2017-05-29 21:11:15  main:187                Starting SpikeDetekt version 0.3.0 on <DatRawReader /mnt/packrat/userdirs/david/zpool1/DT9/20170530_1656um_1144um_170529_154105/20170530_1656um_1144um_170529_154105.dat>
2017-05-29 21:11:15  main:188                Parameters: 
{'__doc__': 'Contain default parameters.',
 'canonical_pcs': None,
 'chunk_overlap': 300,
 'chunk_size': 20000,
 'connected_component_join_size': 1,
 'detect_spikes': 'negative',
 'diagnostics_path': None,
 'excerpt_size': 20000,
 'experiment_name': '/mnt/packrat/userdirs/david/zpool1/DT9/20170530_1656um_1144um_170529_154105/8/20170530_1656um_1144um_170529_154105_sh8',
 'extract_s_after': 16,
 'extract_s_before': 16,
 'features_contiguous': True,
 'filter_butter_order': 3,
 'filter_high': 9500.0,
 'filter_low': 600.0,
 'nbits': 16,
 'nchannels': 96,
 'nexcerpts': 60,
 'nfeatures_per_channel': 5,
 'pca_nwaveforms_max': 20000,
 'prb_file': '8.prb',
 'raw_data_files': ['/mnt/packrat/userdirs/david/zpool1/DT9/20170530_1656um_1144um_170529_154105/20170530_1656um_1144um_170529_154105.dat'],
 'sample_rate': 20000.0,
 'save_high': False,
 'save_low': False,
 'save_raw': False,
 'threshold_strong_std_factor': 5.0,
 'threshold_weak_std_factor': 2.5,
 'use_single_threshold': False,
 'voltage_gain': 10.0,
 'waveforms_nsamples': 32,
 'weight_power': 2}
2017-05-29 21:11:46  main:200                Threshold: DoubleThreshold(strong=array([ 494.88513949,  531.0265386 ,  555.40279259,  235.23839519,
        548.48457148,  576.12400822,  563.56007788,  392.69000144,
        400.01983018,  394.48121612,  393.2308285 ,  397.74154722,
        394.83622918,  390.40007075,  518.06875279,  564.61345396,
        400.94377485,  401.57883254,  394.15195811,  379.96134684,
        383.43796589,  379.46081557,  377.99276736,  371.51248944,
        383.5094751 ,  406.58189395,  404.54789123,  400.69196075,
        376.91429974,  413.15205704,  409.97075562,  395.87075846,
        338.17447916,  351.78756879,  346.48488292,  346.70986654,
        341.43591737,  347.83157973,  348.22688089,  334.1891016 ,
        335.54854794,  346.88715775,  353.66424769,  342.62455148,
        353.54834032,  348.04054805,  332.07936038,  332.27305777,
        307.78563774,  324.56445128,  326.74303019,  325.23393235,
        323.79159208,  321.67125759,  263.91635759,  274.67434438,
        278.92106345,  334.38912416,  308.51474984,  305.63225894,
        291.633239  ,  323.85934653,  272.99537972,  271.59367819,
        325.19652041,  327.04540662,  338.09977119,  329.43589629,
        345.7735082 ,  344.92928911,  327.07276052,  311.37583118,
        317.15240453,  315.78795939,  327.26458366,  312.10569474,
        315.74107938,  315.21089011,  316.06301996,  325.86545399,
        329.10955022,  323.93007497,  330.51770443,  338.47255282,
        329.72469582,  332.58282165,  325.76177897,  329.55297636,
        326.96777884,  329.28803705,  336.21129952,  336.73977167,
        327.01918091,  335.19538386,  312.42486929,  324.99462558]), weak=array([ 247.44256975,  265.5132693 ,  277.7013963 ,  117.6191976 ,
        274.24228574,  288.06200411,  281.78003894,  196.34500072,
        200.00991509,  197.24060806,  196.61541425,  198.87077361,
        197.41811459,  195.20003538,  259.03437639,  282.30672698,
        200.47188743,  200.78941627,  197.07597906,  189.98067342,
        191.71898294,  189.73040778,  188.99638368,  185.75624472,
        191.75473755,  203.29094697,  202.27394562,  200.34598038,
        188.45714987,  206.57602852,  204.98537781,  197.93537923,
        169.08723958,  175.8937844 ,  173.24244146,  173.35493327,
        170.71795868,  173.91578986,  174.11344045,  167.0945508 ,
        167.77427397,  173.44357887,  176.83212384,  171.31227574,
        176.77417016,  174.02027403,  166.03968019,  166.13652889,
        153.89281887,  162.28222564,  163.3715151 ,  162.61696617,
        161.89579604,  160.83562879,  131.9581788 ,  137.33717219,
        139.46053172,  167.19456208,  154.25737492,  152.81612947,
        145.8166195 ,  161.92967327,  136.49768986,  135.7968391 ,
        162.59826021,  163.52270331,  169.04988559,  164.71794814,
        172.8867541 ,  172.46464456,  163.53638026,  155.68791559,
        158.57620227,  157.89397969,  163.63229183,  156.05284737,
        157.87053969,  157.60544505,  158.03150998,  162.93272699,
        164.55477511,  161.96503748,  165.25885222,  169.23627641,
        164.86234791,  166.29141083,  162.88088949,  164.77648818,
        163.48388942,  164.64401852,  168.10564976,  168.36988584,
        163.50959045,  167.59769193,  156.21243465,  162.49731279]))
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2017-05-29 21:12:16  progressbar:97          3% complete, 30s elapsed, 16m 9s remaining. 315 spikes found.
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2017-05-29 21:15:48  progressbar:97          19% complete, 4m 2s elapsed, 16m 32s remaining. 5953 spikes found.
2017-05-29 21:15:48  main:222                Processing chunk <Chunk (8116400/41328720), recording 0>...
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2017-05-29 21:16:18  progressbar:97          21% complete, 4m 32s elapsed, 16m 27s remaining. 7094 spikes found.
2017-05-29 21:16:18  main:222                Processing chunk <Chunk (8943800/41328720), recording 0>...
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2017-05-29 21:16:50  progressbar:97          23% complete, 5m 3s elapsed, 16m 37s remaining. 9056 spikes found.
2017-05-29 21:16:50  main:222                Processing chunk <Chunk (9653000/41328720), recording 0>...
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2017-05-29 21:17:21  progressbar:97          24% complete, 5m 34s elapsed, 16m 48s remaining. 10737 spikes found.
2017-05-29 21:17:21  main:222                Processing chunk <Chunk (10303100/41328720), recording 0>...
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2017-05-29 21:17:51  progressbar:97          26% complete, 6m 5s elapsed, 17m 7s remaining. 12140 spikes found.
2017-05-29 21:17:51  main:222                Processing chunk <Chunk (10835000/41328720), recording 0>...
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2017-05-29 21:18:22  progressbar:97          27% complete, 6m 35s elapsed, 17m 6s remaining. 13760 spikes found.
2017-05-29 21:18:22  main:222                Processing chunk <Chunk (11504800/41328720), recording 0>...
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2017-05-29 21:18:52  progressbar:97          29% complete, 7m 6s elapsed, 17m 3s remaining. 15276 spikes found.
2017-05-29 21:18:52  main:222                Processing chunk <Chunk (12154900/41328720), recording 0>...
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2017-05-29 21:19:22  progressbar:97          30% complete, 7m 36s elapsed, 16m 59s remaining. 16799 spikes found.
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2017-05-29 21:19:53  progressbar:97          32% complete, 8m 6s elapsed, 16m 44s remaining. 18141 spikes found.
2017-05-29 21:19:53  main:222                Processing chunk <Chunk (13494500/41328720), recording 0>...
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2017-05-29 21:20:23  progressbar:97          34% complete, 8m 36s elapsed, 16m 35s remaining. 19714 spikes found.
2017-05-29 21:20:23  main:222                Processing chunk <Chunk (14124900/41328720), recording 0>...
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2017-05-29 21:20:54  progressbar:97          35% complete, 9m 7s elapsed, 16m 22s remaining. 21200 spikes found.
2017-05-29 21:20:54  main:222                Processing chunk <Chunk (14794700/41328720), recording 0>...
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2017-05-29 21:21:24  progressbar:97          37% complete, 9m 38s elapsed, 16m 9s remaining. 22629 spikes found.
2017-05-29 21:21:24  main:222                Processing chunk <Chunk (15444800/41328720), recording 0>...
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2017-05-29 21:21:54  progressbar:97          38% complete, 10m 8s elapsed, 15m 56s remaining. 24189 spikes found.
2017-05-29 21:21:54  main:222                Processing chunk <Chunk (16075200/41328720), recording 0>...
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2017-05-29 21:22:25  progressbar:97          40% complete, 10m 39s elapsed, 15m 40s remaining. 25569 spikes found.
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2017-05-29 21:22:55  progressbar:97          42% complete, 11m 9s elapsed, 15m 17s remaining. 26683 spikes found.
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2017-05-29 21:23:25  progressbar:97          43% complete, 11m 39s elapsed, 14m 55s remaining. 28188 spikes found.
2017-05-29 21:23:25  main:222                Processing chunk <Chunk (18124000/41328720), recording 0>...
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2017-05-29 21:23:55  progressbar:97          45% complete, 12m 9s elapsed, 14m 34s remaining. 29576 spikes found.
2017-05-29 21:23:55  main:222                Processing chunk <Chunk (18793800/41328720), recording 0>...
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2017-05-29 21:24:26  progressbar:97          47% complete, 12m 40s elapsed, 14m 14s remaining. 30845 spikes found.
2017-05-29 21:24:26  main:222                Processing chunk <Chunk (19463600/41328720), recording 0>...
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2017-05-29 21:24:57  progressbar:97          48% complete, 13m 11s elapsed, 13m 51s remaining. 32276 spikes found.
2017-05-29 21:24:57  main:222                Processing chunk <Chunk (20153100/41328720), recording 0>...
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2017-05-29 21:25:28  progressbar:97          50% complete, 13m 41s elapsed, 13m 27s remaining. 33679 spikes found.
2017-05-29 21:25:28  main:222                Processing chunk <Chunk (20842600/41328720), recording 0>...
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2017-05-29 21:25:58  progressbar:97          52% complete, 14m 12s elapsed, 13m 3s remaining. 34999 spikes found.
2017-05-29 21:25:58  main:222                Processing chunk <Chunk (21532100/41328720), recording 0>...
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2017-05-29 21:26:28  progressbar:97          54% complete, 14m 42s elapsed, 12m 21s remaining. 35731 spikes found.
2017-05-29 21:26:28  main:222                Processing chunk <Chunk (22458000/41328720), recording 0>...
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2017-05-29 21:26:59  progressbar:97          55% complete, 15m 13s elapsed, 11m 58s remaining. 36898 spikes found.
2017-05-29 21:26:59  main:222                Processing chunk <Chunk (23127800/41328720), recording 0>...
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2017-05-29 21:27:30  progressbar:97          57% complete, 15m 44s elapsed, 11m 32s remaining. 38209 spikes found.
2017-05-29 21:27:30  main:222                Processing chunk <Chunk (23837000/41328720), recording 0>...
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2017-05-29 21:28:01  progressbar:97          59% complete, 16m 14s elapsed, 11m 14s remaining. 39199 spikes found.
2017-05-29 21:28:01  main:222                Processing chunk <Chunk (24428000/41328720), recording 0>...
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2017-05-29 21:28:31  progressbar:97          60% complete, 16m 45s elapsed, 11m 1s remaining. 40242 spikes found.
2017-05-29 21:28:31  main:222                Processing chunk <Chunk (24920500/41328720), recording 0>...
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2017-05-29 21:29:02  progressbar:97          61% complete, 17m 16s elapsed, 10m 46s remaining. 41333 spikes found.
2017-05-29 21:29:02  main:222                Processing chunk <Chunk (25452400/41328720), recording 0>...
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2017-05-29 21:29:32  progressbar:97          63% complete, 17m 46s elapsed, 10m 25s remaining. 42483 spikes found.
2017-05-29 21:29:32  main:222                Processing chunk <Chunk (26043400/41328720), recording 0>...
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2017-05-29 21:30:02  progressbar:97          64% complete, 18m 16s elapsed, 10m 9s remaining. 43552 spikes found.
2017-05-29 21:30:02  main:222                Processing chunk <Chunk (26555600/41328720), recording 0>...
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2017-05-29 21:30:33  progressbar:97          65% complete, 18m 47s elapsed, 9m 47s remaining. 44387 spikes found.
2017-05-29 21:30:33  main:222                Processing chunk <Chunk (27166300/41328720), recording 0>...
2017-05-29 21:30:34  main:222                Processing chunk <Chunk (27186000/41328720), recording 0>...
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2017-05-29 21:31:03  progressbar:97          66% complete, 19m 17s elapsed, 9m 30s remaining. 45455 spikes found.
2017-05-29 21:31:03  main:222                Processing chunk <Chunk (27678500/41328720), recording 0>...
2017-05-29 21:31:04  main:222                Processing chunk <Chunk (27698200/41328720), recording 0>...
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2017-05-29 21:31:34  progressbar:97          68% complete, 19m 47s elapsed, 9m 12s remaining. 46255 spikes found.
2017-05-29 21:31:34  main:222                Processing chunk <Chunk (28210400/41328720), recording 0>...
2017-05-29 21:31:35  main:222                Processing chunk <Chunk (28230100/41328720), recording 0>...
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2017-05-29 21:32:04  progressbar:97          69% complete, 20m 17s elapsed, 8m 53s remaining. 47138 spikes found.
2017-05-29 21:32:04  main:222                Processing chunk <Chunk (28742300/41328720), recording 0>...
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2017-05-29 21:32:35  progressbar:97          71% complete, 20m 49s elapsed, 8m 29s remaining. 48385 spikes found.
2017-05-29 21:32:35  main:222                Processing chunk <Chunk (29353000/41328720), recording 0>...
2017-05-29 21:32:36  main:222                Processing chunk <Chunk (29372700/41328720), recording 0>...
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2017-05-29 21:33:07  progressbar:97          72% complete, 21m 21s elapsed, 8m 8s remaining. 49596 spikes found.
2017-05-29 21:33:07  main:222                Processing chunk <Chunk (29924300/41328720), recording 0>...
2017-05-29 21:33:08  main:222                Processing chunk <Chunk (29944000/41328720), recording 0>...
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2017-05-29 21:33:39  progressbar:97          73% complete, 21m 53s elapsed, 7m 46s remaining. 50721 spikes found.
2017-05-29 21:33:39  main:222                Processing chunk <Chunk (30495600/41328720), recording 0>...
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2017-05-29 21:34:10  progressbar:97          75% complete, 22m 24s elapsed, 7m 26s remaining. 51896 spikes found.
2017-05-29 21:34:10  main:222                Processing chunk <Chunk (31027500/41328720), recording 0>...
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2017-05-29 21:34:41  progressbar:97          76% complete, 22m 55s elapsed, 7m 2s remaining. 53064 spikes found.
2017-05-29 21:34:41  main:222                Processing chunk <Chunk (31618500/41328720), recording 0>...
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2017-05-29 21:35:12  progressbar:97          77% complete, 23m 26s elapsed, 6m 40s remaining. 54166 spikes found.
2017-05-29 21:35:12  main:222                Processing chunk <Chunk (32170100/41328720), recording 0>...
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2017-05-29 21:35:43  progressbar:97          79% complete, 23m 56s elapsed, 6m 19s remaining. 55308 spikes found.
2017-05-29 21:35:43  main:222                Processing chunk <Chunk (32702000/41328720), recording 0>...
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2017-05-29 21:36:14  progressbar:97          80% complete, 24m 27s elapsed, 5m 57s remaining. 56325 spikes found.
2017-05-29 21:36:14  main:222                Processing chunk <Chunk (33233900/41328720), recording 0>...
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2017-05-29 21:36:44  progressbar:97          81% complete, 24m 58s elapsed, 5m 32s remaining. 57378 spikes found.
2017-05-29 21:36:44  main:222                Processing chunk <Chunk (33824900/41328720), recording 0>...
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2017-05-29 21:37:14  progressbar:97          83% complete, 25m 28s elapsed, 5m 11s remaining. 58299 spikes found.
2017-05-29 21:37:14  main:222                Processing chunk <Chunk (34337100/41328720), recording 0>...
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2017-05-29 21:37:45  progressbar:97          84% complete, 25m 59s elapsed, 4m 44s remaining. 59240 spikes found.
2017-05-29 21:37:45  main:222                Processing chunk <Chunk (34947800/41328720), recording 0>...
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2017-05-29 21:38:15  progressbar:97          86% complete, 26m 29s elapsed, 4m 13s remaining. 60085 spikes found.
2017-05-29 21:38:15  main:222                Processing chunk <Chunk (35637300/41328720), recording 0>...
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2017-05-29 21:38:47  progressbar:97          87% complete, 27m 0s elapsed, 3m 49s remaining. 61408 spikes found.
2017-05-29 21:38:47  main:222                Processing chunk <Chunk (36208600/41328720), recording 0>...
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2017-05-29 21:39:17  progressbar:97          88% complete, 27m 31s elapsed, 3m 24s remaining. 62596 spikes found.
2017-05-29 21:39:17  main:222                Processing chunk <Chunk (36779900/41328720), recording 0>...
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2017-05-29 21:39:47  progressbar:97          89% complete, 28m 1s elapsed, 3m 7s remaining. 63409 spikes found.
2017-05-29 21:39:47  main:222                Processing chunk <Chunk (37173900/41328720), recording 0>...
2017-05-29 21:39:49  main:222                Processing chunk <Chunk (37193600/41328720), recording 0>...
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2017-05-29 21:40:18  progressbar:97          90% complete, 28m 32s elapsed, 2m 51s remaining. 64262 spikes found.
2017-05-29 21:40:18  main:222                Processing chunk <Chunk (37567900/41328720), recording 0>...
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2017-05-29 21:40:49  progressbar:97          91% complete, 29m 3s elapsed, 2m 34s remaining. 65149 spikes found.
2017-05-29 21:40:49  main:222                Processing chunk <Chunk (37961900/41328720), recording 0>...
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2017-05-29 21:41:19  progressbar:97          92% complete, 29m 33s elapsed, 2m 15s remaining. 65984 spikes found.
2017-05-29 21:41:19  main:222                Processing chunk <Chunk (38395300/41328720), recording 0>...
2017-05-29 21:41:20  main:222                Processing chunk <Chunk (38415000/41328720), recording 0>...
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2017-05-29 21:41:51  progressbar:97          93% complete, 30m 5s elapsed, 1m 57s remaining. 66739 spikes found.
2017-05-29 21:41:51  main:222                Processing chunk <Chunk (38809000/41328720), recording 0>...
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2017-05-29 21:42:20  main:222                Processing chunk <Chunk (39183300/41328720), recording 0>...
2017-05-29 21:42:22  progressbar:97          94% complete, 30m 36s elapsed, 1m 39s remaining. 67643 spikes found.
2017-05-29 21:42:22  main:222                Processing chunk <Chunk (39203000/41328720), recording 0>...
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2017-05-29 21:42:53  progressbar:97          95% complete, 31m 6s elapsed, 1m 21s remaining. 68479 spikes found.
2017-05-29 21:42:53  main:222                Processing chunk <Chunk (39597000/41328720), recording 0>...
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2017-05-29 21:43:23  progressbar:97          96% complete, 31m 37s elapsed, 59s remaining. 69285 spikes found.
2017-05-29 21:43:23  main:222                Processing chunk <Chunk (40069800/41328720), recording 0>...
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2017-05-29 21:43:53  progressbar:97          98% complete, 32m 7s elapsed, 28s remaining. 69640 spikes found.
2017-05-29 21:43:53  main:222                Processing chunk <Chunk (40719900/41328720), recording 0>...
2017-05-29 21:43:54  main:222                Processing chunk <Chunk (40739600/41328720), recording 0>...
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2017-05-29 21:44:24  progressbar:97          99% complete, 32m 38s elapsed, 2s remaining. 69790 spikes found.
2017-05-29 21:44:24  main:222                Processing chunk <Chunk (41271500/41328720), recording 0>...
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2017-05-29 21:44:28  progressbar:97          100% complete, 32m 41s elapsed, 0s remaining. 69808 spikes found.