. 47997 spikes found.
2017-05-29 21:17:30  main:222                Processing chunk <Chunk (28131600/41328720), recording 0>...
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2017-05-29 21:18:01  progressbar:97          69% complete, 21m 26s elapsed, 9m 20s remaining. 49098 spikes found.
2017-05-29 21:18:01  main:222                Processing chunk <Chunk (28781700/41328720), recording 0>...
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2017-05-29 21:18:32  progressbar:97          71% complete, 21m 57s elapsed, 8m 49s remaining. 50559 spikes found.
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2017-05-29 21:19:02  progressbar:97          72% complete, 22m 27s elapsed, 8m 21s remaining. 51798 spikes found.
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2017-05-29 21:19:32  progressbar:97          74% complete, 22m 57s elapsed, 7m 52s remaining. 53140 spikes found.
2017-05-29 21:19:32  main:222                Processing chunk <Chunk (30771400/41328720), recording 0>...
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2017-05-29 21:20:03  progressbar:97          76% complete, 23m 28s elapsed, 7m 19s remaining. 54483 spikes found.
2017-05-29 21:20:03  main:222                Processing chunk <Chunk (31500300/41328720), recording 0>...
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2017-05-29 21:20:33  progressbar:97          77% complete, 23m 58s elapsed, 6m 50s remaining. 55703 spikes found.
2017-05-29 21:20:33  main:222                Processing chunk <Chunk (32150400/41328720), recording 0>...
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2017-05-29 21:21:04  progressbar:97          79% complete, 24m 29s elapsed, 6m 22s remaining. 57021 spikes found.
2017-05-29 21:21:04  main:222                Processing chunk <Chunk (32800500/41328720), recording 0>...
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2017-05-29 21:21:35  progressbar:97          81% complete, 25m 0s elapsed, 5m 51s remaining. 58254 spikes found.
2017-05-29 21:21:35  main:222                Processing chunk <Chunk (33490000/41328720), recording 0>...
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2017-05-29 21:22:05  progressbar:97          82% complete, 25m 30s elapsed, 5m 22s remaining. 59550 spikes found.
2017-05-29 21:22:05  main:222                Processing chunk <Chunk (34140100/41328720), recording 0>...
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2017-05-29 21:22:36  progressbar:97          84% complete, 26m 1s elapsed, 4m 48s remaining. 60462 spikes found.
2017-05-29 21:22:36  main:222                Processing chunk <Chunk (34888700/41328720), recording 0>...
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2017-05-29 21:25:08  progressbar:97          92% complete, 28m 33s elapsed, 2m 17s remaining. 66565 spikes found.
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2017-05-29 21:26:09  progressbar:97          95% complete, 29m 34s elapsed, 1m 16s remaining. 69037 spikes found.
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2017-05-29 21:26:39  progressbar:97          97% complete, 30m 4s elapsed, 38s remaining. 69986 spikes found.
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2017-05-29 21:27:04  progressbar:97          100% complete, 30m 29s elapsed, 0s remaining. 70234 spikes found.